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cadnano to PDB File Converter

By AbderRahman N Sobh1, Chen-Yu Li1, Nahil Sobh1, Jejoong Yoo

1. University of Illinois at Urbana-Champaign

Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

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Version 1.0e - published on 12 Mar 2014

doi:10.4231/D3CF9J66N cite this

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Abstract

Converts CadNano‘s paired .json and .csv files into a single .pdb file. Output is formatted as a text file following the standards associated with Protein Data Bank (PDB) files and can be downloaded directly through the Rappture interface.

Credits

Conversion Script Development: Jejoong Yoo, The Aksimentiev Group at the University of Illinois - Theoretical and Computational Research at the Interface of Physics, Biology, and Nanotechnology

Sponsored by

NanoBio Node, University of Illinois Champaign-Urbana

Cite this work

Researchers should cite this work as follows:

  • AbderRahman N Sobh; Chen-Yu Li; Nahil Sobh; Jejoong Yoo (2014), "cadnano to PDB File Converter," http://nanohub.org/resources/cadnanocvrt. (DOI: 10.4231/D3CF9J66N).

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