Tags: nano/bio

Resources (1-20 of 456)

  1. Atomistic Polymer Workflow Notebook

    19 Oct 2017 | Tools | Contributor(s): Benjamin P Haley

    Run PolymerModeler and nuSIMM tools to create atomistic polymer systems

    http://nanohub.org/resources/polymerwfnb

  2. Mechanics of Crystalline Nano Cellulose Nanofilm

    08 Aug 2017 | Tools | Contributor(s): Joshua Leonardo, Mehdi Shishehbor, Pablo Daniel Zavattieri

    Simulation of tensile tests on your own Crystalline Nano Cellulose structures.

    http://nanohub.org/resources/cnc

  3. Fundamental Limits to the Precision of Multicellular Sensing

    27 Jun 2017 | Online Presentations | Contributor(s): Andrew Mugler

    Here we address, with both theory and experiments, whether cell-cell communication improves concentration- and gradient-sensing precision. We develop a minimal model of collective sensing by cells...

    http://nanohub.org/resources/26758

  4. Glass transition temperature notebook

    23 May 2017 | Tools | Contributor(s): Benjamin P Haley, Lorena Alzate-Vargas

    Calculate the glass transition temperature of an atomistic, amorphous system by running MD simulations in a notebook

    http://nanohub.org/resources/tgnb

  5. A profile of a Nano EPICS High School - Agawam High School

    10 May 2017 | Papers | Contributor(s): Tamecia Raishaun Jones

    This is a short profile of an EPICS High School that has found a way to integrate nano into its curriculum.  The profile describes how the teacher used her specialized background in marine...

    http://nanohub.org/resources/26512

  6. [Illinois] NanoBIO Interfaces

    13 Apr 2017 | Online Presentations | Contributor(s): Aleksei Aksimentiev

    11/29/2016 Light/Matter Interactions at the Nano-Bio Interface Workshop

    http://nanohub.org/resources/26287

  7. Unsupervised Learning to Unravel Differential Cell Fate Outcomes

    17 Jan 2017 | Online Presentations | Contributor(s): Kristen Naegle

    Cells are constantly receiving cues from the outside world and responding to them by altering their physiological fate by transducing this signal via intracellular biochemical networks. An...

    http://nanohub.org/resources/25400

  8. DNA Origami Visualization Tools

    11 Jan 2017 | Tools | Contributor(s): Jessica Nash

    Visualize DNA origami designs

    http://nanohub.org/resources/cadnanovis

  9. Tracking the Maturation of Organelles and Signaling Cluster with Quantitative Super-Resolution Microscopy

    15 Dec 2016 | Online Presentations | Contributor(s): Elias M. Puchner

    Quantitative Super-Resolution Microscopy is evolving into a powerful technique to study biological processes below the optical diffraction limit. However, a deeper understanding of the biological...

    http://nanohub.org/resources/25405

  10. Characterizing Noise in a Mathematical Model of the Adipogenic Transcriptional Network

    15 Dec 2016 | Online Presentations | Contributor(s): Alexandra Jilkine

    For each model, we first characterized overall susceptibility to noise by calculating the relative local sensitivity of AdipoQ and fat to various parameters. We then simulated the experiment done...

    http://nanohub.org/resources/25395

  11. Population Density Modulates Antibiotic Efficacy, Treatment Bistability, and the Evolution of Resistance in Bacteria

    13 Dec 2016 | Online Presentations | Contributor(s): Kevin Wood

    In this talk, I will discuss our recent work to address these questions by measuring real-time per capita growth of Enterococcus faecalis populations at fixed population densities using...

    http://nanohub.org/resources/25410

  12. Atomic Resolution Brownian Dynamics

    29 Nov 2016 | Tools | Contributor(s): Chris Maffeo

    GPU-accelerated Brownian dynamics simulation tool for biomolecular and nanotechnological systems

    http://nanohub.org/resources/arbd

  13. Tissue-Level Communication Through Patterning Of Intercellular Ca2+ Wave Dynamics

    22 Nov 2016 | Online Presentations | Contributor(s): Jeremiah J. Zartman

    Here we characterize periodic intercellular Ca2+ waves (ICWs) in a model organ system of epithelial growth and patterning—the Drosophila wing imaginal disc. We developed a novel regulated...

    http://nanohub.org/resources/25304

  14. Decoding the Epigenetic Language of Life

    22 Nov 2016 | Online Presentations | Contributor(s): Jian-Kang Zhu

    I will describe work in my lab that has shed light on how DNA methyltransferases and demethylases are guided to specific sequences, and how the antagonistic actions of the enzymes are coordinated...

    http://nanohub.org/resources/25291

  15. Coarse Graining of Crystalline Cellulose

    24 Oct 2016 | Tools | Contributor(s): Kuo Tian, Mehdi Shishehbor, Pablo Daniel Zavattieri

    Bio-inspired Crystalline Nano-Cellulose coarse graining toolkit

    http://nanohub.org/resources/cgmcc

  16. MidQBio 2016: 4th Midwest Quantitative Biology Symposium

    22 Oct 2016 | Workshops | Contributor(s): Srividya Iyer-Biswas, Tamara L. Kinzer-Ursem, Andrew Mugler

    The MidQBio Symposium aims to bring together research groups from around the Midwest with a shared interest in quantitative biology, and to help build a community of these researchers. The...

    http://nanohub.org/resources/25150

  17. The Epithelial-Mesenchymal Transition Its role in metastasis? Can Theory Help Cancer Biology?

    19 Oct 2016 | Online Presentations | Contributor(s): Herbert Levine

    In order to spread from the primary tumor to distant sites, cancer cells must undergo a coordinated change in their phenotypic properties referred to as the "epithelial-to-mesenchymal"...

    http://nanohub.org/resources/25121

  18. ENBIOS-2D Lab

    10 Oct 2016 | Tools | Contributor(s): Aldi Hoxha, Paolo Scarbolo, Andrea Cossettini, Federico Pittino, Luca Selmi

    A tool to simulate Ion Sensitive Field Effect Transistors in two dimensions

    http://nanohub.org/resources/biolabisfet

  19. Collective Sensing by Communicating Cells

    22 Sep 2016 | Online Presentations | Contributor(s): Andrew Mugler

    In this talk I will describe recent theoretical and experimental results in which this question is explored in several contexts, including gradient detection by groups of epithelial cells. I will...

    http://nanohub.org/resources/24995

  20. E304 L10.1.2: Nanobiotechnology - Information Storage and Retrieval in the Cell

    14 Jun 2016 | Online Presentations

    http://nanohub.org/resources/24022