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0.0 out of 5 stars
07 Mar 2014 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk
Nanoindentation for Mechanical Characterization of Soft Materials
5.0 out of 5 stars
22 Jan 2014 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser
Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.
cadnano to PDB File Converter
3.0 out of 5 stars
13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev
Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.
13 Jan 2014 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev
Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.
[Illinois] Graphene Synthesis from Biochar using Wet Chemical Treatment Process
17 Dec 2013 | Online Presentations | Contributor(s): Sriraam Chandrasekaran
Biochar is a major by-product from pyrolysis and gasification of biomass. Biochar finds potential applications in soil amendment, carbon sequestration, super capacitors, adsorbents, etc. However,...
Tensile Mechanics of alpha-Helical Polypeptides
23 Oct 2013 | Tools | Contributor(s): Korosh Torabi, George C. Schatz
This model is capable of making quantitatively accurate predictions of force-extension behavior of a given helix-forming polypeptide sequence including its dependence on pH, temperature and ionic...
Molecular Dynamics Showcase
14 Oct 2013 | Tools | Contributor(s): Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev, George A. Howlett
View interesting features of a molecular dynamics trajectory file
[Illinois] Physics 550 Biomolecular Physics
05 Sep 2013 | Courses | Contributor(s): Klaus Schulten, Taekjip Ha
Physical concepts governing the structure and function of biological macromolecules; general properties, spatial structure, energy levels, dynamics and functions, and...
Neural Systems Modeling Ch10-13 Master Tool
19 Aug 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node
Combination of all tools used in Chapters 10-13 of Neural Systems Modeling by Anastasio
[Illinois]: Neural Systems Modeling Ch 6-9 Master Tool
Combination of all tools used in Chapters 6-9 of Neural Systems Modeling by Anastasio
[Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights
15 Aug 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.
[Illinois]: Perturbative Reinforcement Learning to Develop Distributed Representations
This tool trains three-layered networks of sigmoidal units to associate patterns.
[Illinois]: Perturbative Reinforcement Learning Using Directed Drift
This tool trains two-layered networks of sigmoidal units to associate patterns using a real-valued adaptation of the directed drift algorithm.
[Illinois]: Temporal Difference, Iterative Dynamic Programming, and Least Mean Squares
05 Aug 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson
This tool updates state values using the Temporal Difference Algorithm.
Crystalline Cellulose - Atomistic Toolkit
05 Aug 2013 | Tools | Contributor(s): Mateo Gómez Zuluaga, Robert J. Moon, Fernando Luis Dri, Pablo Daniel Zavattieri
[Illinois] GEM4 Bionanotechnology Summer Institute 2013
01 Aug 2013 | Workshops
Cancer Nanotechnology and Cellular Mechanics
The overall objective is to enhance the ability to address overarching challenges in the areas of Cancer...
[Illinois]: Direction Selectivity
26 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool implements a simple direction selective network.
[Illinois]: Predict Correct Set Up
This tool sets up a predictor-corrector model of target tracking
This tool computes synchronous updates of autoassociative networks.
26 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, NanoBio Node, Jessica S Johnson
This tool computes asynchronous updates of autoassociative networks.