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Jeevan Patra
https://nanohub.org/members/392378
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LegoGen
05 Feb 2016 | | Contributor(s):: Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev
Tool workflow for building DNA Brick structures automatically.
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cadnano to PDB File Converter
13 Nov 2013 | | Contributor(s):: Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev
Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.
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Functionalization Workbench
30 Aug 2013 | | Contributor(s):: AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev
Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.
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[Illinois] Interdisciplinary Symposium on Advanced Nano/Biosystems (Design, Fabrication, and Characterization)
27 Sep 2013 |
Symposium Dates and LocationWednesday, September 25-Friday, September 27, 2013Frederick Seitz Materials Research Laboratory, University of Illinois at Urbana-ChampaignUrbana, Illinois, USA Program Symposium Focus:Nano/bio systems have...
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[Illinois] Physics 550 Biomolecular Physics
03 Sep 2013 | | Contributor(s):: Klaus Schulten, Taekjip Ha
Physical concepts governing the structure and function of biological macromolecules; general properties, spatial structure, energy levels, dynamics and functions, and relation to other complex physical systems such as glasses; recent research in biomolecular physics;...
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[Illinois] Molecular and Multiscale Simulation Summer School
08 May 2013 | | Contributor(s):: NanoBio Node
This Summer School will train students in molecular simulation and simulation at multiple time and length scales. Instruction will be provided on quantum Monte Carlo simulation, molecular dynamics, coarse-grained simulations, and multiscale simulations with opportunities for hands-on experience...
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[Illinois] Coarse-grained Simulation of Ion Channels
29 Dec 2012 | | Contributor(s):: Umberto Ravaioli
This Summer School will train students in molecular simulation and simulation at multiple time and length scales. Instruction will be provided on quantum Monte Carlo simulation, molecular dynamics, coarse-grained simulations, and multiscale simulations with opportunities for hands-on experience...
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[Illinois] Molecular Dynamics Software (NAMD)
19 Jun 2012 | | Contributor(s):: Emad Tajkhorshid
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[Illinois] Coarse-grained / Multiscale Simulation Software (NAMD)
19 Jun 2012 | | Contributor(s):: Emad Tajkhorshid
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Stretching simulation of an alpha-helical protein domain
10 Jan 2011 | | Contributor(s):: Markus Buehler, Justin Riley, Joo-Hyoung Lee, Jeffrey C Grossman
Uses steered molecular dynamics (SMD) to apply a tensile load to the ends of a molecule (such as an alpha-helical protein domain)
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Illinois Phys550 Molecular Biophysics Lecture 2: Compartmentalization of Cells, Photosynthesis I
26 Jan 2010 | | Contributor(s):: Klaus Schulten
Compartmentalization of cells, photosynthesis (part 1 of 2)
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Illinois Phys550 Molecular Biophysics
25 Jan 2010 | | Contributor(s):: Klaus Schulten
Physical concepts governing the structure and function of biological macromolecules; general properties, spatial structure, energy levels, dynamics and functions, and relation to other complex physical systems such as glasses; recent research in biomolecular physics; physical techniques and...