Tags: NanoBio Node

Tools (1-20 of 28)

  1. Accurate Chemical Master Equation (ACME)

    20 Jun 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang

    Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in...

    http://nanohub.org/resources/fbsdcme

  2. BioSensorLab

    28 Mar 2008 | Tools | Contributor(s): Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain

    BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.

    http://nanohub.org/resources/senstran

  3. cadnano to PDB File Converter

    13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

    http://nanohub.org/resources/cadnanocvrt

  4. DBR Laser Simulator

    08 Sep 2012 | Tools | Contributor(s): Nikhil Sancheti, Lynford Goddard, Christopher Adam Edwards

    Describes properties of a GaAs/AlGaAs DBR laser

    http://nanohub.org/resources/dbrlaser

  5. Hydrodynamic Particle Trapping

    26 Jun 2013 | Tools | Contributor(s): Melikhan tanyerim@illinois.edu Tanyeri, John Feser, Nahil Sobh

    Simulates the motion of a nanoparticle in a hydrodynamic trap.

    http://nanohub.org/resources/particletrap

  6. LegoGen

    07 Mar 2016 | Tools | Contributor(s): Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev

    Tool workflow for building DNA Brick structures automatically.

    http://nanohub.org/resources/legogen

  7. Molecular Dynamics Showcase

    14 Oct 2013 | Tools | Contributor(s): Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev, George A. Howlett

    View interesting features of a molecular dynamics trajectory file

    http://nanohub.org/resources/mdshowcase

  8. Molecular Dynamics Showcase Builder

    09 Nov 2015 | Tools | Contributor(s): Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li

    Tool to create showcases for the Molecular Dynamics Showcase viewer.

    http://nanohub.org/resources/mdshowbuilder

  9. nanoDDSCAT

    22 Jan 2014 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

    Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

    http://nanohub.org/resources/dda

  10. nanoDDSCAT+

    24 Sep 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain

    Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

    http://nanohub.org/resources/ddaplus

  11. Nanoindentation

    07 Mar 2014 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk

    Nanoindentation for Mechanical Characterization of Soft Materials

    http://nanohub.org/resources/nanoindentation

  12. Nisin Diffusion Tool

    24 Apr 2013 | Tools | Contributor(s): Andrew Blanchard, Ting Lu

    Simulate cell fluorescence based on nisin concentration

    http://nanohub.org/resources/nisindiffusion

  13. Pattern Formation in Bacterial Populations

    22 May 2013 | Tools | Contributor(s): Ting Lu, John Feser, Nahil Sobh, Pratik Naik

    Synthetic biology tool for engineering patterning systems.

    http://nanohub.org/resources/patform

  14. Traction Force Microscopy

    29 Jan 2015 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

    This is a tool for particle motion tracking with respect to physical forces.

    http://nanohub.org/resources/parttrack

  15. [Illiniois]: SynchUp

    26 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool computes synchronous updates of autoassociative networks.

    http://nanohub.org/resources/synchup

  16. [Illinois] KohonenSOM

    25 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, Jessica S Johnson, NanoBio Node

    This tool implements the Kohonen self-organizing map (SOM) algorithm

    http://nanohub.org/resources/kohonensom

  17. [Illinois]: AsynchUp

    26 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This tool computes asynchronous updates of autoassociative networks.

    http://nanohub.org/resources/asynchup

  18. [Illinois]: Avoidance Learn Simulation

    01 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance conditioning as reinforcement learning with two upper motoneurons (SUMO and FUMO).

    http://nanohub.org/resources/avoidlearn

  19. [Illinois]: Avoidance Learn Simulation with 'Call' Neuron

    01 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance learning as a reinforcement learning with two upper motoneurons (sumo and fumo) and one "call" neuron.

    http://nanohub.org/resources/avoidlearncall

  20. [Illinois]: BUTDjointDistribution

    24 Jul 2013 | Tools | Contributor(s): Bara Saadah, Jessica S Johnson, NanoBio Node

    this tool simulates bottom-up/top-down processing in the visual system using the joint distribution

    http://nanohub.org/resources/butdjdist