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Tags: nano/bio

Resources (1-20 of 423)

  1. nanoDDSCAT+

    13 Aug 2014 | Tools | Contributor(s): Nahil Sobh, AbderRahman N Sobh, Obaid Sarvana, John Feser, Prashant K Jain, Jacob Faucheaux, Jeremy Smith, Jeremy Smith, Sarah White

    Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

    http://nanohub.org/resources/ddaplus

  2. IMOD online

    09 Jun 2014 | Tools | Contributor(s): Mingxuan Lu, Chang Wan Han, Benjamin P Haley, Volkan Ortalan

    Online IMOD tool for electron tomography

    http://nanohub.org/resources/imod

  3. Nanoindentation

    28 Oct 2013 | Tools | Contributor(s): Slim Kibech, AbderRahman N Sobh, Pratik Naik, Nahil Sobh, Iwona Jasiuk

    Nanoindentation for Mechanical Characterization of Soft Materials

    http://nanohub.org/resources/nanoindentation

  4. nanoDDSCAT

    23 Apr 2013 | Tools | Contributor(s): Jeremy Smith, Jacob Faucheaux, Sarah White, AbderRahman N Sobh, John Feser, Prashant K Jain, Nahil Sobh

    Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

    http://nanohub.org/resources/dda

  5. cadnano to PDB File Converter

    13 Nov 2013 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

    http://nanohub.org/resources/cadnanocvrt

  6. Functionalization Workbench

    30 Aug 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jasper Taylor Maniates-Selvin, Kaustubh Bhalerao, Adri van Duin, Chen-Yu Li

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

    http://nanohub.org/resources/partsub

  7. Tensile Mechanics of alpha-Helical Polypeptides

    30 Aug 2013 | Tools | Contributor(s): Korosh Torabi, George C. Schatz

    This model is capable of making quantitatively accurate predictions of force-extension behavior of a given helix-forming polypeptide sequence including its dependence on pH, temperature and ionic...

    http://nanohub.org/resources/ahpull

  8. Molecular Dynamics Showcase

    06 Jul 2013 | Tools | Contributor(s): Michael McLennan

    View interesting features of a molecular dynamics trajectory file

    http://nanohub.org/resources/mdshowcase

  9. Neural Systems Modeling Ch10-13 Master Tool

    02 Aug 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node

    Combination of all tools used in Chapters 10-13 of Neural Systems Modeling by Anastasio

    http://nanohub.org/resources/nsmch10master

  10. [Illinois]: Neural Systems Modeling Ch 6-9 Master Tool

    26 Jul 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node

    Combination of all tools used in Chapters 6-9 of Neural Systems Modeling by Anastasio

    http://nanohub.org/resources/nsmch6master

  11. [Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights

    07 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.

    http://nanohub.org/resources/pertgradll

  12. [Illinois]: Perturbative Reinforcement Learning to Develop Distributed Representations

    10 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains three-layered networks of sigmoidal units to associate patterns.

    http://nanohub.org/resources/pertdistrep

  13. [Illinois]: Perturbative Reinforcement Learning Using Directed Drift

    10 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using a real-valued adaptation of the directed drift algorithm.

    http://nanohub.org/resources/pertdd

  14. [Illinois]: Temporal Difference, Iterative Dynamic Programming, and Least Mean Squares

    11 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson

    This tool updates state values using the Temporal Difference Algorithm.

    http://nanohub.org/resources/tempdiff

  15. Crystalline Cellulose - Atomistic Toolkit

    17 Jul 2013 | Tools | Contributor(s): Mateo Gómez Zuluaga, Robert J. Moon, Fernando Luis Dri, Pablo Daniel Zavattieri

    Crystalline Cellulose - Atomistic Toolkit

    http://nanohub.org/resources/ccamt

  16. [Illinois]: Direction Selectivity

    13 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool implements a simple direction selective network.

    http://nanohub.org/resources/dirselectivity

  17. [Illinois]: Predict Correct Set Up

    15 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool sets up a predictor-corrector model of target tracking

    http://nanohub.org/resources/predcorsetup

  18. [Illiniois]: SynchUp

    16 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool computes synchronous updates of autoassociative networks.

    http://nanohub.org/resources/synchup

  19. [Illinois]: AsynchUp

    16 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This tool computes asynchronous updates of autoassociative networks.

    http://nanohub.org/resources/asynchup

  20. [Illinois] KohonenSOM

    09 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, Jessica S Johnson, NanoBio Node

    This tool implements the Kohonen self-organizing map (SOM) algorithm

    http://nanohub.org/resources/kohonensom

nanoHUB.org, a resource for nanoscience and nanotechnology, is supported by the National Science Foundation and other funding agencies. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.