Tags: nano/bio

Tools (1-20 of 75)

  1. ENBIOS-1D Lab

    29 Apr 2016 | Tools | Contributor(s): Federico Pittino, Matteo , Paolo Scarbolo, Andrea Cossettini, Luca Selmi

    A tool to simulate Electrolyte/Insulator/Semiconductor systems in one dimension

    http://nanohub.org/resources/biolab

  2. LegoGen

    07 Mar 2016 | Tools | Contributor(s): Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev

    Tool workflow for building DNA Brick structures automatically.

    http://nanohub.org/resources/legogen

  3. Molecular Dynamics Showcase Builder

    09 Nov 2015 | Tools | Contributor(s): Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li

    Tool to create showcases for the Molecular Dynamics Showcase viewer.

    http://nanohub.org/resources/mdshowbuilder

  4. A computational method for rapid prediction of amyloid beta-fibril structures

    27 Aug 2015 | Tools | Contributor(s): Hamed Tabatabaei Ghomi, Markus A. Lill

    A computational method for rapid prediction of amyloid beta-fibril structures

    http://nanohub.org/resources/fibpredictor

  5. Granular Crystals

    06 Aug 2015 | Tools | Contributor(s): Juan Camilo Lopez, Rohit Kaushal Tripathy, Ilias Bilionis, Marcial Gonzalez

    Allows the user to sample properties of granular chains under uncertainty propagation

    http://nanohub.org/resources/gransurrogate

  6. Gaussian processes 2D

    03 Aug 2015 | Tools | Contributor(s): Ilias Bilionis, Yinuo Li, Juan Camilo Lopez

    Gaussian Process 2D Sampling

    http://nanohub.org/resources/gp2d

  7. Gaussian processes 1D

    22 Jul 2015 | Tools | Contributor(s): Ilias Bilionis, Juan Camilo Lopez, Yinuo Li

    Allows the user to sample functions from a Gaussian process.

    http://nanohub.org/resources/gaussianpro

  8. Traction Force Microscopy

    29 Jan 2015 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

    This is a tool for particle motion tracking with respect to physical forces.

    http://nanohub.org/resources/parttrack

  9. Nanoindentation of Soft Elastic Materials

    09 Jan 2015 | Tools | Contributor(s): Taha Goudarzi

    Estimates Young's Modulus of a soft material from its force-displacement data of nanoindentaton test.

    http://nanohub.org/resources/hertzindent

  10. Nanoindentation of soft viscoelastic materials

    09 Jan 2015 | Tools | Contributor(s): Taha Goudarzi

    Finds viscoelastic parameters of Standard Linear Solid models from experimental data

    http://nanohub.org/resources/viscoindent

  11. nanoDDSCAT+

    24 Sep 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain

    Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

    http://nanohub.org/resources/ddaplus

  12. IMOD online

    29 Aug 2014 | Tools | Contributor(s): Mingxuan Lu, Chang Wan Han, Benjamin P Haley, Volkan Ortalan

    Online IMOD tool for electron tomography

    http://nanohub.org/resources/imod

  13. Nanoindentation

    07 Mar 2014 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk

    Nanoindentation for Mechanical Characterization of Soft Materials

    http://nanohub.org/resources/nanoindentation

  14. nanoDDSCAT

    22 Jan 2014 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

    Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

    http://nanohub.org/resources/dda

  15. cadnano to PDB File Converter

    13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

    http://nanohub.org/resources/cadnanocvrt

  16. Functionalization Workbench

    13 Jan 2014 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

    http://nanohub.org/resources/partsub

  17. Tensile Mechanics of alpha-Helical Polypeptides

    23 Oct 2013 | Tools | Contributor(s): Korosh Torabi, George C. Schatz

    This model is capable of making quantitatively accurate predictions of force-extension behavior of a given helix-forming polypeptide sequence including its dependence on pH, temperature and ionic...

    http://nanohub.org/resources/ahpull

  18. Molecular Dynamics Showcase

    14 Oct 2013 | Tools | Contributor(s): Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev, George A. Howlett

    View interesting features of a molecular dynamics trajectory file

    http://nanohub.org/resources/mdshowcase

  19. Neural Systems Modeling Ch10-13 Master Tool

    19 Aug 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node

    Combination of all tools used in Chapters 10-13 of Neural Systems Modeling by Anastasio

    http://nanohub.org/resources/nsmch10master

  20. [Illinois]: Neural Systems Modeling Ch 6-9 Master Tool

    19 Aug 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node

    Combination of all tools used in Chapters 6-9 of Neural Systems Modeling by Anastasio

    http://nanohub.org/resources/nsmch6master