Tags: Scalable Molecular Dynamics (NAMD)

Description

NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. Simulation preparation and analysis is integrated into the visualization package VMD.

All Categories (1-10 of 10)

  1. LegoGen

    05 Feb 2016 | | Contributor(s):: Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev

    Tool workflow for building DNA Brick structures automatically.

  2. Functionalization Workbench

    30 Aug 2013 | | Contributor(s):: AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

  3. [Illinois] Interdisciplinary Symposium on Advanced Nano/Biosystems (Design, Fabrication, and Characterization)

    27 Sep 2013 |

    The Interdisciplinary Symposium on Advanced Nano/Biosystems: Design, Fabrication, and Characterization aims to provide a stimulating discussing forum for recent advances in material design, fabrication and characterization techniques, including experiments, theories, computations, and modeling....

  4. [Illinois] Physics 550 Biomolecular Physics

    03 Sep 2013 | | Contributor(s):: Klaus Schulten, Taekjip Ha

        Physical concepts governing the structure and function of biological macromolecules; general properties, spatial structure, energy levels, dynamics and functions, and relation to other complex physical systems such as glasses; recent research in biomolecular physics; physical...

  5. [Illinois] Molecular and Multiscale Simulation Summer School

    08 May 2013 | | Contributor(s):: NanoBio Node

    This Summer School will train students in molecular simulation and simulation at multiple time and length scales. Instruction will be provided on quantum Monte Carlo simulation, molecular dynamics, coarse-grained simulations, and multiscale simulations with opportunities for hands-on experience...

  6. [Illinois] Coarse-grained Simulation of Ion Channels

    29 Dec 2012 | | Contributor(s):: Umberto Ravaioli

    This Summer School will train students in molecular simulation and simulation at multiple time and length scales. Instruction will be provided on quantum Monte Carlo simulation, molecular dynamics, coarse-grained simulations, and multiscale simulations with opportunities for hands-on experience...

  7. [Illinois] Molecular Dynamics Software (NAMD)

    19 Jun 2012 | | Contributor(s):: Emad Tajkhorshid

  8. [Illinois] Coarse-grained / Multiscale Simulation Software (NAMD)

    19 Jun 2012 | | Contributor(s):: Emad Tajkhorshid

  9. Illinois Phys550 Molecular Biophysics Lecture 2: Compartmentalization of Cells, Photosynthesis I

    26 Jan 2010 | | Contributor(s):: Klaus Schulten

    Compartmentalization of cells, photosynthesis (part 1 of 2)

  10. Illinois Phys550 Molecular Biophysics

    25 Jan 2010 | | Contributor(s):: Klaus Schulten

    Physical concepts governing the structure and function of biological macromolecules; general properties, spatial structure, energy levels, dynamics and functions, and relation to other complex physical systems such as glasses; recent research in biomolecular physics; physical techniques and...