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2010 Nano-Biophotonics Summer School @ UIUC Lecture 32 - Understanding fundamental electromagnetic wave phenomena with finite-difference time-domain (FDTD) simulations
28 Jan 2011 | | Contributor(s):: Lingxiao Zhang
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 33 - Molecular mechanism of ionic selectivity in potassium channels
28 Jan 2011 | | Contributor(s):: Crina Nimigean
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 34 - Molecular engineering and live cell imaging
27 Jan 2011 | | Contributor(s):: Yingxiao Wang
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 35 - 3D Optical Superresolution: 4Pi Microscopy and Photoactivation Localization Microscopy (FPALM)
28 Jan 2011 | | Contributor(s):: Joerg Bewersdorf
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 36 - Nanoscale fluctuations in live cells
27 Jan 2011 | | Contributor(s):: Gabriel Popescu
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 4 - Gaussian beam propagation - Elastic light scattering - Dynamic light scattering
25 Sep 2010 | | Contributor(s):: Gabriel Popescu
Often, experiments involve light beams. A light beam can be defined as a distribution of field that fulfills the approximation in Eq. 20,i.e. is characterized by a dominant wave vector component, k(z) >> k(x) , k(y) . A beam is, therefore, the spatial equivalent of quasimonochromaticlight,...
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 5 - Biomedicine - A tour of the Cell
25 Sep 2010 | | Contributor(s):: Marina Marjanovic
Edited and Uploaded by Omar Sobh, University of Illinois at Urbana-Champaign
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 6 - Biomedicine - Intro to cellular bioengineering
25 Oct 2010 | | Contributor(s):: Yingxiao Wang
Edited and Uploaded by Omar Sobh
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 7 - Pathology of blood and tissue biopsies - NanoBiophotonics
26 Oct 2010 | | Contributor(s):: Krishna Tangella
Edited and Uploaded by Omar Sobh, University of Illinois at Urbana-Champaign
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 8 - The Visual System: Components, Connections and Clinical Presentations
25 Oct 2010 | | Contributor(s):: Catherine Best-Popescu
Edited and Uploaded by Omar Sobh, University of Illinois at Urbana-Champaign
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 9 - Vision restoration: surgical procedures to cure blindness
26 Oct 2010 | | Contributor(s):: Samir Sayegh
Edited and Uploaded by Omar Sobh, University of Illinois at Urbana-Champaign
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2010 Nano-Biophotonics Summer School at the University of Illinois at Urbana-Champaign
20 Sep 2010 | | Contributor(s):: Gabriel Popescu, Stephen Boppart, Rohit Bhargava, Logan Liu, Nahil Sobh
The 2010 summer school covers: Principles of Nano-Biophotonics Technology and methods of investigation Current research (e.g. biomolecular sensing, nanoprobes, nonlinear microscopy, nanoscopy, nanoplasmonics)
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A Fast Multigrid Approach for Solving the Helmholtz Equation with a Point Source
04 Feb 2016 | | Contributor(s):: Eran Treister
Solving the discretized Helmholtz equations with high wave numbers in large dimensions is a challenging task. However, in many scenarios, the solution of these equations is required for a point source. In this case, the problem can be be reformulated and split into two parts: one in a solution of...
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A Massively Parallel Semicoarsening Multigrid for 3D Reservoir Simulation on Multi-core and Multi-GPU Architectures
04 Feb 2016 | | Contributor(s):: Abdulrahman Manea
In this work, we have designed and implemented a massively parallel version of the Semicoarsening Black Box Multigrid Solver [1], which is capable of handling highly heterogeneous and anisotropic 3D reservoirs, on a parallel architecture with multiple GPU’s. For comparison purposes, the...
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A Microfluidics Approach to Probing Neuronal Filopodia
12 Apr 2016 |
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A Multigrid Method for the Self-Adjoint Angular Flux Form of the Radiation-Transport Equation Based on Cellwise Block Jacobi Iteration
04 Feb 2016 | | Contributor(s):: Jeffrey Densmore
Cellwise block Jacobi iteration is a technique for radiation-transport calculations in which the angular flux for all directions is solved for simultaneously within a spatial cell with the angular flux in neighboring cells held fixed. Each step of the iteration then involves the inversion of a...
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A Performance Comparison of Algebraic Multigrid Preconditioners on GPUs and MIC
04 Feb 2016 | | Contributor(s):: Karl Rupp
Algebraic multigrid (AMG) preconditioners for accelerators such as graphics processing units (GPUs) and Intel's many-integrated core (MIC) architecture typically require a careful, problem-dependent trade-off between efficient hardware use, robustness, and convergence rate in order to...
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A Scalable Algorithm for Inverse Medium Problems with Multiple Sources
04 Feb 2016 | | Contributor(s):: Keith Kelly
We consider the problem of acoustic scattering as described by the free-space, time-harmonic scalar wave equation given by (0.1) along with radiation boundary conditions. Here, is a point in , is the source term, and is the wavenumber. Our formulation is based on potential theory....
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Accurate Chemical Master Equation (ACME)
20 May 2013 | | Contributor(s):: Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang
Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in biological networks.
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Advanced Parallel CPU Programming Part 2: Fundamentals of OmpSs
16 Aug 2013 | | Contributor(s):: Xavier Teruel
Tasking and Synchronization --> Data Sharing Attributes, Dependence Model, Other Tasking Directives Clauses, Taskwait, Synchronization, Outlined Task Syntax; Memory Regions, Nesting and Dependences --> Memory regions and dependences, Nested tasks and dependences, Using dependence sentinels;...