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Short Course on Molecular Dynamics Simulation

By Ashlie Martini

University of California, Merced

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Lecture Number/Topic Online Lecture Video Lecture Notes Supplemental Material Suggested Exercises
Lecture 1: Basic Concepts Notes
Lecture 2: Potential Energy Functions Notes
Lecture 3: Integration Algorithms Notes
Lecture 4: Temperature Control Notes
Lecture 5: Boundary Conditions Notes
Lecture 6: Neighbor Lists Notes
Lecture 7: Initialization and Equilibrium Notes
Lecture 8: Static Properties Notes
Lecture 9: Dynamic Properties Notes
Lecture 10: Non Equilibrium MD Notes

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