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[Illinois]: Posterior probabilities of hypothetical fish classes
28 Jun 2013 | Tools | Contributor(s): Lisa Sproat, Jessica S Johnson, NanoBio Node
Computes the posterior probabilities of each of three hypothetical fish classes using Bayes' rule
http://nanohub.org/resources/fishbayesrule
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[Illinois]: Fish classification using back-propagation
28 Jun 2013 | Tools | Contributor(s): Lisa Sproat, Jessica S Johnson, NanoBio Node
Trains a three-layered network of sigmoidal units using back-propagation to classify fish according to their lengths
http://nanohub.org/resources/fishbackprop
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[Illinois]: Avoidance Learn Simulation with 'Call' Neuron
25 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson
This script simulates avoidance learning as a reinforcement learning with two upper motoneurons (sumo and fumo) and one "call" neuron.
http://nanohub.org/resources/avoidlearncall
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[Illinois]: Avoidance Learn Simulation
20 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson
This script simulates avoidance conditioning as reinforcement learning with two upper motoneurons (SUMO and FUMO).
http://nanohub.org/resources/avoidlearn
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[Illinois]: Sigmoidal unit training with the delta rule
26 Jun 2013 | Tools | Contributor(s): Lisa Sproat, NanoBio Node, Jessica S Johnson
Uses the delta rule to train a single sigmoidal unit with feedback to simulate the responses of neurons in the parabigeminal nucleus
http://nanohub.org/resources/pbndeltarule
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Hydrodynamic Particle Trapping
14 Jun 2013 | Tools | Contributor(s): Melikhan tanyerim@illinois.edu Tanyeri, John Feser, Nahil Sobh
Simulates the motion of a nanoparticle in a hydrodynamic trap.
http://nanohub.org/resources/particletrap
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[Illinois]: Predictor-corrector simulation of parabigeminal nucleus neural responses
24 Jun 2013 | Tools | Contributor(s): Lisa Sproat, NanoBio Node, Jessica S Johnson
Implements a predictor-corrector simulation of the responses of neurons in the parabigeminal nucleus
http://nanohub.org/resources/pbnpredict
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[Illinois]: Midbrain dopamine neuron responses to temporal-difference learning
21 Jun 2013 | Tools | Contributor(s): Lisa Sproat, Jessica S Johnson, NanoBio Node
Simulates the responses of midbrain dopamine neurons using temporal difference learning
http://nanohub.org/resources/midbraindopamin
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[Illinois]: Velocity storage and leakage
04 Jun 2013 | Tools | Contributor(s): Lisa L Sproat, Jessica S Johnson, NanoBio Node
Implements the parallel-pathway and positive-feedback models of velocity storage, and the negative-feedback model of velocity leakage
http://nanohub.org/resources/velstoreleak
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[Illinois]: Kohonen self-organizing map (SOM) algorithm
19 Jun 2013 | Tools | Contributor(s): Bara Saadah, John Feser, NanoBio Node, Jessica S Johnson
This too implements the Kohonen self-organizing map (SOM) algorithm
http://nanohub.org/resources/tonotopicsom
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Locust-flight central pattern generator
06 Jun 2013 | Tools | Contributor(s): Lisa L Sproat, NanoBio Node, Jessica S Johnson
Implements a linear version of Wilson's model of the locust-flight central pattern generator
http://nanohub.org/resources/wilsoncpg
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Two-unit oculomotor integrator
04 Jun 2013 | Tools | Contributor(s): Lisa L Sproat, Jessica S Johnson, NanoBio Node
Implements the two-unit model of the integrator of the oculomotor system
http://nanohub.org/resources/twounitintegrat
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[Illinois]: Two leaky integrators in series
31 May 2013 | Tools | Contributor(s): Lisa L Sproat, John Feser, Jessica S Johnson, NanoBio Node
Implements a model having two units (leaky integrators) in series, each with recurrent, excitatory self-connections allowing the units to exert positive feedback on themselves
http://nanohub.org/resources/twoleakseries
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Finite Buffer Method for Direct Solution of Discrete Chemical Master Equation
20 May 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser
Finite Buffer dCME
http://nanohub.org/resources/fbsdcme
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[Illinois]: Gill withdrawal habituation
13 May 2013 | Tools | Contributor(s): John Feser, Jessica S Johnson, NanoBio Node
A very simple simulation of habituation of the Aplysia gill withdrawal reflex.
http://nanohub.org/resources/habituationgwr
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[Illinois] NBSS11: First Impressions; Ravikant Samantham
12 Jun 2013 | Online Presentations | Contributor(s): Nadia Jassim
Biophotonics Summer School 2011May 21st - June 1st 2011 Urbana-Champaign, IllinoisThe Biophotonics Summer School brings together from a wide variety of disciplines to teach students about the...
http://nanohub.org/resources/18289
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Pattern Formation in Bacterial Populations
03 May 2013 | Tools | Contributor(s): Ting Lu, John Feser, Nahil Sobh, Pratik Naik
Synthetic biology tool for engineering patterning systems.
http://nanohub.org/resources/patform
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[Illinois] PCL Experiment Tutorial
15 May 2013 | Online Presentations
This experiment and technique is used for trapping and isolating single cells for studying cell motion and its subsequent displacement. Polyacrylamide gel is used in the PCL experiment to help...
http://nanohub.org/resources/13774
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[Illinois] Nanotechnology-Enabled Advances in Biomedical and Energy Research
15 May 2013 | Online Presentations | Contributor(s): Michael McAlpine
Nanotechnology-Enabled Advances in Biomedical and Energy ResearchThe development of a method for interfacing high-performance devices with flexible, stretchable, and biocompatible materials could...
http://nanohub.org/resources/13776
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[Illinois] Biosensing Summer Series 2010
14 May 2013 | Online Presentations
July 12 – July 23, 2010 at the University of Illinois at Urbana-ChampaignVenue: Micro and Nanotechnology Laboratory (MNTL)Advances in informatics, nanotechnology, and deeper understanding of...
http://nanohub.org/resources/13019