Due to local system maintenance on Tuesday, September 27th, nanoHUB will be unable to launch simulation jobs on clusters conte, rice, carter, and hansen. We apologize for any inconvenience.

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Research

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Plasmonic Nanostructures

Calculate scattering and absorption of electromagnetic waves by targets with arbitrary geometries and complex refractive index.

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Functionalization Workbench

Interact with simulations of surfaces functionalized with a variety of biomolecules.

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Molecular Dynamics Showcase

See visualizations from the latest research simulations.

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cadnano to PDB File Converter

cadnano simplifies and enhances the process of designing three-dimensional DNA origami nanostructures

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Nisin Diffusion

Simulate cell fluorescence and observe stochastic patterns.

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Nanoindentation

Explore the mechanical behavior and response of biological material to nanoindentation.

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Nanoindentation of Soft Elastic Materials

Using inverse methods to estimate the Young's Modulus of soft materials for a given nanoindentation force-displacement experimental data.

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Nanoindentation of Soft Viscoelastic Materials

Finds viscoelastic parameters of Standard Linear Solid models from experimental data.

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Discrete Chemical Master Equation Solver

Solves dCME by optimal enumeration of finitely buffered state space.

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Pattern Formation

Engineer an emergent pattern using principles of intercellular synthetic biology.

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DDSCAT File Conversion Tool

Convert your own custom targets into a DDSCAT compatible format.

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Hydrodynamic Particle Trapping

Learn about the hydrodynamic particle trapping tool developed at Illinois and run a simulation.

Also on NanoHUB

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Biosensor Lab

Use this tool to learn about, evaluate and predict the performance parameters of Biosensors

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Molecular Foundry Photonics Toolkit

Use this tool to simulate realistic 1, 2, or 3-dimension nano-optical systems using the FDTD method.

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Nanoparticle Array Lab

Use this FDTD-based tool to explore the interaction of light with an array of metallic nano-particles.

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Single and Multilayer Nanoparticles

Extinction, Scattering and Absorption efficiencies of single and multilayer nanoparticles

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Nanosphere Optics Lab

Nanosphere Optics Lab uses Mie theory to calculate the absorption, scattering, and extinction spectra of spherical nanoparticles.

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Nanoparticle Quantitative Lab

Use this FDTD-based tool to help understand the reflection and transmission properties of metallic and dielectric nano-particles.

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Nanobio Photonics Simulator

Use this tool to simulate the passage of light through biological tissue embedded with nano-particles.

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Exciton Dynamics Lab for Light-Harvesting Complexes

Use this tool to calculate absorption spectra, two-dimensional echo-spectra, and track the exciton populations and coherences.

Selected from the Web

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SIMONA

Use this versatile framework to run stochastic simulations of nanoscale systems.

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AMBER

Use this set of molecular dynamics force fields and simulation programs to understand molecular interactions.

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CHARMM

This software is a versatile and widely used molecular simulation program with broad application to many-particle systems.

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Abalone

Use this software to run molecular dynamics simulations of biopolymers.