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resource/NewsletterV6
Volume 6, October 2016
Newsletter
3D at Purdue
3D in Focus
3D in Publications
3D in Meetings
3D at Purdue
New Thermogels for Culturing Cells in 3D Structures
Kinam Park and Bumsoo Han

Fig. 1. Co-culture of MCF-7 breast cancer cells and CCD-1068SK fibroblasts in a 3DCellMaker for five days. (Scale bar is 100 mm).
Fig. 2 Culture of T4-2 breast cancer cells after two days in a 3DCellMaker under a serum-free condition (20X objective; courtey picture from the Lelièvre laboratory).
3D in Focus
Angiogenesis is the process for new blood vessel formation through sprouting of endothelial cells from existing vessels. This process is regulated by biochemical and mechanical pathways. However, the effects of mechanical stimuli remain poorly appreciated and understood. Recent studies using microfabricated 3D culture systems have highlighted critical roles for flow-induced mechanical stimuli in angiogenesis. In this newsletter we are highlighting the work of Kim and colleagues on the role of mechanical stimuli in angiogenic sprouting using microfluidics.
Sudong Kim, Minhwan Chung, Jungho Ahn, Somin Leeb and Noo Li Jeon “Interstitial flow regulates the angiogenic response and phenotype of endothelial cells in a 3D culture model” Lab Chip, 2016, 16, 4189 - 4199
The authors have designed a microfluidic system with six parallel microchannels for the investigation of individual or combined effects of biochemical and mechanical factors during the initiation and outgrowth of angiogenic sprouts within the extracellular matrix. One of the two central channels is loaded with a fibrin matrix in which endothelial cells (ECs) are embedded (channel N); the other central channel contains an acellular fibrin matrix (channel S). The two outermost channels are used for the culture of stromal fibroblasts in the presence of fibrin. Fluidic channels located in-between the central and outermost channels are filled with culture medium with a flow at physiological level 0.1 – 4 μm S-1. The intent is for the soluble proangiogenic factors secreted by the fibroblasts to act on the ECs via the fluidic channels.
The initial phase of angiogenesis includes angiogenic sprout, vacuole formation within endothelial cells, and formation of a vascular network. Under static conditions in the device, angiogenic sprout extended from the cytoplasm of ECs (channel N), and these cells initiated vacuole formation that progressively developed into complex vascular networks. The sprouts extended first near the interface of channels N and S, and further into adjacent channel S where the ECs organized multicellular structures characterized by abundant actin-rich filopodia at their edges distal from the N channels thus, morphologically replicating the sprout tip of endothelial cells in vivo.
Moreover, the interstitial flow in the S to N direction in the fluidic channels promoted the formation of sprouts with a significantly greater number of filopodia projections compared to those formed under static conditions. In contrast, interstitial flow in the N to S direction completely inhibited the angiogenic sprouting. Unlike angiogenic sprouts, vacuole formation and the development of a vascular structure in channel N were not affected by the direction of the flow. Additional experiments confirmed that the interstitial flow controlled the initiation and sustained the growth of angiogenic sprouting. Reversing the direction of the interstitial flow to S-N abolished the suppressor effect of N-S flow on sprouting. On the other hand, reversing the flow direction from S-N to N-S had no effect on the existing vascular structure, but it induced less filopodia projections and the retraction of the forefront of the vasculature.
The model was subsequently examined for its capability to evaluate endothelial responses (i.e., sprout initiation, formation of vacuoles, vascular network formation) to extrinsic proangiogenic factors, such as VEGF, as well as anti-angiogenic compounds such as axitinib.
Angiogenesis is fundamental to many physiologic and pathologic processes such as cancer, ischemic diseases, and chronic inflammation. By acting as a proangiogenic stimulant, the interstitial flow in blood vessels can modulate the endothelial responses triggered by the biochemical stimuli such as VEGF. The authors propose that the device can help elucidate the relevant mechanisms and thus, may lead to the development of effective therapeutics for diseases associated with angiogenesis.
The model designed here is interesting because of the addition of fibroblasts compared to the usual stand-alone endothelial cells to study angiogenesis within a microfluidics platform. The fibroblasts provide the angiogenic factors, making the model more physiologically relevant.
3D in Publications
Complete List -- 3D culture related articles on PubMed (last 2 months)
Reviews
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3D in Publications
Complete List
Abbadessa, A., Blokzijl, M. M., Mouser, V. H., Marica, P., Malda, J., Hennink, W. E., and Vermonden, T. (2016). A thermo-responsive and photo-polymerizable chondroitin sulfate-based hydrogel for 3D printing applications. Carbohydr Polym 149, 163-174.
Adams, C. F., Dickson, A. W., Kuiper, J. H., and Chari, D. M. (2016). Nanoengineering neural stem cells on biomimetic substrates using magnetofection technology. Nanoscale 8, 17869-17880.
