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cadnano to PDB File Converter

By AbderRahman N Sobh1, Chen-Yu Li1, Nahil Sobh1, Jejoong Yoo

1. University of Illinois at Urbana-Champaign

Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

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Version 1.0e - published on 12 Mar 2014

doi:10.4231/D3CF9J66N cite this

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Converts CadNano‘s paired .json and .csv files into a single .pdb file. Output is formatted as a text file following the standards associated with Protein Data Bank (PDB) files and can be downloaded directly through the Rappture interface.


Conversion Script Development: Jejoong Yoo, The Aksimentiev Group at the University of Illinois - Theoretical and Computational Research at the Interface of Physics, Biology, and Nanotechnology

Sponsored by

NanoBio Node, University of Illinois Champaign-Urbana

Cite this work

Researchers should cite this work as follows:

  • AbderRahman N Sobh; Chen-Yu Li; Nahil Sobh; Jejoong Yoo (2014), "cadnano to PDB File Converter," (DOI: 10.4231/D3CF9J66N).

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Tags, a resource for nanoscience and nanotechnology, is supported by the National Science Foundation and other funding agencies. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.