[Illinois]: Kohonen self-organizing map (SOM) algorithm

19 Jun 2013 | Tools | Contributor(s): Bara Saadah, John Feser, NanoBio Node, Jessica S Johnson

This too implements the Kohonen self-organizing map (SOM) algorithm

http://nanohub.org/resources/tonotopicsom

Locust-flight central pattern generator

06 Jun 2013 | Tools | Contributor(s): Lisa L Sproat, NanoBio Node, Jessica S Johnson

Implements a linear version of Wilson's model of the locust-flight central pattern generator

http://nanohub.org/resources/wilsoncpg

Two-unit oculomotor integrator

04 Jun 2013 | Tools | Contributor(s): Lisa L Sproat, Jessica S Johnson, NanoBio Node

Implements the two-unit model of the integrator of the oculomotor system

http://nanohub.org/resources/twounitintegrat

[Illinois]: Two leaky integrators in series

31 May 2013 | Tools | Contributor(s): Lisa L Sproat, John Feser, Jessica S Johnson, NanoBio Node

Implements a model having two units (leaky integrators) in series, each with recurrent, excitatory self-connections allowing the units to exert positive feedback on themselves

http://nanohub.org/resources/twoleakseries

Finitely Buffered Optimal State Space Enumeration and Discrete Chemical Master Equation Solution

20 May 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser

Solves dCME by optimal enumeration of finitely buffered state space.

http://nanohub.org/resources/fbsdcme

[Illinois]: Gill withdrawal habituation

13 May 2013 | Tools | Contributor(s): John Feser, Jessica S Johnson, NanoBio Node

A very simple simulation of habituation of the Aplysia gill withdrawal reflex.

http://nanohub.org/resources/habituationgwr

[Illinois] NBSS11: First Impressions; Ravikant Samantham

05 Jun 2013 | Online Presentations | Contributor(s): Nadia Jassim

Biophotonics Summer School 2011 May 21st - June 1st 2011 Urbana-Champaign, Illinois The Biophotonics Summer School brings together from a wide variety of disciplines to teach students about the …

http://nanohub.org/resources/18289

Pattern Formation in Bacterial Populations

03 May 2013 | Tools | Contributor(s): Ting Lu, John Feser, Nahil Sobh, Pratik Naik

Synthetic biology tool for engineering patterning systems.

http://nanohub.org/resources/patform

[Illinois] PCL Experiment Tutorial

10 Apr 2012 | Online Presentations

This experiment and technique is used for trapping and isolating single cells for studying cell motion and its subsequent displacement. Polyacrylamide gel is used in the PCL experiment to help with …

http://nanohub.org/resources/13774

[Illinois] Nanotechnology-Enabled Advances in Biomedical and Energy Research

10 Apr 2012 | Online Presentations

Nanotechnology-Enabled Advances in Biomedical and Energy Research The development of a method for interfacing high-performance devices with flexible, stretchable, and biocompatible materials could …

http://nanohub.org/resources/13776

[Illinois] Biosensing Summer Series 2010

02 Feb 2012 | Online Presentations

July 12 – July 23, 2010 at the University of Illinois at Urbana-Champaign Venue: Micro and Nanotechnology Laboratory (MNTL) Advances in informatics, nanotechnology, and deeper understanding of …

http://nanohub.org/resources/13019

[Illinois] BioNanotechnology Seminar Series Spring 2012: Analyzing Protein Complexes from Mammalian Cells at the Single Molecular Level

10 Apr 2012 | Online Presentations

Proteins perform most cellular functions in macromolecular complexes. Quantitative information on macromolecular complexes is scarce. The same protein often participates in different complexes to …

http://nanohub.org/resources/13759

[Illinois] BioNanotechnology Seminar Series Spring 2012: Mesenchymal Stem Cells Contribute to Vascular Growth in Skeletal Muscle in Response to Eccentric Exercise

10 Apr 2012 | Online Presentations

Tissue health is critically dependent on vascularization to support growth and function following injury. In addition to multiple implications in the regenerative potential of other tissues, …

http://nanohub.org/resources/13760

[Illinois] BioNanotechnology Seminar Series Spring 2012: Exploring Academic Collaboration with the University of Cape Coast, Ghana with the Global Health Initiative at UIUC

10 Apr 2012 | Online Presentations

The University of Illinois at Urbana-Champaign has a longstanding history of excellent research with regard to science and engineering, and the Global Health Initiative (GHI) at UIUC hopes to apply …

http://nanohub.org/resources/13758

[Illinois] BioNanotechnology Seminar Series Spring 2012: Direct Write Assembly of 3D Microperiodic Hydrogel Scaffolds For Stem Cell Culture and Tissue Engineering

10 Apr 2012 | Online Presentations

Stem cells have demonstrated remarkable potential for tissue engineering and regenerative medicine through their ability for self-renewal and controlled differentiation. However, the development of …

http://nanohub.org/resources/13761

[Illinois] BioNanotechnology Seminar Series Spring 2012: DNA Mediated Synthesis of Novel Gold Nanoflowers for Diagnostic and Therapeutic Applications

10 Apr 2012 | Online Presentations

My research is focused at exploring the applications of a new class of gold nanoflower structure that exhibits interesting cellular uptake properties, tunable size and optical properties, and an …

http://nanohub.org/resources/13757

Viscoelastic Shear Lag

08 May 2013 | Tools | Contributor(s): Nicholas Smith

A viscoelastic shear lag model is used to predict creep in short fiber composites.

http://nanohub.org/resources/shearlag

Nisin Diffusion Tool

08 Apr 2013 | Tools | Contributor(s): Andrew Blanchard, Ting Lu

Simulate cell fluorescence based on nisin concentration

http://nanohub.org/resources/nisindiffusion

[Illinois] Bionanotechnology Seminar Series Fall 2012: Mechanical Property Characterization for 3D Collagen Cancer Cell Cultures

21 Feb 2013 | Online Presentations | Contributor(s): Yue Wang

The tumor microenvironment is mechanically modified during cancer progression. Imaging of tumor mechanical environment will provide new information for early cancer diagnosis. However, it is less …

http://nanohub.org/resources/16961

Exciton Dynamics Lab for Light-Harvesting Complexes (GPU-HEOM)

18 Dec 2012 | Tools | Contributor(s): Christoph Kreisbeck, Tobias Kramer

Non-Markovian calculation of absorption spectra, 2d echo-spectra, coherences and polulation dynamics for light-harvesting complexes.

http://nanohub.org/resources/gpuheompop