Tags: NanoBio Node

Tools (1-20 of 28)

  1. BioSensorLab

    28 Mar 2008 | Tools | Contributor(s): Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain

    BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.

    http://nanohub.org/resources/senstran

  2. cadnano to PDB File Converter

    13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

    http://nanohub.org/resources/cadnanocvrt

  3. DBR Laser Simulator

    08 Sep 2012 | Tools | Contributor(s): Nikhil Sancheti, Lynford Goddard, Christopher Adam Edwards

    Describes properties of a GaAs/AlGaAs DBR laser

    http://nanohub.org/resources/dbrlaser

  4. Finite Buffer dCME (fb-dCME)

    20 Jun 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Jie Liang, Nahil Sobh

    Finite Buffer Method for Direct Solution of Discrete Chemical Master Equation (fb-dCME)

    http://nanohub.org/resources/fbsdcme

  5. Hydrodynamic Particle Trapping

    26 Jun 2013 | Tools | Contributor(s): Melikhan tanyerim@illinois.edu Tanyeri, John Feser, Nahil Sobh

    Simulates the motion of a nanoparticle in a hydrodynamic trap.

    http://nanohub.org/resources/particletrap

  6. LegoGen

    07 Mar 2016 | Tools | Contributor(s): Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev

    Tool workflow for building DNA Brick structures automatically.

    http://nanohub.org/resources/legogen

  7. Molecular Dynamics Showcase

    14 Oct 2013 | Tools | Contributor(s): Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev, George A. Howlett

    View interesting features of a molecular dynamics trajectory file

    http://nanohub.org/resources/mdshowcase

  8. Molecular Dynamics Showcase Builder

    09 Nov 2015 | Tools | Contributor(s): Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li

    Tool to create showcases for the Molecular Dynamics Showcase viewer.

    http://nanohub.org/resources/mdshowbuilder

  9. nanoDDSCAT

    22 Jan 2014 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

    Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

    http://nanohub.org/resources/dda

  10. nanoDDSCAT+

    24 Sep 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain

    Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

    http://nanohub.org/resources/ddaplus

  11. Nanoindentation

    07 Mar 2014 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk

    Nanoindentation for Mechanical Characterization of Soft Materials

    http://nanohub.org/resources/nanoindentation

  12. Nisin Diffusion Tool

    24 Apr 2013 | Tools | Contributor(s): Andrew Blanchard, Ting Lu

    Simulate cell fluorescence based on nisin concentration

    http://nanohub.org/resources/nisindiffusion

  13. Pattern Formation in Bacterial Populations

    22 May 2013 | Tools | Contributor(s): Ting Lu, John Feser, Nahil Sobh, Pratik Naik

    Synthetic biology tool for engineering patterning systems.

    http://nanohub.org/resources/patform

  14. Traction Force Microscopy

    29 Jan 2015 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

    This is a tool for particle motion tracking with respect to physical forces.

    http://nanohub.org/resources/parttrack

  15. [Illiniois]: SynchUp

    26 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool computes synchronous updates of autoassociative networks.

    http://nanohub.org/resources/synchup

  16. [Illinois] KohonenSOM

    25 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, Jessica S Johnson, NanoBio Node

    This tool implements the Kohonen self-organizing map (SOM) algorithm

    http://nanohub.org/resources/kohonensom

  17. [Illinois]: AsynchUp

    26 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This tool computes asynchronous updates of autoassociative networks.

    http://nanohub.org/resources/asynchup

  18. [Illinois]: Avoidance Learn Simulation

    01 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance conditioning as reinforcement learning with two upper motoneurons (SUMO and FUMO).

    http://nanohub.org/resources/avoidlearn

  19. [Illinois]: Avoidance Learn Simulation with 'Call' Neuron

    01 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance learning as a reinforcement learning with two upper motoneurons (sumo and fumo) and one "call" neuron.

    http://nanohub.org/resources/avoidlearncall

  20. [Illinois]: BUTDjointDistribution

    24 Jul 2013 | Tools | Contributor(s): Bara Saadah, Jessica S Johnson, NanoBio Node

    this tool simulates bottom-up/top-down processing in the visual system using the joint distribution

    http://nanohub.org/resources/butdjdist