LAMMPS (Large-Scale Atomic/Molecular Massively Parallel Simulator)
The Polymer Modeler tool, powered by LAAMPS, builds thermoplastic polymer chains and run LAMMPS to relax the chains and study mechanical properties.
The Atomic Stick-Slip tool, powered by LAMMPS, enables users to easily perform non-equilibrium molecular dynamics simulations of the atomic stick-slip that occurs between an atomic force microscope tip and substrate, and then analyze their simulation results quantitatively.
The Nano Heatflow tool, powered by LAMMPS, studies the transfer of energy between the vibrational modes of a carbon nanotube.