Introduction to the Unix command line

by Benjamin P Haley

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1 = History =
2 Most popular computer operating systems, like Microsoft Windows and Mac OS X, offer primarily (but not exclusively) graphical user interfaces. The user interacts with files and programs by pointing and clicking with a mouse. Unix, which is a considerably older operating system than Windows or OS X, also offers a graphical user interface (more than one, actually), but Unix originally presented a ''command line interface'', in which the user interacts with the operating system by typing commands at a text prompt and reading textual output from programs. The command line interface is alive and well in Unix today, and many Unix users consider it the most powerful and efficient system for basic operations like navigating through directories and handling files.
3
4 = Terminology =
5 In this document, we use the term Unix to refer to a family of operating systems. The look and feel of the graphical interfaces of these systems, as well as the file system layout, may differ significantly from one system to the next, but they all have their (conceptual) roots in the original Unix developed at Bell Labs. This family of operating systems includes Linux (also called GNU/Linux) distributions like Debian, Red Hat, and Ubuntu, as well as Sun Solaris. Mac OS X is a curious case; many of its users never touch the command line interface, but all the commands described below are all available in OS X. Many entertaining arguments about whether OS X is a true Unix can be found in programmer internet forums. Microsoft Windows offers a different command line interface than Unix, but a program called [http://www.cygwin.com/ Cygwin] provides a Unix interface for Windows.[[BR]][[BR]]
6 We also use the abbreviation OS to mean "operating system".
7
8 = Opening a Terminal =
9 In a modern Unix OS (that is, one with a graphical user interface) the command line interface is accessed through a program called a terminal. Below we show how to run a terminal program in some of the more popular graphical Unix environments, including GNOME and KDE, available in most Linux distributions, as well as Mac OS X.
10
11 === GNOME ===
12 In the GNOME desktop, click the Applications menu (typically in the upper left corner); in the Accessories menu, choose Terminal.[[BR]]
13 [[image(gnome_terminal.png)]]
14
15 === KDE ===
16 In the KDE desktop, click the main menu (with K superimposed over a gear), typically in the lower left corner; in the System menu, choose Konsole (the KDE terminal program).[[BR]]
17 [[image(kde_konsole.png)]]
18
19 === Mac OS X ===
20 In a Finder window, choose the Utilities folder.[[BR]]
21 [[image(osx_utilities.png)]][[BR]][[BR]]
22 In the Utilities folder, select the Terminal application.[[BR]]
23 [[image(osx_terminal.png)]][[BR]]
24
25 == A new window ==
26 The steps listed above should produce a new window on the screen, with a prompt and possibly a cursor. The prompt might be a simple character, like '''$''' or '''%''', or it might be the name of the computer and a number showing how many commands have been entered, like {{{coates[1]}}}. Regardless of the color of the window or cursor or the wording of the prompt, this terminal window is a Unix command line interface.
27
28 = Shell =
29 The prompt in a terminal window is the output of a program called the shell. The shell is the Unix command interpreter (it is actually a separate program from the terminal window program, but the shell starts automatically when a terminal window opens and exits when the terminal window closes). Unix offers several different shells, but for most of what we cover in this document, the differences between the shells are negligible.
30 [[BR]][[BR]]
31 The shell reads the characters typed next to the prompt in the terminal, until Enter or Return is typed. After Enter or Return, the shell interprets all the input characters as a command, runs the command, returns any text output from the command to be displayed in the terminal, and, finally, displays a new prompt, waiting for the next command.
32
33 -
names and paths: a-z, A-z, ., _, .dotfile
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= File names and paths =
34 -
no: /, *, &, %, space
+
Unix file names may contain letters (a-z, A-Z), numbers (0-9), and a few other characters, like the dot (.) and underscore (_). Certain characters should ''not'' be used in a file name, like slash (/), asterisk (*), ampersand (&), percent (%), and space ( ). These characters have special meaning in the Unix file system, or to the shell, and should be avoided in file names. Files whose names begin with a dot (.) are handled specially by some of the commands considered below.
35 +
[[BR]][[BR]]
36 +
Unix files live in directories, which are analogous to folders in Microsoft Windows.
37 /, hierarchy, ., ..
38
39 = Basic commands =
40 This section introduces the basic Unix command line ''utilities'', programs designed to do one specific task. The example images show a grey terminal window with black text and a prompt of the form {{{coates[N]}}}, where {{{N}}} is the number of commands which have been entered already.
41 [[BR]]
42 [[image(sample_terminal.png)]]
43
44 ls, pwd, cd, man, rm, mv, mkdir, ls -a, cat, ~, cp, rmdir, clear,
45
46 more advanced: grep, pipe, ssh, redirect, wildcards, man
47
48 = Links =
49 == Other useful Topics ==
50 * [/topics/SoftwareDevelopment Software Development]
51 * [/resources/5923 Using Subversion], a source code version management system
52 == Other websites ==
53 * [http://jura.wi.mit.edu/bio/education/bioinfo/pages/scripts/unix_cheat_sheet.html Unix cheat sheet] short summaries of key commands
54 * [http://www.ee.surrey.ac.uk/Teaching/Unix/ Unix tutorial]