
[Illinois] Cancer Community Symposium 2012: A Sensitivity Scale for Targeting T Cells with Chimeric Antigen Receptors (CAR) and Bispecific T Cell Engagers (BiTE)
09 May 2012  Online Presentations  Contributor(s): Jennifer Stone
Using a patients immune system to target cancer and maintain longterm surveillance is an attractive goal. Although T cells can respond potently to tumors, immune tolerance mechanisms often result...
http://nanohub.org/resources/13941

[Illinois] Cancer Community Symposium 2012: DriveRank: Discovering PatientSpecific Driver Mutations
09 May 2012  Online Presentations  Contributor(s): Jack Pu Hou
One of the pressing challenges in cancer genomics is to distinguish driver mutations (i.e. mutations involved in tumorigenesis) and passenger mutations (i.e. functionally neutral mutations)....
http://nanohub.org/resources/13939

[Illinois] Cancer Community Symposium 2012: Elevated Estrogen Signaling Drives Tumorigenesis in a Novel Animal Model for Ovarian Epithelial Cancer
09 May 2012  Online Presentations  Contributor(s): Mary Jo Laws
We generated a mouse model where aberrant estrogen receptor alpha (Esr1) signaling in the hypothalamopituitaryovarian axis leads to ovarian tumorigenesis. In this model, termed Esr1d/d, the Esr1...
http://nanohub.org/resources/13938

2010 NanoBiophotonics Summer School at the University of Illinois at UrbanaChampaign
20 Sep 2010  Workshops  Contributor(s): Gabriel Popescu, Stephen Boppart, Rohit Bhargava, Logan Liu, Nahil Sobh
The 2010 summer school covers: Principles of NanoBiophotonics Technology and methods of investigation Current research (e.g. biomolecular sensing, nanoprobes, nonlinear microscopy, nanoscopy,...
http://nanohub.org/resources/9592

A Fast Multigrid Approach for Solving the Helmholtz Equation with a Point Source
04 Feb 2016  Online Presentations  Contributor(s): Eran Treister
Solving the discretized Helmholtz equations with high wave numbers in large dimensions is a challenging task. However, in many scenarios, the solution of these equations is required for a point...
http://nanohub.org/resources/23504

A Massively Parallel Semicoarsening Multigrid for 3D Reservoir Simulation on Multicore and MultiGPU Architectures
04 Feb 2016  Online Presentations  Contributor(s): Abdulrahman Manea
In this work, we have designed and implemented a massively parallel version of the Semicoarsening Black Box Multigrid Solver [1], which is capable of handling highly heterogeneous and anisotropic...
http://nanohub.org/resources/23474

A Multigrid Method for the SelfAdjoint Angular Flux Form of the RadiationTransport Equation Based on Cellwise Block Jacobi Iteration
04 Feb 2016  Online Presentations  Contributor(s): Jeffrey Densmore
Cellwise block Jacobi iteration is a technique for radiationtransport calculations in which the angular flux for all directions is solved for simultaneously within a spatial cell with the angular...
http://nanohub.org/resources/23481

A Performance Comparison of Algebraic Multigrid Preconditioners on GPUs and MIC
04 Feb 2016  Online Presentations  Contributor(s): Karl Rupp
Algebraic multigrid (AMG) preconditioners for accelerators such as graphics processing units (GPUs) and Intel's manyintegrated core (MIC) architecture typically require a careful,...
http://nanohub.org/resources/23485

A Scalable Algorithm for Inverse Medium Problems with Multiple Sources
04 Feb 2016  Online Presentations  Contributor(s): Keith Kelly
We consider the problem of acoustic scattering as described by the freespace, timeharmonic scalar wave equation given...
http://nanohub.org/resources/23498

Accurate Chemical Master Equation (ACME)
20 Jun 2013  Tools  Contributor(s): Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang
Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in...
http://nanohub.org/resources/fbsdcme

Application of Multigrid Techniques to Magnetic and Electromagnetic Systems
04 Feb 2016  Online Presentations  Contributor(s): Benjamin Cowan
We discuss the use of multigrid techniques for several novel systems related to electromagnetics. One of these is the magnetostatic problem, in which systems can involve highly anisotropic and...
http://nanohub.org/resources/23489

BioSensorLab
28 Mar 2008  Tools  Contributor(s): Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain
BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.
http://nanohub.org/resources/senstran

cadnano to PDB File Converter
13 Jan 2014  Tools  Contributor(s): Jejoong Yoo, AbderRahman N Sobh, ChenYu Li, Aleksei Aksimentiev
Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.
http://nanohub.org/resources/cadnanocvrt

Compatible Relaxation Based GeometricAlgebraic Multigrid
04 Feb 2016  Online Presentations  Contributor(s): Fei Cao
We develop compatible relaxation algorithms for smoothed aggregationbased multigrid coarsening. In the proposed method, we use the geometry of the given discrete problem on the finest level to...
http://nanohub.org/resources/23506

DataCentric Models for Multilevel Algorithms
07 Feb 2016  Online Presentations  Contributor(s): Samuel Guiterrez
Today, computational scientists must contend with a diverse set of supercomputer architectures that are capable of exposing unprecedented levels of parallelism and complexity. Effectively placing,...
http://nanohub.org/resources/23532

DBR Laser Simulator
08 Sep 2012  Tools  Contributor(s): Nikhil Sancheti, Lynford Goddard, Christopher Adam Edwards
Describes properties of a GaAs/AlGaAs DBR laser
http://nanohub.org/resources/dbrlaser

Discretization of Elliptic Differential Equations Using Sparse Grids and Prewavelets
04 Feb 2016  Online Presentations  Contributor(s): Christoph Pflaum
Sparse grids can be used to discretize second order elliptic differential equations on a ddimensional cube. Using Galerkin discretization, we obtain a linear equation system...
http://nanohub.org/resources/23520

DIY BIOSENSORS Summer 2014 Workshop
08 Jul 2014  Workshops  Contributor(s): Kaustubh Bhalerao
Learn how to build a simple, low cost sensor to detect spoiled milk using simple materials that illustrate cool concepts such as microﬂuidics, sample processing and biodetection.
In...
http://nanohub.org/resources/21200

Geometric Multigrid for MHD Simulations with Nedelec Finite Elements on Tetrahedral Grids
04 Feb 2016  Online Presentations  Contributor(s): Chris Hansen
The MagnetoHydroDynamic (MHD) model is used extensively to simulate macroscopic plasma dynamics in Magnetic Confinement Fusion (MCF) devices. In these simulations, the span of time scales from...
http://nanohub.org/resources/23491

High Dimensional Uncertainty Quantification via Multilevel Monte Carlo
04 Feb 2016  Online Presentations  Contributor(s): Hillary Fairbanks
Multilevel Monte Carlo (MLMC) has been shown to be a cost effective way to compute moments of desired quantities of interest in stochastic partial differential equations when the uncertainty in...
http://nanohub.org/resources/23522