Tags: nano/bio

Tools (41-60 of 75)

  1. [Illinois]: Fish classification using back-propagation

    28 Jun 2013 | Tools | Contributor(s): Lisa Sproat, Jessica S Johnson, NanoBio Node

    Trains a three-layered network of sigmoidal units using back-propagation to classify fish according to their lengths

    http://nanohub.org/resources/fishbackprop

  2. [Illinois]: Avoidance Learn Simulation with 'Call' Neuron

    25 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance learning as a reinforcement learning with two upper motoneurons (sumo and fumo) and one "call" neuron.

    http://nanohub.org/resources/avoidlearncall

  3. [Illinois]: Avoidance Learn Simulation

    20 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance conditioning as reinforcement learning with two upper motoneurons (SUMO and FUMO).

    http://nanohub.org/resources/avoidlearn

  4. [Illinois]: Sigmoidal unit training with the delta rule

    26 Jun 2013 | Tools | Contributor(s): Lisa Sproat, NanoBio Node, Jessica S Johnson

    Uses the delta rule to train a single sigmoidal unit with feedback to simulate the responses of neurons in the parabigeminal nucleus

    http://nanohub.org/resources/pbndeltarule

  5. Hydrodynamic Particle Trapping

    14 Jun 2013 | Tools | Contributor(s): Melikhan tanyerim@illinois.edu Tanyeri, John Feser, Nahil Sobh

    Simulates the motion of a nanoparticle in a hydrodynamic trap.

    http://nanohub.org/resources/particletrap

  6. [Illinois]: Predictor-corrector simulation of parabigeminal nucleus neural responses

    24 Jun 2013 | Tools | Contributor(s): Lisa Sproat, NanoBio Node, Jessica S Johnson

    Implements a predictor-corrector simulation of the responses of neurons in the parabigeminal nucleus

    http://nanohub.org/resources/pbnpredict

  7. [Illinois]: Midbrain dopamine neuron responses to temporal-difference learning

    21 Jun 2013 | Tools | Contributor(s): Lisa Sproat, Jessica S Johnson, NanoBio Node

    Simulates the responses of midbrain dopamine neurons using temporal difference learning

    http://nanohub.org/resources/midbraindopamin

  8. [Illinois]: Velocity storage and leakage

    04 Jun 2013 | Tools | Contributor(s): Lisa L Sproat, Jessica S Johnson, NanoBio Node

    Implements the parallel-pathway and positive-feedback models of velocity storage, and the negative-feedback model of velocity leakage

    http://nanohub.org/resources/velstoreleak

  9. [Illinois]: Kohonen self-organizing map (SOM) algorithm

    21 Jun 2013 | Tools | Contributor(s): Bara Saadah, John Feser, NanoBio Node, Jessica S Johnson

    This too implements the Kohonen self-organizing map (SOM) algorithm

    http://nanohub.org/resources/tonotopicsom

  10. Locust-flight central pattern generator

    06 Jun 2013 | Tools | Contributor(s): Lisa L Sproat, NanoBio Node, Jessica S Johnson

    Implements a linear version of Wilson's model of the locust-flight central pattern generator

    http://nanohub.org/resources/wilsoncpg

  11. Two-unit oculomotor integrator

    04 Jun 2013 | Tools | Contributor(s): Lisa L Sproat, Jessica S Johnson, NanoBio Node

    Implements the two-unit model of the integrator of the oculomotor system

    http://nanohub.org/resources/twounitintegrat

  12. [Illinois]: Two leaky integrators in series

    31 May 2013 | Tools | Contributor(s): Lisa L Sproat, John Feser, Jessica S Johnson, NanoBio Node

    Implements a model having two units (leaky integrators) in series, each with recurrent, excitatory self-connections allowing the units to exert positive feedback on themselves

    http://nanohub.org/resources/twoleakseries

  13. Finite Buffer dCME (fb-dCME)

    20 May 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Jie Liang, Nahil Sobh

    Finite Buffer Method for Direct Solution of Discrete Chemical Master Equation (fb-dCME)

    http://nanohub.org/resources/fbsdcme

  14. [Illinois]: Gill withdrawal habituation

    13 May 2013 | Tools | Contributor(s): John Feser, Jessica S Johnson, NanoBio Node

    A very simple simulation of habituation of the Aplysia gill withdrawal reflex.

    http://nanohub.org/resources/habituationgwr

  15. Pattern Formation in Bacterial Populations

    03 May 2013 | Tools | Contributor(s): Ting Lu, John Feser, Nahil Sobh, Pratik Naik

    Synthetic biology tool for engineering patterning systems.

    http://nanohub.org/resources/patform

  16. Viscoelastic Shear Lag

    08 May 2013 | Tools | Contributor(s): Nicholas Smith

    A viscoelastic shear lag model is used to predict creep in short fiber composites.

    http://nanohub.org/resources/shearlag

  17. Nisin Diffusion Tool

    08 Apr 2013 | Tools | Contributor(s): Andrew Blanchard, Ting Lu

    Simulate cell fluorescence based on nisin concentration

    http://nanohub.org/resources/nisindiffusion

  18. Exciton Dynamics Lab for Light-Harvesting Complexes (GPU-HEOM)

    18 Dec 2012 | Tools | Contributor(s): Christoph Kreisbeck, Tobias Kramer

    Non-Markovian calculation of absorption spectra, 2d echo-spectra, coherences and polulation dynamics for light-harvesting complexes.

    http://nanohub.org/resources/gpuheompop

  19. Bio Composite Simulator

    13 Oct 2011 | Tools | Contributor(s): Sebastian Lee, Pablo Daniel Zavattieri, Alejandro Strachan

    Simulation mechanical response of bio composites using rigid particles

    http://nanohub.org/resources/nacresimulator

  20. ReaxFF

    20 Jun 2011 | Tools | Contributor(s): Michael Russo, Adri van Duin

    ReaxFF code for simulating atomic systems

    http://nanohub.org/resources/reaxff597a