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Molecular Dynamics Showcase

By Michael McLennan

Purdue University

View interesting features of a molecular dynamics trajectory file

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Version 0.8 - published on 01 Jul 2014

doi:10.4231/D3TX35707 cite this

Open source: license | download

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    Example trajectory file Another view from the showcase

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Abstract

This tool uses VMD as a visualization engine, but provides a simpler view of the interesting features within a molecular dynamics trajectory file. Users can choose from among a handful of views. Each view can take the user to a particular frame within the trajectory, and render that frame from a particular point of view with various options turned on.

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VMD Visual Molecular Dynamics, http://www.ks.uiuc.edu/Research/vmd/

Credits

Thanks to Alek Aksimentiev and Chen-Yu Li of the University of Illinois at Urbana-Champaign for their work in helping to design and test this tool.

Cite this work

Researchers should cite this work as follows:

  • Michael McLennan (2013), "Molecular Dynamics Showcase," http://nanohub.org/resources/mdshowcase. (DOI: 10.4231/D3TX35707).

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