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Multi-species Biofilm on Wound Surface
01 May 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus
This is a class project that aims modeling two-species biofilm that grows on a wound
AMIGOS - Hypoxia
25 Apr 2019 | Contributor(s):: Furkan Kurtoglu, John Metzcar, Kali Nicole Konstantinopoulos, Timothy M Mahajan, Randy Heiland, Paul Macklin
Modeling Tumor in Hypoxic Condition
Replication Competent Oncolytic Virus expressing secretable trimeric TRAIL: hypothesis testing
23 Apr 2019 | Contributor(s):: Adrianne Jenner, Paul Macklin
Using PhysiCell to simulate a replication competent oncolytic virus expressing secretable trimeric TRAIL which induces apoptosis in nearby cells
Wound Healing - Physicell
22 Apr 2019 | Contributor(s):: Juliano Ferrari Gianlupi, Vedang Narain
Wound healing simulation using physicell
CompuCell3D - Bacterium Macrophage
17 Apr 2019 | | Contributor(s):: Juliano Ferrari Gianlupi, Somogyi, Andy T
Simulation of macrophage chasing bacterium
Polyvalent Nanoparticle Binding Simulator
16 Apr 2019 | | Contributor(s):: Nilsson, Lauren, JCS Kadupitiya, Vikram Jadhao
Simulates the binding of ligand-decorated nanoparticles to cell membrane driven by ligand-cell-receptor attraction
CompuCell3D Vascular Tumor
16 Apr 2019 | | Contributor(s):: Juliano Ferrari Gianlupi, Somogyi, Andy T
Simulate 3D vascular tumor with CompuCell3D
PhysiCell: biased random migration demonstrator
22 Feb 2019 | | Contributor(s):: Paul Macklin, Randy Heiland
PhysiCell demonstration of biased random cell migration
PhysiCell for tumor heterogeneity
12 Feb 2019 | | Contributor(s):: Randy Heiland, Paul Macklin
2D simulation of tumor heterogeneity
PhysiCell: invader-scout-attacker system
05 Feb 2019 | | Contributor(s):: Paul Macklin, Randy Heiland
PhysiCell model of an invader-scout-attacker multicellular system
PhysiCell cancer biorobots simulation
28 Jan 2019 | | Contributor(s):: Randy Heiland, Paul Macklin
2D simulation of biorobots delivering a drug to cancer cells
Nanoparticle Assembly Lab
28 Jan 2019 | | Contributor(s):: Nicholas Brunk, JCS Kadupitiya, Masaki Uchida, Douglas, Trevor, Vikram Jadhao
Simulate assembly of nanoparticles into aggregates in physiological conditions.
Nanosphere Electrostatics Lab
22 May 2018 | | Contributor(s):: JCS Kadupitiya, Nicholas Brunk, Sohile Ali, Fox, Geoffrey C., Vikram Jadhao
The Nanosphere Electrostatics Lab empowers users to simulate the self-assembly of ions near a spherically shaped nanoparticle, and extract the effective electrostatic properties.
pc4nanobio: cancer nanotherapy simulator
19 Apr 2018 | | Contributor(s):: Randy Heiland, Paul Macklin
Simulate cancer response to shape-changing nanoparticles conjugated to novel therapeutics
The Effective Fragment Potential Method Calculation Tool
out of 5 stars
07 Jun 2017 | | Contributor(s):: Lyudmila V. Slipchenko, Pradeep Kumar Gurunathan, Hanjing Xu
LIBEFP facilitates extension of unique electronic structure methodologies designed for accurate simulations in the gas phase to condensed phases via QM/EFP. This tool provides a easy-to-use GUI for input generation and output visualization.
Ions in Nanoconfinement
06 Dec 2017 | | Contributor(s):: Kadupitige Kadupitiya, Nasim Anousheh, Suresh Marru, Fox, Geoffrey C., Vikram Jadhao
The Ions in Nanoconfinement app empowers users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.
Atomistic Polymer Workflow Notebook
19 Oct 2017 | | Contributor(s):: Benjamin P Haley
Run PolymerModeler and nuSIMM tools to create atomistic polymer systems
Mechanics of Crystalline Nano Cellulose Nanofilm
06 Jul 2017 | | Contributor(s):: Joshua Leonardo, Mehdi Shishehbor, Pablo Daniel Zavattieri
Simulation of tensile tests on your own Crystalline Nano Cellulose structures.
Glass transition temperature notebook
22 May 2017 | | Contributor(s):: Benjamin P Haley, Lorena Alzate-Vargas
Calculate the glass transition temperature of an atomistic, amorphous system by running MD simulations in a notebook
DNA Origami Visualization Tools
12 Sep 2016 | | Contributor(s):: Jessica Nash
Visualize DNA origami designs