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Tools (1-20 of 22)

  1. Molecular Dynamics Showcase Builder

    09 Nov 2015 | Tools | Contributor(s): Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li

    Tool to create showcases for the Molecular Dynamics Showcase viewer.

    http://nanohub.org/resources/mdshowbuilder

  2. Traction Force Microscopy

    17 Apr 2014 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

    This is a tool for particle motion tracking with respect to physical forces.

    http://nanohub.org/resources/parttrack

  3. nanoDDSCAT+

    13 Aug 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain

    Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

    http://nanohub.org/resources/ddaplus

  4. Nanoindentation

    28 Oct 2013 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk

    Nanoindentation for Mechanical Characterization of Soft Materials

    http://nanohub.org/resources/nanoindentation

  5. nanoDDSCAT

    23 Apr 2013 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

    Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

    http://nanohub.org/resources/dda

  6. Molecular Dynamics Showcase

    06 Jul 2013 | Tools | Contributor(s): Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev

    View interesting features of a molecular dynamics trajectory file

    http://nanohub.org/resources/mdshowcase

  7. [Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights

    07 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.

    http://nanohub.org/resources/pertgradll

  8. [Illinois]: Perturbative Reinforcement Learning to Develop Distributed Representations

    10 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains three-layered networks of sigmoidal units to associate patterns.

    http://nanohub.org/resources/pertdistrep

  9. [Illinois]: Perturbative Reinforcement Learning Using Directed Drift

    10 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using a real-valued adaptation of the directed drift algorithm.

    http://nanohub.org/resources/pertdd

  10. [Illinois]: Error Gradient Estimations Due to Perturbation of One Weight at a Time

    29 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using perturbation of one weight at a time.

    http://nanohub.org/resources/pertgrad1by1

  11. [Illinois]: Avoidance Learn Simulation with 'Call' Neuron

    25 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance learning as a reinforcement learning with two upper motoneurons (sumo and fumo) and one "call" neuron.

    http://nanohub.org/resources/avoidlearncall

  12. [Illinois]: Avoidance Learn Simulation

    20 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance conditioning as reinforcement learning with two upper motoneurons (SUMO and FUMO).

    http://nanohub.org/resources/avoidlearn

  13. Finite Buffer dCME (fb-dCME)

    20 May 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Jie Liang, Nahil Sobh

    Finite Buffer Method for Direct Solution of Discrete Chemical Master Equation (fb-dCME)

    http://nanohub.org/resources/fbsdcme

  14. CNT Mobility

    26 Apr 2009 | Tools | Contributor(s): Yang Zhao, Albert Liao, Eric Pop

    Simulate field effect carrier mobility in back-gated CNTFET devices at low field

    http://nanohub.org/resources/cntmob

  15. Illinois Tools: Basic Bulk Silicon Transport Data at 300K

    27 Oct 2009 | Tools | Contributor(s): Kyeong-hyun Park, Mohamed Mohamed, Nahil Sobh

    Calculations of doped bulk silicon transport data

    http://nanohub.org/resources/bulkmobility

  16. imageJ

    03 Apr 2009 | Tools | Contributor(s): Raheem Syed, Nahil Sobh, Umberto Ravaioli, Gabriel Popescu, Mohamed Mohamed

    It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. It can read many image formats.

    http://nanohub.org/resources/imagej

  17. Illinois Tools: NanoGromacsDemo

    30 Oct 2006 | Tools | Contributor(s): Dairui Chen, Derrick Kearney, Jay Mashl, Nahil Sobh, Eric Jakobsson

    Implementation of the popular molecular dynamics software suite GROMACS

    http://nanohub.org/resources/nanogromacs

  18. nanoJoule

    28 May 2008 | Tools | Contributor(s): Feifei Lian, Feifei Lian, Feifei Lian

    This tool performs a self-consistent simulation of the current-voltage curve of a metallic single-wall carbon nanotube with Joule heating.

    http://nanohub.org/resources/swntjiv

  19. biomoca

    30 May 2006 | Tools | Contributor(s): Reza Toghraee, Umberto Ravaioli

    Ion channel simulator

    http://nanohub.org/resources/biomoca

  20. Quantum and Semi-classical Electrostatics Simulation of SOI Trigates

    19 Feb 2008 | Tools | Contributor(s): Hyung-Seok Hahm, Andres Godoy

    Generate quantum/semi-classical electrostatic simulation results for a simple Trigate structure

    http://nanohub.org/resources/MCTrigate

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