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Tags: nano/bio

Tools (41-60 of 68)

  1. [Illinois]: Velocity storage and leakage

    04 Jun 2013 | Tools | Contributor(s): Lisa L Sproat, Jessica S Johnson, NanoBio Node

    Implements the parallel-pathway and positive-feedback models of velocity storage, and the negative-feedback model of velocity leakage

    http://nanohub.org/resources/velstoreleak

  2. [Illinois]: Kohonen self-organizing map (SOM) algorithm

    19 Jun 2013 | Tools | Contributor(s): Bara Saadah, John Feser, NanoBio Node, Jessica S Johnson

    This too implements the Kohonen self-organizing map (SOM) algorithm

    http://nanohub.org/resources/tonotopicsom

  3. Locust-flight central pattern generator

    06 Jun 2013 | Tools | Contributor(s): Lisa L Sproat, NanoBio Node, Jessica S Johnson

    Implements a linear version of Wilson's model of the locust-flight central pattern generator

    http://nanohub.org/resources/wilsoncpg

  4. Two-unit oculomotor integrator

    04 Jun 2013 | Tools | Contributor(s): Lisa L Sproat, Jessica S Johnson, NanoBio Node

    Implements the two-unit model of the integrator of the oculomotor system

    http://nanohub.org/resources/twounitintegrat

  5. [Illinois]: Two leaky integrators in series

    31 May 2013 | Tools | Contributor(s): Lisa L Sproat, John Feser, Jessica S Johnson, NanoBio Node

    Implements a model having two units (leaky integrators) in series, each with recurrent, excitatory self-connections allowing the units to exert positive feedback on themselves

    http://nanohub.org/resources/twoleakseries

  6. Finite Buffer dCME (fb-dCME)

    20 May 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Jie Liang

    Finite Buffer Method for Direct Solution of Discrete Chemical Master Equation (fb-dCME)

    http://nanohub.org/resources/fbsdcme

  7. [Illinois]: Gill withdrawal habituation

    13 May 2013 | Tools | Contributor(s): John Feser, Jessica S Johnson, NanoBio Node

    A very simple simulation of habituation of the Aplysia gill withdrawal reflex.

    http://nanohub.org/resources/habituationgwr

  8. Pattern Formation in Bacterial Populations

    03 May 2013 | Tools | Contributor(s): Ting Lu, John Feser, Nahil Sobh, Pratik Naik

    Synthetic biology tool for engineering patterning systems.

    http://nanohub.org/resources/patform

  9. Viscoelastic Shear Lag

    08 May 2013 | Tools | Contributor(s): Nicholas Smith

    A viscoelastic shear lag model is used to predict creep in short fiber composites.

    http://nanohub.org/resources/shearlag

  10. Nisin Diffusion Tool

    08 Apr 2013 | Tools | Contributor(s): Andrew Blanchard, Ting Lu

    Simulate cell fluorescence based on nisin concentration

    http://nanohub.org/resources/nisindiffusion

  11. Exciton Dynamics Lab for Light-Harvesting Complexes (GPU-HEOM)

    18 Dec 2012 | Tools | Contributor(s): Christoph Kreisbeck, Tobias Kramer

    Non-Markovian calculation of absorption spectra, 2d echo-spectra, coherences and polulation dynamics for light-harvesting complexes.

    http://nanohub.org/resources/gpuheompop

  12. Bio Composite Simulator

    13 Oct 2011 | Tools | Contributor(s): Sebastian Lee, Pablo Daniel Zavattieri, Alejandro Strachan

    Simulation mechanical response of bio composites using rigid particles

    http://nanohub.org/resources/nacresimulator

  13. ReaxFF

    20 Jun 2011 | Tools | Contributor(s): Michael Russo, Adri van Duin

    ReaxFF code for simulating atomic systems

    http://nanohub.org/resources/reaxff597a

  14. Bimodal Polymer Nano Brush

    12 Jul 2011 | Tools | Contributor(s): Rikkert Jan Nap, Fritzlaine Roche, Marcelo Carignano

    Structure and Thermodynamics of Bimodal Polymer Nano Brushes

    http://nanohub.org/resources/binbrush

  15. Nanoindentation close to an interface

    06 May 2011 | Tools | Contributor(s): Alvian Siswoyo, Marisol Koslowski

    Simulated the indentation force curve close to a perfectly bonded interface

    http://nanohub.org/resources/nanoin

  16. Stretching simulation of an alpha-helical protein domain

    10 Jan 2011 | Tools | Contributor(s): Markus Buehler, Justin Riley, Joo-Hyoung Lee, Jeffrey C Grossman

    Uses steered molecular dynamics (SMD) to apply a tensile load to the ends of a molecule (such as an alpha-helical protein domain)

    http://nanohub.org/resources/stretchmol

  17. Illinois Tool: FIONA (Fluorescence Imaging with One Nanometer Accuracy)

    01 Nov 2010 | Tools | Contributor(s): Paul R Selvin, Raheem Syed, Nahil Sobh

    Fluorescence Imaging with One Nanometer Accuracy

    http://nanohub.org/resources/fiona

  18. Protein Contact Maps

    22 Oct 2010 | Tools | Contributor(s): Benjamin Rafferty, Zachary Carl Flohr, Ashlie Martini

    Create and view protein contact maps and distance maps.

    http://nanohub.org/resources/contactmaps

  19. Polymer Modeler

    28 Jun 2010 | Tools | Contributor(s): Benjamin P Haley, Nate Wilson, Chunyu Li, Andrea Arguelles, Eugenio Jaramillo, Alejandro Strachan

    Build thermoplastic polymer chains and run LAMMPS to relax the chains and study mechanical properties

    http://nanohub.org/resources/polymod

  20. Cyber-Infrastructure for Imaging and Simulation of Molecular and Cellular Mechanics (CISMCM)

    27 Oct 2009 | Tools | Contributor(s): Raheem Syed, Umberto Ravaioli, Gabriel Popescu, Nahil Sobh

    Simulation-Driven Science Project

    http://nanohub.org/resources/cismcm

nanoHUB.org, a resource for nanoscience and nanotechnology, is supported by the National Science Foundation and other funding agencies. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.