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Sai Smaran S B

File not found error

When I upload my PDB file, it shows that it is successfully uploaded.

Then at the end of compiling it says

FileNotFoundError                         Traceback (most recent call last)
 in run_all(ignore)
     24     infile_is_pdb = False
---> 26     if extension == '.pdb' and conect_in_pdb(infile):
     27         print('Connectivity already in {}. Copying information ...'.format(infile))
     28         get_ipython().system('cp {infile} ./bonds/connected_pdb.pdb')

 in conect_in_pdb(infile)
      1 def conect_in_pdb(infile):
----> 3     with open(infile) as pdb_file:
      4         for line in pdb_file:
      5             if line.startswith('CONECT'):

FileNotFoundError: [Errno 2] No such file or directory: './data/./data/6vxx.pdb'

Can somebody help me with this?

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1 Responses

  1. 0 Like 0 Dislike

    Lorena Alzate-Vargas

    Hi. Please try again with the new installed version of the tool, it should work fine!

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