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[Illinois] Cancer Community Symposium 2012: A Sensitivity Scale for Targeting T Cells with Chimeric Antigen Receptors (CAR) and Bispecific T Cell Engagers (BiTE)
09 May 2012 | Online Presentations | Contributor(s): Jennifer Stone
Using a patients immune system to target cancer and maintain long-term surveillance is an attractive goal. Although T cells can respond potently to tumors, immune tolerance mechanisms often result...
[Illinois] Cancer Community Symposium 2012: DriveRank: Discovering Patient-Specific Driver Mutations
09 May 2012 | Online Presentations | Contributor(s): Jack Pu Hou
One of the pressing challenges in cancer genomics is to distinguish driver mutations (i.e. mutations involved in tumorigenesis) and passenger mutations (i.e. functionally neutral mutations)....
[Illinois] Cancer Community Symposium 2012: Elevated Estrogen Signaling Drives Tumorigenesis in a Novel Animal Model for Ovarian Epithelial Cancer
09 May 2012 | Online Presentations | Contributor(s): Mary Jo Laws
We generated a mouse model where aberrant estrogen receptor alpha (Esr1) signaling in the hypothalamo-pituitary-ovarian axis leads to ovarian tumorigenesis. In this model, termed Esr1d/d, the Esr1...
2010 Nano-Biophotonics Summer School at the University of Illinois at Urbana-Champaign
20 Sep 2010 | Workshops | Contributor(s): Gabriel Popescu, Stephen Boppart, Rohit Bhargava, Logan Liu, Nahil Sobh
The 2010 summer school covers: Principles of Nano-Biophotonics Technology and methods of investigation Current research (e.g. biomolecular sensing, nanoprobes, nonlinear microscopy, nanoscopy,...
Jul 29 2013
2013 BioNanotechnology Summer Institute
A Fast Multigrid Approach for Solving the Helmholtz Equation with a Point Source
04 Feb 2016 | Online Presentations | Contributor(s): Eran Treister
Solving the discretized Helmholtz equations with high wave numbers in large dimensions is a challenging task. However, in many scenarios, the solution of these equations is required for a point...
A Massively Parallel Semicoarsening Multigrid for 3D Reservoir Simulation on Multi-core and Multi-GPU Architectures
04 Feb 2016 | Online Presentations | Contributor(s): Abdulrahman Manea
In this work, we have designed and implemented a massively parallel version of the Semicoarsening Black Box Multigrid Solver , which is capable of handling highly heterogeneous and anisotropic...
A Multigrid Method for the Self-Adjoint Angular Flux Form of the Radiation-Transport Equation Based on Cellwise Block Jacobi Iteration
04 Feb 2016 | Online Presentations | Contributor(s): Jeffrey Densmore
Cellwise block Jacobi iteration is a technique for radiation-transport calculations in which the angular flux for all directions is solved for simultaneously within a spatial cell with the angular...
A Performance Comparison of Algebraic Multigrid Preconditioners on GPUs and MIC
04 Feb 2016 | Online Presentations | Contributor(s): Karl Rupp
Algebraic multigrid (AMG) preconditioners for accelerators such as graphics processing units (GPUs) and Intel's many-integrated core (MIC) architecture typically require a careful,...
A Scalable Algorithm for Inverse Medium Problems with Multiple Sources
04 Feb 2016 | Online Presentations | Contributor(s): Keith Kelly
We consider the problem of acoustic scattering as described by the free-space, time-harmonic scalar wave equation given by (0.1) along with radiation boundary conditions. Here, is a...
Accurate Chemical Master Equation (ACME)
20 Jun 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang
Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in...
Apr 15 2013
Aplication deadline for the 2013 BioNanotechnology Summer Institute
Application of Multigrid Techniques to Magnetic and Electromagnetic Systems
04 Feb 2016 | Online Presentations | Contributor(s): Benjamin Cowan
We discuss the use of multigrid techniques for several novel systems related to electromagnetics. One of these is the magnetostatic problem, in which systems can involve highly anisotropic and...
28 Mar 2008 | Tools | Contributor(s): Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain, Mohammad Ryyan Khan, Mohammad Ryyan Khan
BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.
cadnano to PDB File Converter
13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev
Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.
Compatible Relaxation Based Geometric-Algebraic Multigrid
04 Feb 2016 | Online Presentations | Contributor(s): Fei Cao
We develop compatible relaxation algorithms for smoothed aggregation-based multigrid coarsening. In the proposed method, we use the geometry of the given discrete problem on the finest level to...
Data-Centric Models for Multilevel Algorithms
07 Feb 2016 | Online Presentations | Contributor(s): Samuel Guiterrez
Today, computational scientists must contend with a diverse set of supercomputer architectures that are capable of exposing unprecedented levels of parallelism and complexity. Effectively placing,...
DBR Laser Simulator
08 Sep 2012 | Tools | Contributor(s): Nikhil Sancheti, Lynford Goddard, Christopher Adam Edwards
Describes properties of a GaAs/AlGaAs DBR laser
Discretization of Elliptic Differential Equations Using Sparse Grids and Prewavelets
04 Feb 2016 | Online Presentations | Contributor(s): Christoph Pflaum
Sparse grids can be used to discretize second order elliptic differential equations on a d-dimensional cube. Using Galerkin discretization, we obtain a linear equation system...