Tags: Visual Molecular Dynamics (VMD)

Description

VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.

All Categories (1-10 of 10)

  1. LegoGen

    05 Feb 2016 | | Contributor(s):: Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev

    Tool workflow for building DNA Brick structures automatically.

  2. Molecular Dynamics Showcase Builder

    09 Nov 2015 | | Contributor(s):: Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li

    Tool to create showcases for the Molecular Dynamics Showcase viewer.

  3. Request for more instructions and explanation

    Open | Responses: 1

    This pre-made demonstration and learning simulation is a great idea.

    It would be really helpful to augment the instructions with some explanations of what to do _after_ hitting...

    http://nanohub.org/answers/question/1362

  4. cadnano to PDB File Converter

    13 Nov 2013 | | Contributor(s):: Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

  5. Functionalization Workbench

    30 Aug 2013 | | Contributor(s):: AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

  6. [Illinois] Interdisciplinary Symposium on Advanced Nano/Biosystems (Design, Fabrication, and Characterization)

    27 Sep 2013 |

    The Interdisciplinary Symposium on Advanced Nano/Biosystems: Design, Fabrication, and Characterization aims to provide a stimulating discussing forum for recent advances in material design, fabrication and characterization techniques, including experiments, theories, computations, and modeling....

  7. Molecular Dynamics Showcase

    06 Jul 2013 | | Contributor(s):: Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev, George A. Howlett

    View interesting features of a molecular dynamics trajectory file

  8. [Illinois] Physics 550 Biomolecular Physics

    03 Sep 2013 | | Contributor(s):: Klaus Schulten, Taekjip Ha

        Physical concepts governing the structure and function of biological macromolecules; general properties, spatial structure, energy levels, dynamics and functions, and relation to other complex physical systems such as glasses; recent research in biomolecular physics; physical...

  9. [Illinois] Molecular and Multiscale Simulation Summer School

    08 May 2013 | | Contributor(s):: NanoBio Node

    This Summer School will train students in molecular simulation and simulation at multiple time and length scales. Instruction will be provided on quantum Monte Carlo simulation, molecular dynamics, coarse-grained simulations, and multiscale simulations with opportunities for hands-on experience...

  10. Illinois Phys550 Molecular Biophysics

    25 Jan 2010 | | Contributor(s):: Klaus Schulten

    Physical concepts governing the structure and function of biological macromolecules; general properties, spatial structure, energy levels, dynamics and functions, and relation to other complex physical systems such as glasses; recent research in biomolecular physics; physical techniques and...