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Accurate Chemical Master Equation (ACME)
4.0 out of 5 stars
20 Jun 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang
Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in...
4.5 out of 5 stars
14 Mar 2008 | Tools | Contributor(s): Reza Toghraee, Umberto Ravaioli
Ion channel simulator
14 Feb 2008 | Tools | Contributor(s): David Papke, Reza Toghraee, Umberto Ravaioli, Ankit Raj
Simulates ion flow through a channel.
0.0 out of 5 stars
20 Jan 2010 | Tools | Contributor(s): Yang Zhao, Albert Liao, Eric Pop
Simulate field effect carrier mobility in back-gated CNTFET devices at low field
Illinois Tools: Basic Bulk Silicon Transport Data at 300K
24 Nov 2009 | Tools | Contributor(s): Kyeong-hyun Park, Mohamed Mohamed, Nahil Sobh
Calculations of doped bulk silicon transport data
Illinois Tools: NanoGromacs
29 Feb 2008 | Tools | Contributor(s): Dairui Chen, Derrick Kearney, Jay Mashl, Nahil Sobh, Eric Jakobsson
Implementation of the popular molecular dynamics software suite GROMACS
Illinois Tools: NanoGromacsDemo
08 Sep 2008 | Tools | Contributor(s): Dairui Chen, Derrick Kearney, Jay Mashl, Nahil Sobh, Eric Jakobsson
22 May 2009 | Tools | Contributor(s): Raheem Syed, Nahil Sobh, Umberto Ravaioli, Gabriel Popescu, Mohamed Mohamed
It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. It can read many image formats.
Molecular Dynamics Showcase
14 Oct 2013 | Tools | Contributor(s): Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev, George A. Howlett
View interesting features of a molecular dynamics trajectory file
Molecular Dynamics Showcase Builder
09 Nov 2015 | Tools | Contributor(s): Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li
Tool to create showcases for the Molecular Dynamics Showcase viewer.
5.0 out of 5 stars
22 Jan 2014 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser
Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.
24 Sep 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain
Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.
07 Mar 2014 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk
Nanoindentation for Mechanical Characterization of Soft Materials
10 Jul 2008 | Tools | Contributor(s): Feifei Lian, Feifei Lian, Feifei Lian
This tool performs a self-consistent simulation of the current-voltage curve of a metallic single-wall carbon nanotube with Joule heating.
Quantum and Semi-classical Electrostatics Simulation of SOI Trigates
04 Mar 2008 | Tools | Contributor(s): Hyung-Seok Hahm, Andres Godoy
Generate quantum/semi-classical electrostatic simulation results for a simple Trigate structure
Traction Force Microscopy
29 Jan 2015 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi
This is a tool for particle motion tracking with respect to physical forces.
[Illinois]: Avoidance Learn Simulation
01 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson
This script simulates avoidance conditioning as reinforcement learning with two upper motoneurons (SUMO and FUMO).
[Illinois]: Avoidance Learn Simulation with 'Call' Neuron
This script simulates avoidance learning as a reinforcement learning with two upper motoneurons (sumo and fumo) and one "call" neuron.
[Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights
15 Aug 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.
[Illinois]: Error Gradient Estimations Due to Perturbation of One Weight at a Time
09 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool trains two-layered networks of sigmoidal units to associate patterns using perturbation of one weight at a time.