Tags: nano/bio

Resources (21-40 of 430)

  1. nanoDDSCAT

    23 Apr 2013 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

    Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

    http://nanohub.org/resources/dda

  2. cadnano to PDB File Converter

    13 Nov 2013 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

    http://nanohub.org/resources/cadnanocvrt

  3. Functionalization Workbench

    30 Aug 2013 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

    http://nanohub.org/resources/partsub

  4. [Illinois] Graphene Synthesis from Biochar using Wet Chemical Treatment Process

    17 Dec 2013 | Online Presentations | Contributor(s): Sriraam Chandrasekaran

    Biochar is a major by-product from pyrolysis and gasification of biomass. Biochar finds potential applications in soil amendment, carbon sequestration, super capacitors, adsorbents, etc. However,...

    http://nanohub.org/resources/19482

  5. Tensile Mechanics of alpha-Helical Polypeptides

    30 Aug 2013 | Tools | Contributor(s): Korosh Torabi, George C. Schatz

    This model is capable of making quantitatively accurate predictions of force-extension behavior of a given helix-forming polypeptide sequence including its dependence on pH, temperature and ionic...

    http://nanohub.org/resources/ahpull

  6. Molecular Dynamics Showcase

    06 Jul 2013 | Tools | Contributor(s): Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev

    View interesting features of a molecular dynamics trajectory file

    http://nanohub.org/resources/mdshowcase

  7. [Illinois] Physics 550 Biomolecular Physics

    05 Sep 2013 | Courses | Contributor(s): Klaus Schulten, Taekjip Ha

        Physical concepts governing the structure and function of biological macromolecules; general properties, spatial structure, energy levels, dynamics and functions, and...

    http://nanohub.org/resources/19299

  8. Neural Systems Modeling Ch10-13 Master Tool

    02 Aug 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node

    Combination of all tools used in Chapters 10-13 of Neural Systems Modeling by Anastasio

    http://nanohub.org/resources/nsmch10master

  9. [Illinois]: Neural Systems Modeling Ch 6-9 Master Tool

    26 Jul 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node

    Combination of all tools used in Chapters 6-9 of Neural Systems Modeling by Anastasio

    http://nanohub.org/resources/nsmch6master

  10. [Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights

    07 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.

    http://nanohub.org/resources/pertgradll

  11. [Illinois]: Perturbative Reinforcement Learning to Develop Distributed Representations

    10 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains three-layered networks of sigmoidal units to associate patterns.

    http://nanohub.org/resources/pertdistrep

  12. [Illinois]: Perturbative Reinforcement Learning Using Directed Drift

    10 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using a real-valued adaptation of the directed drift algorithm.

    http://nanohub.org/resources/pertdd

  13. [Illinois]: Temporal Difference, Iterative Dynamic Programming, and Least Mean Squares

    11 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson

    This tool updates state values using the Temporal Difference Algorithm.

    http://nanohub.org/resources/tempdiff

  14. Crystalline Cellulose - Atomistic Toolkit

    17 Jul 2013 | Tools | Contributor(s): Mateo Gómez Zuluaga, Robert J. Moon, Fernando Luis Dri, Pablo Daniel Zavattieri

    Crystalline Cellulose - Atomistic Toolkit

    http://nanohub.org/resources/ccamt

  15. [Illinois] GEM4 Bionanotechnology Summer Institute 2013

    01 Aug 2013 | Workshops

    INSTITUTE FOCUS: Cancer Nanotechnology and Cellular Mechanics OBJECTIVES The overall objective is to enhance the ability to address overarching challenges in the areas of Cancer...

    http://nanohub.org/resources/19040

  16. [Illinois]: Direction Selectivity

    13 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool implements a simple direction selective network.

    http://nanohub.org/resources/dirselectivity

  17. [Illinois]: Predict Correct Set Up

    15 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool sets up a predictor-corrector model of target tracking

    http://nanohub.org/resources/predcorsetup

  18. [Illiniois]: SynchUp

    16 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool computes synchronous updates of autoassociative networks.

    http://nanohub.org/resources/synchup

  19. [Illinois]: AsynchUp

    16 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This tool computes asynchronous updates of autoassociative networks.

    http://nanohub.org/resources/asynchup

  20. [Illinois] KohonenSOM

    09 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, Jessica S Johnson, NanoBio Node

    This tool implements the Kohonen self-organizing map (SOM) algorithm

    http://nanohub.org/resources/kohonensom