
[Illinois]: Posterior probability of a target given input for two senses (Bayes')
01 Jul 2013  Contributor(s):: Lisa Sproat, Jessica S Johnson, NanoBio Node
Computes the posterior probability of a target given sensory input of two modalities (i.e., visual and auditory)

[Illinois]: Posterior probability of a target given input for two senses (delta)
01 Jul 2013  Contributor(s):: Lisa Sproat, Jessica S Johnson, NanoBio Node
Trains a single sigmoidal unit using the delta rule to estimate posterior target probability given sensory input of two modalities (i.e., visual and auditory)

[Illinois]: Posterior probabilities of hypothetical fish classes
28 Jun 2013   Contributor(s):: Lisa Sproat, Jessica S Johnson, NanoBio Node
Computes the posterior probabilities of each of three hypothetical fish classes using Bayes' rule

[Illinois]: Fish classification using backpropagation
28 Jun 2013   Contributor(s):: Lisa Sproat, Jessica S Johnson, NanoBio Node
Trains a threelayered network of sigmoidal units using backpropagation to classify fish according to their lengths

[Illinois]: Avoidance Learn Simulation with 'Call' Neuron
25 Jun 2013   Contributor(s):: AbderRahman N Sobh, NanoBio Node, Jessica S Johnson
This script simulates avoidance learning as a reinforcement learning with two upper motoneurons (sumo and fumo) and one "call" neuron.

[Illinois]: Avoidance Learn Simulation
20 Jun 2013   Contributor(s):: AbderRahman N Sobh, NanoBio Node, Jessica S Johnson
This script simulates avoidance conditioning as reinforcement learning with two upper motoneurons (SUMO and FUMO).

[Illinois]: Sigmoidal unit training with the delta rule
26 Jun 2013   Contributor(s):: Lisa Sproat, NanoBio Node, Jessica S Johnson
Uses the delta rule to train a single sigmoidal unit with feedback to simulate the responses of neurons in the parabigeminal nucleus

Hydrodynamic Particle Trapping
14 Jun 2013   Contributor(s):: Melikhan tanyerim@illinois.edu Tanyeri, John Feser, Nahil Sobh
Simulates the motion of a nanoparticle in a hydrodynamic trap.

[Illinois]: Predictorcorrector simulation of parabigeminal nucleus neural responses
24 Jun 2013   Contributor(s):: Lisa Sproat, NanoBio Node, Jessica S Johnson
Implements a predictorcorrector simulation of the responses of neurons in the parabigeminal nucleus

[Illinois]: Midbrain dopamine neuron responses to temporaldifference learning
21 Jun 2013   Contributor(s):: Lisa Sproat, Jessica S Johnson, NanoBio Node
Simulates the responses of midbrain dopamine neurons using temporal difference learning

[Illinois]: Velocity storage and leakage
04 Jun 2013   Contributor(s):: Lisa L Sproat, Jessica S Johnson, NanoBio Node
Implements the parallelpathway and positivefeedback models of velocity storage, and the negativefeedback model of velocity leakage

[Illinois]: Kohonen selforganizing map (SOM) algorithm
19 Jun 2013   Contributor(s):: Bara Saadah, John Feser, NanoBio Node, Jessica S Johnson
This too implements the Kohonen selforganizing map (SOM) algorithm

Locustflight central pattern generator
06 Jun 2013   Contributor(s):: Lisa L Sproat, NanoBio Node, Jessica S Johnson
Implements a linear version of Wilson's model of the locustflight central pattern generator

Twounit oculomotor integrator
04 Jun 2013   Contributor(s):: Lisa L Sproat, Jessica S Johnson, NanoBio Node
Implements the twounit model of the integrator of the oculomotor system

[Illinois]: Two leaky integrators in series
31 May 2013   Contributor(s):: Lisa L Sproat, John Feser, Jessica S Johnson, NanoBio Node
Implements a model having two units (leaky integrators) in series, each with recurrent, excitatory selfconnections allowing the units to exert positive feedback on themselves

Accurate Chemical Master Equation (ACME)
20 May 2013   Contributor(s):: Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang
Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in biological networks.

[Illinois]: Gill withdrawal habituation
13 May 2013   Contributor(s):: John Feser, Jessica S Johnson, NanoBio Node
A very simple simulation of habituation of the Aplysia gill withdrawal reflex.

[Illinois] NBSS11: First Impressions; Ravikant Samantham
05 Jun 2013   Contributor(s):: Nadia Jassim
Biophotonics Summer School 2011May 21st  June 1st 2011 UrbanaChampaign, IllinoisThe Biophotonics Summer School brings together from a wide variety of disciplines to teach students about the biophotonics field. In 2011, some of the topics covered included principles of biophotonics, technology...

Pattern Formation in Bacterial Populations
03 May 2013   Contributor(s):: Ting Lu, John Feser, Nahil Sobh, Pratik Naik
Synthetic biology tool for engineering patterning systems.

[Illinois] PCL Experiment Tutorial
10 Apr 2012 
This experiment and technique is used for trapping and isolating single cells for studying cell motion and its subsequent displacement. Polyacrylamide gel is used in the PCL experiment to help with this purpose.