Tags: simulation and modeling

Tools (1-7 of 7)

  1. cadnano to PDB File Converter

    13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.



    29 Feb 2008 | Tools | Contributor(s): Baudilio Tejerina, Jeff Reimers

    Semi-empirical Molecular Orbital calculations.


  3. Comb Drive Levitation

    06 Apr 2010 | Tools | Contributor(s): Fengyuan (Thomas) Li, jason clark

    Model comb drive levitation effect with Schwarz-Christoffel based algorithm


  4. Functionalization Workbench

    13 Jan 2014 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.


  5. LegoGen

    07 Mar 2016 | Tools | Contributor(s): Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev

    Tool workflow for building DNA Brick structures automatically.


  6. Nano-Plasmonic Bowtie Antenna Simulator

    15 Dec 2008 | Tools | Contributor(s): Alexander S McLeod, Jeffrey B. Neaton, P. James Schuck, Eugene Song, Graham Chapman

    A tool for simulating the near-field enhancement effects of nano-scale bowtie antennae.


  7. Thermoelectric Power Factor Calculator for Nanocrystalline Composites

    21 Oct 2008 | Tools | Contributor(s): Terence Musho, Greg Walker

    Quantum Simulation of the Seebeck Coefficient and Electrical Conductivity in a 2D Nanocrystalline Composite Structure using Non-Equilibrium Green's Functions