Tags: nano/bio

Tools (1-20 of 80)

  1. Glass transition temperature notebook

    23 May 2017 | Tools | Contributor(s): Benjamin P Haley, Lorena Alzate-Vargas

    Calculate the glass transition temperature of an atomistic, amorphous system by running MD simulations in a notebook

    http://nanohub.org/resources/tgnb

  2. DNA Origami Visualization Tools

    11 Jan 2017 | Tools | Contributor(s): Jessica Nash

    Visualize DNA origami designs

    http://nanohub.org/resources/cadnanovis

  3. Atomic Resolution Brownian Dynamics

    29 Nov 2016 | Tools | Contributor(s): Chris Maffeo

    GPU-accelerated Brownian dynamics simulation tool for biomolecular and nanotechnological systems

    http://nanohub.org/resources/arbd

  4. Coarse Graining of Crystalline Cellulose

    24 Oct 2016 | Tools | Contributor(s): Kuo Tian, Mehdi Shishehbor, Pablo Daniel Zavattieri

    Bio-inspired Crystalline Nano-Cellulose coarse graining toolkit

    http://nanohub.org/resources/cgmcc

  5. ENBIOS-2D Lab

    10 Oct 2016 | Tools | Contributor(s): Aldi Hoxha, Paolo Scarbolo, Andrea Cossettini, Federico Pittino, Luca Selmi

    A tool to simulate Ion Sensitive Field Effect Transistors in two dimensions

    http://nanohub.org/resources/biolabisfet

  6. ENBIOS-1D Lab

    29 Apr 2016 | Tools | Contributor(s): Paolo Scarbolo, Federico Pittino, Matteo , Andrea Cossettini, Luca Selmi

    A tool to simulate Electrolyte/Insulator/Semiconductor systems in one dimension

    http://nanohub.org/resources/biolab

  7. LegoGen

    07 Mar 2016 | Tools | Contributor(s): Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev

    Tool workflow for building DNA Brick structures automatically.

    http://nanohub.org/resources/legogen

  8. Molecular Dynamics Showcase Builder

    09 Nov 2015 | Tools | Contributor(s): Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li

    Tool to create showcases for the Molecular Dynamics Showcase viewer.

    http://nanohub.org/resources/mdshowbuilder

  9. A computational method for rapid prediction of amyloid beta-fibril structures

    27 Aug 2015 | Tools | Contributor(s): Hamed Tabatabaei Ghomi, Markus A. Lill

    A computational method for rapid prediction of amyloid beta-fibril structures

    http://nanohub.org/resources/fibpredictor

  10. Granular Crystals

    06 Aug 2015 | Tools | Contributor(s): Juan Camilo Lopez, Rohit Kaushal Tripathy, Ilias Bilionis, Marcial Gonzalez

    Allows the user to sample properties of granular chains under uncertainty propagation

    http://nanohub.org/resources/gransurrogate

  11. Gaussian processes 2D

    03 Aug 2015 | Tools | Contributor(s): Ilias Bilionis, Yinuo Li, Juan Camilo Lopez

    Gaussian Process 2D Sampling

    http://nanohub.org/resources/gp2d

  12. Gaussian processes 1D

    22 Jul 2015 | Tools | Contributor(s): Ilias Bilionis, Juan Camilo Lopez, Yinuo Li

    Allows the user to sample functions from a Gaussian process.

    http://nanohub.org/resources/gaussianpro

  13. Traction Force Microscopy

    29 Jan 2015 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

    This is a tool for particle motion tracking with respect to physical forces.

    http://nanohub.org/resources/parttrack

  14. Nanoindentation of Soft Elastic Materials

    09 Jan 2015 | Tools | Contributor(s): Taha Goudarzi

    Estimates Young's Modulus of a soft material from its force-displacement data of nanoindentaton test.

    http://nanohub.org/resources/hertzindent

  15. Nanoindentation of soft viscoelastic materials

    09 Jan 2015 | Tools | Contributor(s): Taha Goudarzi

    Finds viscoelastic parameters of Standard Linear Solid models from experimental data

    http://nanohub.org/resources/viscoindent

  16. nanoDDSCAT+

    24 Sep 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain

    Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

    http://nanohub.org/resources/ddaplus

  17. IMOD online

    29 Aug 2014 | Tools | Contributor(s): Mingxuan Lu, Chang Wan Han, Benjamin P Haley, Volkan Ortalan

    Online IMOD tool for electron tomography

    http://nanohub.org/resources/imod

  18. Nanoindentation

    07 Mar 2014 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk

    Nanoindentation for Mechanical Characterization of Soft Materials

    http://nanohub.org/resources/nanoindentation

  19. nanoDDSCAT

    22 Jan 2014 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

    Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

    http://nanohub.org/resources/dda

  20. cadnano to PDB File Converter

    13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

    http://nanohub.org/resources/cadnanocvrt