Find information on common issues.
Ask questions and find answers from other users.
Suggest a new site feature or improvement.
Check on status of your tickets.
0.0 out of 5 stars
14 Dec 2015 | Tools | Contributor(s): Federico Pittino, Matteo , scarbolo paolo, Andrea Cossettini, Luca Selmi
A tool to simulate Electrolyte/Insulator/Semiconductor systems in one dimension
05 Feb 2016 | Tools | Contributor(s): Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev
Tool workflow for building DNA Brick structures automatically.
Molecular Dynamics Showcase Builder
09 Nov 2015 | Tools | Contributor(s): Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li
Tool to create showcases for the Molecular Dynamics Showcase viewer.
A computational method for rapid prediction of amyloid beta-fibril structures
23 Mar 2015 | Tools | Contributor(s): Hamed Tabatabaei Ghomi, Markus A. Lill
22 Jul 2015 | Tools | Contributor(s): Juan Camilo Lopez, Rohit Kaushal Tripathy, Ilias Bilionis, Marcial Gonzalez
Allows the user to sample properties of granular chains under uncertainty propagation
Gaussian processes 2D
26 Jun 2015 | Tools | Contributor(s): Ilias Bilionis, Yinuo Li, Juan Camilo Lopez
Gaussian Process 2D Sampling
Gaussian processes 1D
10 Jun 2015 | Tools | Contributor(s): Ilias Bilionis, Juan Camilo Lopez, Yinuo Li
Allows the user to sample functions from a Gaussian process.
Traction Force Microscopy
17 Apr 2014 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi
This is a tool for particle motion tracking with respect to physical forces.
Nanoindentation of Soft Elastic Materials
04 Jan 2015 | Tools | Contributor(s): Taha Goudarzi
Using inverse methods to estimate the Young's Modulus of soft materials for a given nanoindentation force-displacement experimental data.
Nanoindentation of soft viscoelastic materials
Finds viscoelastic parameters of Standard Linear Solid models from experimental data
5.0 out of 5 stars
13 Aug 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain
Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.
09 Jun 2014 | Tools | Contributor(s): Mingxuan Lu, Chang Wan Han, Benjamin P Haley, Volkan Ortalan
Online IMOD tool for electron tomography
28 Oct 2013 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk
Nanoindentation for Mechanical Characterization of Soft Materials
23 Apr 2013 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser
Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.
cadnano to PDB File Converter
3.0 out of 5 stars
13 Nov 2013 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev
Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.
30 Aug 2013 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li
Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.
Tensile Mechanics of alpha-Helical Polypeptides
30 Aug 2013 | Tools | Contributor(s): Korosh Torabi, George C. Schatz
This model is capable of making quantitatively accurate predictions of force-extension behavior of a given helix-forming polypeptide sequence including its dependence on pH, temperature and ionic...
Molecular Dynamics Showcase
06 Jul 2013 | Tools | Contributor(s): Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev
View interesting features of a molecular dynamics trajectory file
Neural Systems Modeling Ch10-13 Master Tool
02 Aug 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node
Combination of all tools used in Chapters 10-13 of Neural Systems Modeling by Anastasio
[Illinois]: Neural Systems Modeling Ch 6-9 Master Tool
26 Jul 2013 | Tools | Contributor(s): Jessica S Johnson, NanoBio Node
Combination of all tools used in Chapters 6-9 of Neural Systems Modeling by Anastasio