Tags: Illinois

Tools (1-20 of 22)

  1. Accurate Chemical Master Equation (ACME)

    20 Jun 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang

    Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in...

    http://nanohub.org/resources/fbsdcme

  2. biomoca

    14 Mar 2008 | Tools | Contributor(s): Reza Toghraee, Umberto Ravaioli

    Ion channel simulator

    http://nanohub.org/resources/biomoca

  3. BioMOCA Suite

    14 Feb 2008 | Tools | Contributor(s): David Papke, Reza Toghraee, Umberto Ravaioli, Ankit Raj

    Simulates ion flow through a channel.

    http://nanohub.org/resources/BMCsuite

  4. CNT Mobility

    20 Jan 2010 | Tools | Contributor(s): Yang Zhao, Albert Liao, Eric Pop

    Simulate field effect carrier mobility in back-gated CNTFET devices at low field

    http://nanohub.org/resources/cntmob

  5. Illinois Tools: Basic Bulk Silicon Transport Data at 300K

    24 Nov 2009 | Tools | Contributor(s): Kyeong-hyun Park, Mohamed Mohamed, Nahil Sobh

    Calculations of doped bulk silicon transport data

    http://nanohub.org/resources/bulkmobility

  6. Illinois Tools: NanoGromacs

    29 Feb 2008 | Tools | Contributor(s): Dairui Chen, Derrick Kearney, Jay Mashl, Nahil Sobh, Eric Jakobsson

    Implementation of the popular molecular dynamics software suite GROMACS

    http://nanohub.org/resources/nanogromacsii

  7. Illinois Tools: NanoGromacsDemo

    08 Sep 2008 | Tools | Contributor(s): Dairui Chen, Derrick Kearney, Jay Mashl, Nahil Sobh, Eric Jakobsson

    Implementation of the popular molecular dynamics software suite GROMACS

    http://nanohub.org/resources/nanogromacs

  8. imageJ

    22 May 2009 | Tools | Contributor(s): Raheem Syed, Nahil Sobh, Umberto Ravaioli, Gabriel Popescu, Mohamed Mohamed

    It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. It can read many image formats.

    http://nanohub.org/resources/imagej

  9. Molecular Dynamics Showcase

    14 Oct 2013 | Tools | Contributor(s): Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev, George A. Howlett

    View interesting features of a molecular dynamics trajectory file

    http://nanohub.org/resources/mdshowcase

  10. Molecular Dynamics Showcase Builder

    09 Nov 2015 | Tools | Contributor(s): Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li

    Tool to create showcases for the Molecular Dynamics Showcase viewer.

    http://nanohub.org/resources/mdshowbuilder

  11. nanoDDSCAT

    22 Jan 2014 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

    Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

    http://nanohub.org/resources/dda

  12. nanoDDSCAT+

    24 Sep 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain

    Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

    http://nanohub.org/resources/ddaplus

  13. Nanoindentation

    07 Mar 2014 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk

    Nanoindentation for Mechanical Characterization of Soft Materials

    http://nanohub.org/resources/nanoindentation

  14. nanoJoule

    10 Jul 2008 | Tools | Contributor(s): Feifei Lian, Feifei Lian, Feifei Lian

    This tool performs a self-consistent simulation of the current-voltage curve of a metallic single-wall carbon nanotube with Joule heating.

    http://nanohub.org/resources/swntjiv

  15. Quantum and Semi-classical Electrostatics Simulation of SOI Trigates

    04 Mar 2008 | Tools | Contributor(s): Hyung-Seok Hahm, Andres Godoy

    Generate quantum/semi-classical electrostatic simulation results for a simple Trigate structure

    http://nanohub.org/resources/MCTrigate

  16. Traction Force Microscopy

    29 Jan 2015 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

    This is a tool for particle motion tracking with respect to physical forces.

    http://nanohub.org/resources/parttrack

  17. [Illinois]: Avoidance Learn Simulation

    01 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance conditioning as reinforcement learning with two upper motoneurons (SUMO and FUMO).

    http://nanohub.org/resources/avoidlearn

  18. [Illinois]: Avoidance Learn Simulation with 'Call' Neuron

    01 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance learning as a reinforcement learning with two upper motoneurons (sumo and fumo) and one "call" neuron.

    http://nanohub.org/resources/avoidlearncall

  19. [Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights

    15 Aug 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.

    http://nanohub.org/resources/pertgradll

  20. [Illinois]: Error Gradient Estimations Due to Perturbation of One Weight at a Time

    09 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using perturbation of one weight at a time.

    http://nanohub.org/resources/pertgrad1by1