Aihara, A., Abe, N., Saruhashi, K., Kanaki, T., and Nishino, T. (2016). A Novel 3-D Cell Culture System for In Vitro Evaluation of Anticancer Drugs under Anchorage-Independent Conditions. Cancer Sci.
Akasov, R., Gileva, A., Zaytseva-Zotova, D., Burov, S., Chevalot, I., Guedon, E., and Markvicheva, E. (2016). 3D in vitro co-culture models based on normal cells and tumor spheroids formed by cyclic RGD-peptide induced cell self-assembly. Biotechnol Lett.
Alborzinia, H., Shaikhkarami, M., Hortschansky, P., and Wolfl, S. (2016). BMP2 Transfer to Neighboring Cells and Activation of Signaling. Traffic 17, 1042-1053.
Alexander, P. G., Clark, K. L., and Tuan, R. S. (2016). Prenatal exposure to environmental factors and congenital limb defects. Birth Defects Res C Embryo Today.
Allen, E. L., Ulanet, D. B., Pirman, D., Mahoney, C. E., Coco, J., Si, Y., Chen, Y., Huang, L., Ren, J., Choe, S., et al. (2016). Differential Aspartate Usage Identifies a Subset of Cancer Cells Particularly Dependent on OGDH. Cell Rep 17, 876-890.
Amaral, A. J., and Pasparakis, G. (2016). Rapid Formation of Cell Aggregates and Spheroids Induced by a "Smart" Boronic Acid Copolymer. ACS Appl Mater Interfaces 8, 22930-22941.
Arai, K., Eguchi, T., Rahman, M. M., Sakamoto, R., Masuda, N., Nakatsura, T., Calderwood, S. K., Kozaki, K., and Itoh, M. (2016a). A Novel High-Throughput 3D Screening System for EMT Inhibitors: A Pilot Screening Discovered the EMT Inhibitory Activity of CDK2 Inhibitor SU9516. PLoS One 11, e0162394.
Arai, K., Yoshida, T., Okabe, M., Goto, M., Mir, T. A., Soko, C., Tsukamoto, Y., Akaike, T., Nikaido, T., Zhou, K., and Nakamura, M. (2016b). Fabrication of 3D-culture platform with sandwich architecture for preserving liver-specific functions of hepatocytes using 3D bioprinter. J Biomed Mater Res A.
Ardjomandi, N., Huth, J., Stamov, D. R., Henrich, A., Klein, C., Wendel, H. P., Reinert, S., and Alexander, D. (2016). Surface biofunctionalization of beta-TCP blocks using aptamer 74 for bone tissue engineering. Mater Sci Eng C Mater Biol Appl 67, 267-275.
Arevalos, C. A., Berg, J. M., Nguyen, J. M., Godfrey, E. L., Iriondo, C., and Grande-Allen, K. J. (2016). Valve Interstitial Cells Act in a Pericyte Manner Promoting Angiogensis and Invasion by Valve Endothelial Cells. Ann Biomed Eng 44, 2707-2723.
Arjmand, F., Khanmohammadi, M., Arasteh, S., Mohammadzadeh, A., Kazemnejad, S., and Akhondi, M. M. (2016). Extended Culture of Encapsulated Human Blastocysts in Alginate Hydrogel Containing Decidualized Endometrial Stromal Cells in the Presence of Melatonin. Mol Biotechnol 58, 684-694.
Arya, A. D., Hallur, P. M., Karkisaval, A. G., Gudipati, A., Rajendiran, S., Dhavale, V., Ramachandran, B., Jayaprakash, A., Gundiah, N., and Chaubey, A. (2016). Gelatin Methacrylate Hydrogels as Biomimetic Three-Dimensional Matrixes for Modeling Breast Cancer Invasion and Chemoresponse in Vitro. ACS Appl Mater Interfaces 8, 22005-22017.
Backer, A., Erhardt, O., Wietbrock, L., Schel, N., Goppert, B., Abaffy, P., Sollich, T., Cecilia, A., and Gruhl, F. J. (2016). Silk scaffolds connected with different naturally occurring biomaterials for prostate cancer cell cultivation in 3D. Biopolymers.
Bartfeld, S. (2016). Modeling infectious diseases and host-microbe interactions in gastrointestinal organoids. Dev Biol.
Belli, V., Guarnieri, D., Biondi, M., Della Sala, F., and Netti, P. A. (2016). Dynamics of nanoparticle diffusion and uptake in three-dimensional cell cultures. Colloids Surf B Biointerfaces 149, 7-15.
Bhatia, M., Lovitt, C. J., Raninga, P. V., Avery, V. M., Di Trapani, G., and Tonissen, K. F. (2016). Expression of the thioredoxin system in an in vivo-like cancer cell environment upon auranofin treatment. Eur J Cell Biol 95, 378-388.
