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Tags: nano/bio

Tools (1-20 of 72)

  1. A computational method for rapid prediction of amyloid beta-fibril structures

    23 Mar 2015 | Tools | Contributor(s): Hamed Tabatabaei Ghomi, Markus A. Lill

    A computational method for rapid prediction of amyloid beta-fibril structures

    http://nanohub.org/resources/fibpredictor

  2. Granular Crystals

    22 Jul 2015 | Tools | Contributor(s): Juan Camilo Lopez, Astitva Tripathi, Ilias Bilionis, Marcial Gonzalez

    Allows the user to sample properties of granular chains under uncertainty propagation

    http://nanohub.org/resources/gransurrogate

  3. Gaussian processes 2D

    26 Jun 2015 | Tools | Contributor(s): Ilias Bilionis, Yinuo Li, Juan Camilo Lopez

    Gaussian Process 2D Sampling

    http://nanohub.org/resources/gp2d

  4. Gaussian processes 1D

    10 Jun 2015 | Tools | Contributor(s): Ilias Bilionis, Juan Camilo Lopez, Yinuo Li

    Allows the user to sample functions from a Gaussian process.

    http://nanohub.org/resources/gaussianpro

  5. Traction Force Microscopy

    17 Apr 2014 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

    This is a tool for particle motion tracking with respect to physical forces.

    http://nanohub.org/resources/parttrack

  6. Nanoindentation of Soft Elastic Materials

    04 Jan 2015 | Tools | Contributor(s): Taha Goudarzi

    Using inverse methods to estimate the Young's Modulus of soft materials for a given nanoindentation force-displacement experimental data.

    http://nanohub.org/resources/hertzindent

  7. Nanoindentation of soft viscoelastic materials

    04 Jan 2015 | Tools | Contributor(s): Taha Goudarzi

    Finds viscoelastic parameters of Standard Linear Solid models from experimental data

    http://nanohub.org/resources/viscoindent

  8. nanoDDSCAT+

    13 Aug 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain

    Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

    http://nanohub.org/resources/ddaplus

  9. IMOD online

    09 Jun 2014 | Tools | Contributor(s): Mingxuan Lu, Chang Wan Han, Benjamin P Haley, Volkan Ortalan

    Online IMOD tool for electron tomography

    http://nanohub.org/resources/imod

  10. Nanoindentation

    28 Oct 2013 | Tools | Contributor(s): Slim Kibech, AbderRahman N Sobh, Pratik Naik, Nahil Sobh, Iwona Jasiuk

    Nanoindentation for Mechanical Characterization of Soft Materials

    http://nanohub.org/resources/nanoindentation

  11. nanoDDSCAT

    23 Apr 2013 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

    Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

    http://nanohub.org/resources/dda

  12. cadnano to PDB File Converter

    13 Nov 2013 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

    http://nanohub.org/resources/cadnanocvrt

  13. Functionalization Workbench

    30 Aug 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jasper Taylor Maniates-Selvin, Kaustubh Bhalerao, Adri van Duin, Chen-Yu Li

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

    http://nanohub.org/resources/partsub

  14. Tensile Mechanics of alpha-Helical Polypeptides

    30 Aug 2013 | Tools | Contributor(s): Korosh Torabi, George C. Schatz

    This model is capable of making quantitatively accurate predictions of force-extension behavior of a given helix-forming polypeptide sequence including its dependence on pH, temperature and ionic...

    http://nanohub.org/resources/ahpull

  15. Molecular Dynamics Showcase

    06 Jul 2013 | Tools | Contributor(s): Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev

    View interesting features of a molecular dynamics trajectory file

    http://nanohub.org/resources/mdshowcase

  16. Neural Systems Modeling Ch10-13 Master Tool

    02 Aug 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node

    Combination of all tools used in Chapters 10-13 of Neural Systems Modeling by Anastasio

    http://nanohub.org/resources/nsmch10master

  17. [Illinois]: Neural Systems Modeling Ch 6-9 Master Tool

    26 Jul 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node

    Combination of all tools used in Chapters 6-9 of Neural Systems Modeling by Anastasio

    http://nanohub.org/resources/nsmch6master

  18. [Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights

    07 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.

    http://nanohub.org/resources/pertgradll

  19. [Illinois]: Perturbative Reinforcement Learning to Develop Distributed Representations

    10 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains three-layered networks of sigmoidal units to associate patterns.

    http://nanohub.org/resources/pertdistrep

  20. [Illinois]: Perturbative Reinforcement Learning Using Directed Drift

    10 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using a real-valued adaptation of the directed drift algorithm.

    http://nanohub.org/resources/pertdd

nanoHUB.org, a resource for nanoscience and nanotechnology, is supported by the National Science Foundation and other funding agencies. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.