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Bimodal Polymer Nano Brush
Ranking is calculated from a formula comprised of user reviews and usage data. Learn more ›
12 Jul 2011 | Tools | Contributor(s): Rikkert Jan Nap, Fritzlaine Roche, Marcelo Carignano
Structure and Thermodynamics of Bimodal Polymer Nano Brushes
Bio Composite Simulator
13 Oct 2011 | Tools | Contributor(s): Sebastian Lee, Pablo Daniel Zavattieri, Alejandro Strachan
Simulation mechanical response of bio composites using rigid particles
30 May 2006 | Tools | Contributor(s): Reza Toghraee, Umberto Ravaioli
Transport Monte Carlo simulation of conduction in biological Ionic Channels.
04 Feb 2008 | Tools | Contributor(s): David Papke, Reza Toghraee, Umberto Ravaioli, Ankit Raj
Simulates ion flow through a channel.
14 Aug 2006 | Tools | Contributor(s): Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam
BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.
Cyber-Infrastructure for Imaging and Simulation of Molecular and Cellular Mechanics (CISMCM)
27 Oct 2009 | Tools | Contributor(s): Raheem Syed, Umberto Ravaioli, Gabriel Popescu, Nahil Sobh
Simulation-Driven Science Project
Exciton Dynamics Lab for Light-Harvesting Complexes (GPU-HEOM)
18 Dec 2012 | Tools | Contributor(s): Christoph Kreisbeck, Tobias Kramer
Non-Markovian calculation of absorption spectra, 2d echo-spectra, coherences and polulation dynamics for light-harvesting complexes.
Forced Protein Unfolding
01 Jun 2009 | Tools | Contributor(s): Ashlie Martini, Benjamin Rafferty, Zachary Carl Flohr
Molecular dynamics simulation of forced protein unfolding
24 Jul 2006 | Tools | Contributor(s): Eric F Darve, Artit Wangperawong, Kazutora Hayashida
Study hydrophobicity and how Lennard Jones particles cluster in a polar solvent
Illinois Tool: FIONA (Fluorescence Imaging with One Nanometer Accuracy)
01 Nov 2010 | Tools | Contributor(s): Paul R Selvin, Raheem Syed, Nahil Sobh
Fluorescence Imaging with One Nanometer Accuracy
Illinois Tools: NanoGromacsDemo
30 Oct 2006 | Tools | Contributor(s): Dairui Chen, Derrick Kearney, Jay Mashl, Nahil Sobh, Eric Jakobsson
Implementation of the popular molecular dynamics software suite GROMACS
03 Apr 2009 | Tools | Contributor(s): Raheem Syed, Nahil Sobh, Umberto Ravaioli, Gabriel Popescu, Mohamed Mohamed
It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. It can read many image formats.
Intercellular synthetic biology
03 May 2013 | Tools | Contributor(s): Ting Lu, Nahil Sobh, John Feser, Pratik Naik
Synthetic biology tool for engineering patterning systems.
17 Feb 2012 | Tools | Contributor(s): Zuhaib Bashir Sheikh, Nahil Sobh
Simulates passage of light through biological tissue having an embedded metallic nanoparticles using FDTD
Nanoindentation close to an interface
06 May 2011 | Tools | Contributor(s): Alvian Siswoyo, Marisol Koslowski
Simulated the indentation force curve close to a perfectly bonded interface
Nisin Diffusion Tool
08 Apr 2013 | Tools | Contributor(s): Andrew Blanchard
Simulate cell fluorescence based on nisin concentration
PNP Cyclic Peptide Ion Channel Model
04 Apr 2007 | Tools | Contributor(s): Brian Radak, Hyonseok Hwang, George C. Schatz, Mark A. Ratner
This tool simulates ion flow in a system modeled after cyclic peptide ion channels using Poisson-Nernst-Planck (PNP) theory.
28 Jun 2010 | Tools | Contributor(s): Benjamin P Haley, Nate Wilson, Chunyu Li, Andrea Arguelles, Eugenio Jaramillo, Alejandro Strachan
Build thermoplastic polymer chains and run LAMMPS to relax the chains and study mechanical properties
Protein Contact Maps
22 Oct 2010 | Tools | Contributor(s): Benjamin Rafferty, Zachary Carl Flohr, Ashlie Martini
Create and view protein contact maps and distance maps.
Stretching simulation of an alpha-helical protein domain
10 Jan 2011 | Tools | Contributor(s): Markus Buehler, Justin Riley, Joo-Hyoung Lee, Jeffrey C Grossman
Uses steered molecular dynamics (SMD) to apply a tensile load to the ends of a molecule (such as an alpha-helical protein domain)
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