DNA Origami Visualization Tools

By Jessica Nash

North Carolina State University

Visualize DNA origami designs

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Version 1.1 - published on 24 Feb 2017

doi:10.4231/D3VQ2SB97 cite this

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    Heat map of base sequence Circle map showing location of crossovers on scaffold

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Tools

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Abstract

Visualize DNA origami designs from cadnano as circle plots and maps showing sequence of DNA on origami. Input files are .json of DNA origami design for cirlce plots, and the corresponding sequence for base maps.

Output is text file which should be saved as .html and opened with a browser. These images are interactive and give information such as % GC content on the base map and base number at which crossovers occur. Static images can be saved from the browser window

References

Douglas, Shawn M. (2012). cadnano DNA Origami Software (Version 2) [Computer software]. Cambridge, MA: Massachusetts Institute of Technology. Retrieved January 5,2017, Available at http://cadnano.org/

Plotly Technologies Inc. Collaborative data science. Montréal, QC, 2015. https://plot.ly.

Publications

J.M. Majikes, J.A. Nash, T.H. LaBean. Search for effective chemical quenching to arrest molecular assembly and directly monitor DNA nanostructure formation. Nanoscale. DOI: 10.1039/C6NR08433H

Cite this work

Researchers should cite this work as follows:

  • Jessica Nash (2017), "DNA Origami Visualization Tools," http://nanohub.org/resources/cadnanovis. (DOI: 10.4231/D3VQ2SB97).

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