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[Illinois] Cooperation and Construction: From Multicellularity to Eusociality
28 Apr 2014 | Online Presentations | Contributor(s): Corina Tarnita
The evolutionary trajectory of life on earth is one of increasing size and complexity. Yet the standard equations of evolutionary dynamics describe mutation and selection among similar organisms...
0.0 out of 5 stars
07 Mar 2014 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk
Nanoindentation for Mechanical Characterization of Soft Materials
5.0 out of 5 stars
22 Jan 2014 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser
Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.
cadnano to PDB File Converter
3.0 out of 5 stars
13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev
Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.
13 Jan 2014 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev
Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.
[Illinois] Graphene Synthesis from Biochar using Wet Chemical Treatment Process
17 Dec 2013 | Online Presentations | Contributor(s): Sriraam Chandrasekaran
Biochar is a major by-product from pyrolysis and gasification of biomass. Biochar finds potential applications in soil amendment, carbon sequestration, super capacitors, adsorbents, etc. However,...
Tensile Mechanics of alpha-Helical Polypeptides
23 Oct 2013 | Tools | Contributor(s): Korosh Torabi, George C. Schatz
This model is capable of making quantitatively accurate predictions of force-extension behavior of a given helix-forming polypeptide sequence including its dependence on pH, temperature and ionic...
Molecular Dynamics Showcase
14 Oct 2013 | Tools | Contributor(s): Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev, George A. Howlett
View interesting features of a molecular dynamics trajectory file
[Illinois] Physics 550 Biomolecular Physics
05 Sep 2013 | Courses | Contributor(s): Klaus Schulten, Taekjip Ha
Physical concepts governing the structure and function of biological macromolecules; general properties, spatial structure, energy levels, dynamics and functions, and...
Neural Systems Modeling Ch10-13 Master Tool
19 Aug 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node
Combination of all tools used in Chapters 10-13 of Neural Systems Modeling by Anastasio
[Illinois]: Neural Systems Modeling Ch 6-9 Master Tool
Combination of all tools used in Chapters 6-9 of Neural Systems Modeling by Anastasio
[Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights
15 Aug 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.
[Illinois]: Perturbative Reinforcement Learning to Develop Distributed Representations
This tool trains three-layered networks of sigmoidal units to associate patterns.
[Illinois]: Perturbative Reinforcement Learning Using Directed Drift
This tool trains two-layered networks of sigmoidal units to associate patterns using a real-valued adaptation of the directed drift algorithm.
[Illinois]: Temporal Difference, Iterative Dynamic Programming, and Least Mean Squares
05 Aug 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson
This tool updates state values using the Temporal Difference Algorithm.
Crystalline Cellulose - Atomistic Toolkit
05 Aug 2013 | Tools | Contributor(s): Mateo Gómez Zuluaga, Robert J. Moon, Fernando Luis Dri, Pablo Daniel Zavattieri
[Illinois] GEM4 Bionanotechnology Summer Institute 2013
01 Aug 2013 | Workshops
Cancer Nanotechnology and Cellular Mechanics
The overall objective is to enhance the ability to address overarching challenges in the areas of Cancer...
[Illinois]: Direction Selectivity
26 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool implements a simple direction selective network.
[Illinois]: Predict Correct Set Up
This tool sets up a predictor-corrector model of target tracking
This tool computes synchronous updates of autoassociative networks.