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Tags: NanoBio Node

Tools (1-20 of 25)

  1. BioSensorLab

    14 Aug 2006 | Tools | Contributor(s): Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain

    BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.

    http://nanohub.org/resources/senstran

  2. cadnano to PDB File Converter

    13 Nov 2013 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

    http://nanohub.org/resources/cadnanocvrt

  3. DBR Laser Simulator

    07 Sep 2012 | Tools | Contributor(s): Nikhil Sancheti, Lynford Goddard, Christopher Adam Edwards

    Describes properties of a GaAs/AlGaAs DBR laser

    http://nanohub.org/resources/dbrlaser

  4. Finite Buffer dCME (fb-dCME)

    20 May 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Jie Liang, Nahil Sobh

    Finite Buffer Method for Direct Solution of Discrete Chemical Master Equation (fb-dCME)

    http://nanohub.org/resources/fbsdcme

  5. Hydrodynamic Particle Trapping

    14 Jun 2013 | Tools | Contributor(s): Melikhan tanyerim@illinois.edu Tanyeri, John Feser, Nahil Sobh

    Simulates the motion of a nanoparticle in a hydrodynamic trap.

    http://nanohub.org/resources/particletrap

  6. nanoDDSCAT

    23 Apr 2013 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

    Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

    http://nanohub.org/resources/dda

  7. nanoDDSCAT+

    13 Aug 2014 | Tools | Contributor(s): AbderRahman N Sobh

    Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

    http://nanohub.org/resources/ddaplus

  8. Nanoindentation

    28 Oct 2013 | Tools | Contributor(s): Slim Kibech, AbderRahman N Sobh, Pratik Naik, Nahil Sobh, Iwona Jasiuk

    Nanoindentation for Mechanical Characterization of Soft Materials

    http://nanohub.org/resources/nanoindentation

  9. Nisin Diffusion Tool

    08 Apr 2013 | Tools | Contributor(s): Andrew Blanchard, Ting Lu

    Simulate cell fluorescence based on nisin concentration

    http://nanohub.org/resources/nisindiffusion

  10. Pattern Formation in Bacterial Populations

    03 May 2013 | Tools | Contributor(s): Ting Lu, John Feser, Nahil Sobh, Pratik Naik

    Synthetic biology tool for engineering patterning systems.

    http://nanohub.org/resources/patform

  11. Traction Force Microscopy

    17 Apr 2014 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

    This is a tool for particle motion tracking with respect to physical forces.

    http://nanohub.org/resources/parttrack

  12. [Illiniois]: SynchUp

    16 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool computes synchronous updates of autoassociative networks.

    http://nanohub.org/resources/synchup

  13. [Illinois] KohonenSOM

    09 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, Jessica S Johnson, NanoBio Node

    This tool implements the Kohonen self-organizing map (SOM) algorithm

    http://nanohub.org/resources/kohonensom

  14. [Illinois]: AsynchUp

    16 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This tool computes asynchronous updates of autoassociative networks.

    http://nanohub.org/resources/asynchup

  15. [Illinois]: Avoidance Learn Simulation

    20 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance conditioning as reinforcement learning with two upper motoneurons (SUMO and FUMO).

    http://nanohub.org/resources/avoidlearn

  16. [Illinois]: Avoidance Learn Simulation with 'Call' Neuron

    25 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance learning as a reinforcement learning with two upper motoneurons (sumo and fumo) and one "call" neuron.

    http://nanohub.org/resources/avoidlearncall

  17. [Illinois]: BUTDjointDistribution

    16 Jul 2013 | Tools | Contributor(s): Bara Saadah, Jessica S Johnson, NanoBio Node

    this tool simulates bottom-up/top-down processing in the visual system using the joint distribution

    http://nanohub.org/resources/butdjdist

  18. [Illinois]: BUTDprobInference

    17 Jul 2013 | Tools | Contributor(s): Bara Saadah, Jessica S Johnson, NanoBio Node

    This tool stimulates bottom-up/top-down processing in the visual system using probabilistic inference.

    http://nanohub.org/resources/butdprobinf

  19. [Illinois]: Direction Selectivity

    13 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool implements a simple direction selective network.

    http://nanohub.org/resources/dirselectivity

  20. [Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights

    07 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.

    http://nanohub.org/resources/pertgradll

nanoHUB.org, a resource for nanoscience and nanotechnology, is supported by the National Science Foundation and other funding agencies. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.