Tags: nano/bio

Tools (1-20 of 75)

  1. A computational method for rapid prediction of amyloid beta-fibril structures

    27 Aug 2015 | Tools | Contributor(s): Hamed Tabatabaei Ghomi, Markus A. Lill

    A computational method for rapid prediction of amyloid beta-fibril structures

    http://nanohub.org/resources/fibpredictor

  2. Bimodal Polymer Nano Brush

    08 Aug 2011 | Tools | Contributor(s): Rikkert Jan Nap, Fritzlaine Roche, Marcelo Carignano

    Structure and Thermodynamics of Bimodal Polymer Nano Brushes

    http://nanohub.org/resources/binbrush

  3. Bio Composite Simulator

    26 Oct 2011 | Tools | Contributor(s): Sebastian Lee, Pablo Daniel Zavattieri, Alejandro Strachan

    Simulation mechanical response of bio composites using rigid particles

    http://nanohub.org/resources/nacresimulator

  4. biomoca

    14 Mar 2008 | Tools | Contributor(s): Reza Toghraee, Umberto Ravaioli

    Ion channel simulator

    http://nanohub.org/resources/biomoca

  5. BioMOCA Suite

    14 Feb 2008 | Tools | Contributor(s): David Papke, Reza Toghraee, Umberto Ravaioli, Ankit Raj

    Simulates ion flow through a channel.

    http://nanohub.org/resources/BMCsuite

  6. BioSensorLab

    28 Mar 2008 | Tools | Contributor(s): Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain

    BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.

    http://nanohub.org/resources/senstran

  7. cadnano to PDB File Converter

    13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

    http://nanohub.org/resources/cadnanocvrt

  8. Crystalline Cellulose - Atomistic Toolkit

    05 Aug 2013 | Tools | Contributor(s): Mateo Gómez Zuluaga, Robert J. Moon, Fernando Luis Dri, Pablo Daniel Zavattieri

    Crystalline Cellulose - Atomistic Toolkit

    http://nanohub.org/resources/ccamt

  9. Cyber-Infrastructure for Imaging and Simulation of Molecular and Cellular Mechanics (CISMCM)

    21 Dec 2009 | Tools | Contributor(s): Raheem Syed, Umberto Ravaioli, Gabriel Popescu, Nahil Sobh

    Simulation-Driven Science Project

    http://nanohub.org/resources/cismcm

  10. ENBIOS-1D Lab

    29 Apr 2016 | Tools | Contributor(s): Federico Pittino, Paolo Scarbolo, Matteo , Andrea Cossettini, Luca Selmi

    A tool to simulate Electrolyte/Insulator/Semiconductor systems in one dimension

    http://nanohub.org/resources/biolab

  11. Exciton Dynamics Lab for Light-Harvesting Complexes (GPU-HEOM)

    28 Feb 2013 | Tools | Contributor(s): Christoph Kreisbeck, Tobias Kramer

    Non-Markovian calculation of absorption spectra, 2d echo-spectra, coherences and polulation dynamics for light-harvesting complexes.

    http://nanohub.org/resources/gpuheompop

  12. Finite Buffer dCME (fb-dCME)

    20 Jun 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Jie Liang, Nahil Sobh

    Finite Buffer Method for Direct Solution of Discrete Chemical Master Equation (fb-dCME)

    http://nanohub.org/resources/fbsdcme

  13. Forced Protein Unfolding

    08 Jul 2009 | Tools | Contributor(s): Ashlie Martini, Benjamin Rafferty, Zachary Carl Flohr

    Molecular dynamics simulation of forced protein unfolding

    http://nanohub.org/resources/fpuf

  14. Functionalization Workbench

    13 Jan 2014 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

    http://nanohub.org/resources/partsub

  15. Gaussian processes 1D

    22 Jul 2015 | Tools | Contributor(s): Ilias Bilionis, Juan Camilo Lopez, Yinuo Li

    Allows the user to sample functions from a Gaussian process.

    http://nanohub.org/resources/gaussianpro

  16. Gaussian processes 2D

    03 Aug 2015 | Tools | Contributor(s): Ilias Bilionis, Yinuo Li, Juan Camilo Lopez

    Gaussian Process 2D Sampling

    http://nanohub.org/resources/gp2d

  17. Granular Crystals

    06 Aug 2015 | Tools | Contributor(s): Juan Camilo Lopez, Rohit Kaushal Tripathy, Ilias Bilionis, Marcial Gonzalez

    Allows the user to sample properties of granular chains under uncertainty propagation

    http://nanohub.org/resources/gransurrogate

  18. Hydrodynamic Particle Trapping

    26 Jun 2013 | Tools | Contributor(s): Melikhan tanyerim@illinois.edu Tanyeri, John Feser, Nahil Sobh

    Simulates the motion of a nanoparticle in a hydrodynamic trap.

    http://nanohub.org/resources/particletrap

  19. Hydrophobicity Lab

    29 Jan 2007 | Tools | Contributor(s): Eric F Darve, Artit Wangperawong, Kazutora Hayashida

    Study hydrophobicity and how Lennard Jones particles cluster in a polar solvent

    http://nanohub.org/resources/hydrolab

  20. Illinois Tool: FIONA (Fluorescence Imaging with One Nanometer Accuracy)

    13 Dec 2010 | Tools | Contributor(s): Paul R Selvin, Raheem Syed, Nahil Sobh

    Fluorescence Imaging with One Nanometer Accuracy

    http://nanohub.org/resources/fiona