Tags: NanoBio Node

Resources (1-20 of 686)

  1. [Illinois] Cancer Community Symposium 2012: A Sensitivity Scale for Targeting T Cells with Chimeric Antigen Receptors (CAR) and Bispecific T Cell Engagers (BiTE)

    09 May 2012 | Online Presentations | Contributor(s): Jennifer Stone

    Using a patients immune system to target cancer and maintain long-term surveillance is an attractive goal. Although T cells can respond potently to tumors, immune tolerance mechanisms often result...

    http://nanohub.org/resources/13941

  2. [Illinois] Cancer Community Symposium 2012: DriveRank: Discovering Patient-Specific Driver Mutations

    09 May 2012 | Online Presentations | Contributor(s): Jack Pu Hou

    One of the pressing challenges in cancer genomics is to distinguish driver mutations (i.e. mutations involved in tumorigenesis) and passenger mutations (i.e. functionally neutral mutations)....

    http://nanohub.org/resources/13939

  3. [Illinois] Cancer Community Symposium 2012: Elevated Estrogen Signaling Drives Tumorigenesis in a Novel Animal Model for Ovarian Epithelial Cancer

    09 May 2012 | Online Presentations | Contributor(s): Mary Jo Laws

    We generated a mouse model where aberrant estrogen receptor alpha (Esr1) signaling in the hypothalamo-pituitary-ovarian axis leads to ovarian tumorigenesis. In this model, termed Esr1d/d, the Esr1...

    http://nanohub.org/resources/13938

  4. 2010 Nano-Biophotonics Summer School at the University of Illinois at Urbana-Champaign

    20 Sep 2010 | Workshops | Contributor(s): Gabriel Popescu, Stephen Boppart, Rohit Bhargava, Logan Liu, Nahil Sobh

    The 2010 summer school covers: Principles of Nano-Biophotonics Technology and methods of investigation Current research (e.g. biomolecular sensing, nanoprobes, nonlinear microscopy, nanoscopy,...

    http://nanohub.org/resources/9592

  5. A Fast Multigrid Approach for Solving the Helmholtz Equation with a Point Source

    04 Feb 2016 | Online Presentations | Contributor(s): Eran Treister

    Solving the discretized Helmholtz equations with high wave numbers in large dimensions is a challenging task. However, in many scenarios, the solution of these equations is required for a point...

    http://nanohub.org/resources/23504

  6. A Massively Parallel Semicoarsening Multigrid for 3D Reservoir Simulation on Multi-core and Multi-GPU Architectures

    04 Feb 2016 | Online Presentations | Contributor(s): Abdulrahman Manea

    In this work, we have designed and implemented a massively parallel version of the Semicoarsening Black Box Multigrid Solver [1], which is capable of handling highly heterogeneous and anisotropic...

    http://nanohub.org/resources/23474

  7. A Multigrid Method for the Self-Adjoint Angular Flux Form of the Radiation-Transport Equation Based on Cellwise Block Jacobi Iteration

    04 Feb 2016 | Online Presentations | Contributor(s): Jeffrey Densmore

    Cellwise block Jacobi iteration is a technique for radiation-transport calculations in which the angular flux for all directions is solved for simultaneously within a spatial cell with the angular...

    http://nanohub.org/resources/23481

  8. A Performance Comparison of Algebraic Multigrid Preconditioners on GPUs and MIC

    04 Feb 2016 | Online Presentations | Contributor(s): Karl Rupp

    Algebraic multigrid (AMG) preconditioners for accelerators such as graphics processing units (GPUs) and Intel's many-integrated core (MIC) architecture typically require a careful,...

    http://nanohub.org/resources/23485

  9. A Scalable Algorithm for Inverse Medium Problems with Multiple Sources

    04 Feb 2016 | Online Presentations | Contributor(s): Keith Kelly

    We consider the problem of acoustic scattering as described by the free-space, time-harmonic scalar wave equation given...

    http://nanohub.org/resources/23498

  10. Application of Multigrid Techniques to Magnetic and Electromagnetic Systems

    04 Feb 2016 | Online Presentations | Contributor(s): Benjamin Cowan

    We discuss the use of multigrid techniques for several novel systems related to electromagnetics. One of these is the magnetostatic problem, in which systems can involve highly anisotropic and...

    http://nanohub.org/resources/23489

  11. BioSensorLab

    14 Aug 2006 | Tools | Contributor(s): Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain

    BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.

    http://nanohub.org/resources/senstran

  12. cadnano to PDB File Converter

    13 Nov 2013 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

    http://nanohub.org/resources/cadnanocvrt

  13. Compatible Relaxation Based Geometric-Algebraic Multigrid

    04 Feb 2016 | Online Presentations | Contributor(s): Fei Cao

    We develop compatible relaxation algorithms for smoothed aggregation-based multigrid coarsening. In the proposed method, we use the geometry of the given discrete problem on the finest level to...

    http://nanohub.org/resources/23506

  14. Data-Centric Models for Multilevel Algorithms

    07 Feb 2016 | Online Presentations | Contributor(s): Samuel Guiterrez

    Today, computational scientists must contend with a diverse set of supercomputer architectures that are capable of exposing unprecedented levels of parallelism and complexity. Effectively placing,...

    http://nanohub.org/resources/23532

  15. DBR Laser Simulator

    07 Sep 2012 | Tools | Contributor(s): Nikhil Sancheti, Lynford Goddard, Christopher Adam Edwards

    Describes properties of a GaAs/AlGaAs DBR laser

    http://nanohub.org/resources/dbrlaser

  16. Discretization of Elliptic Differential Equations Using Sparse Grids and Prewavelets

    04 Feb 2016 | Online Presentations | Contributor(s): Christoph Pflaum

    Sparse grids can be used to discretize second order elliptic differential equations on a d-dimensional cube. Using Galerkin discretization, we obtain a linear equation system...

    http://nanohub.org/resources/23520

  17. DIY BIOSENSORS Summer 2014 Workshop

    08 Jul 2014 | Workshops | Contributor(s): Kaustubh Bhalerao

    Learn how to build a simple, low cost sensor to detect spoiled milk using simple materials that illustrate cool concepts such as microfluidics, sample processing and biodetection. In...

    http://nanohub.org/resources/21200

  18. Finite Buffer dCME (fb-dCME)

    20 May 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Jie Liang, Nahil Sobh

    Finite Buffer Method for Direct Solution of Discrete Chemical Master Equation (fb-dCME)

    http://nanohub.org/resources/fbsdcme

  19. Geometric Multigrid for MHD Simulations with Nedelec Finite Elements on Tetrahedral Grids

    04 Feb 2016 | Online Presentations | Contributor(s): Chris Hansen

    The Magneto-HydroDynamic (MHD) model is used extensively to simulate macroscopic plasma dynamics in Magnetic Confinement Fusion (MCF) devices. In these simulations, the span of time scales from...

    http://nanohub.org/resources/23491

  20. High Dimensional Uncertainty Quantification via Multilevel Monte Carlo

    04 Feb 2016 | Online Presentations | Contributor(s): Hillary Fairbanks

    Multilevel Monte Carlo (MLMC) has been shown to be a cost effective way to compute moments of desired quantities of interest in stochastic partial differential equations when the uncertainty in...

    http://nanohub.org/resources/23522