Boehme, K. A., Nitsch, J., Riester, R., Handgretinger, R., Schleicher, S. B., Kluba, T., and Traub, F. (2016). Arsenic trioxide potentiates the effectiveness of etoposide in Ewing sarcomas. Int J Oncol.
Bono, N., Pezzoli, D., Levesque, L., Loy, C., Candiani, G., Fiore, G. B., and Mantovani, D. (2016). Unraveling the role of mechanical stimulation on smooth muscle cells: A comparative study between 2D and 3D models. Biotechnol Bioeng 113, 2254-2263.
Booij, T. H., Klop, M. J., Yan, K., Szantai-Kis, C., Szokol, B., Orfi, L., van de Water, B., Keri, G., and Price, L. S. (2016). Development of a 3D Tissue Culture-Based High-Content Screening Platform That Uses Phenotypic Profiling to Discriminate Selective Inhibitors of Receptor Tyrosine Kinases. J Biomol Screen 21, 912-922.
Borg, D. J., Welzel, P. B., Grimmer, M., Friedrichs, J., Weigelt, M., Wilhelm, C., Prewitz, M., Stissel, A., Hommel, A., Kurth, T., et al. (2016). Macroporous biohybrid cryogels for co-housing pancreatic islets with mesenchymal stromal cells. Acta Biomater 44, 178-187.
Bradley, R. S., Robinson, I. K., and Yusuf, M. (2016). 3D X-Ray Nanotomography of Cells Grown on Electrospun Scaffolds. Macromol Biosci.
Brandenberg, N., and Lutolf, M. P. (2016). In Situ Patterning of Microfluidic Networks in 3D Cell-Laden Hydrogels. Adv Mater 28, 7450-7456.
Bretschneider, H., Stiehler, M., Hartmann, A., Boger, E., Osswald, C., Mollenhauer, J., Gaissmaier, C., and Gunther, K. P. (2016). Characterization of primary chondrocytes harvested from hips with femoroacetabular impingement. Osteoarthritis Cartilage 24, 1622-1628.
Brooks, J. C., Ford, K. I., Holder, D. H., Holtan, M. D., and Easley, C. J. (2016). Macro-to-micro interfacing to microfluidic channels using 3D-printed templates: application to time-resolved secretion sampling of endocrine tissue. Analyst 141, 5714-5721.
Broutier, L., Andersson-Rolf, A., Hindley, C. J., Boj, S. F., Clevers, H., Koo, B. K., and Huch, M. (2016). Culture and establishment of self-renewing human and mouse adult liver and pancreas 3D organoids and their genetic manipulation. Nat Protoc 11, 1724-1743.
Cairns, D. M., Chwalek, K., Moore, Y. E., Kelley, M. R., Abbott, R. D., Moss, S., and Kaplan, D. L. (2016). Expandable and Rapidly Differentiating Human Induced Neural Stem Cell Lines for Multiple Tissue Engineering Applications. Stem Cell Reports 7, 557-570.
Carvalho, M. P., Costa, E. C., Miguel, S. P., and Correia, I. J. (2016). Tumor spheroid assembly on hyaluronic acid-based structures: A review. Carbohydr Polym 150, 139-148.
Celik, E., Bayram, C., Akcapinar, R., Turk, M., and Denkbas, E. B. (2016). The effect of calcium chloride concentration on alginate/Fmoc-diphenylalanine hydrogel networks. Mater Sci Eng C Mater Biol Appl 66, 221-229.
Cepeda, M. A., Pelling, J. J., Evered, C. L., Williams, K. C., Freedman, Z., Stan, I., Willson, J. A., Leong, H. S., and Damjanovski, S. (2016). Less is more: low expression of MT1-MMP is optimal to promote migration and tumourigenesis of breast cancer cells. Mol Cancer 15, 65.
Chai, Y. W., Lee, E. H., Gubbe, J. D., and Brekke, J. H. (2016). 3D Cell Culture in a Self-Assembled Nanofiber Environment. PLoS One 11, e0162853.
Chatzinikolaidou, M. (2016). Cell spheroids: the new frontiers in in vitro models for cancer drug validation. Drug Discov Today 21, 1553-1560.
Chatzinikolaidou, M., Pontikoglou, C., Terzaki, K., Kaliva, M., Kalyva, A., Papadaki, E., Vamvakaki, M., and Farsari, M. (2016). Recombinant human bone morphogenetic protein 2 (rhBMP-2) immobilized on laser-fabricated 3D scaffolds enhance osteogenesis. Colloids Surf B Biointerfaces 149, 233-242.
Chen, C., Mehl, B. T., Sell, S. A., and Martin, R. S. (2016a). Use of electrospinning and dynamic air focusing to create three-dimensional cell culture scaffolds in microfluidic devices. Analyst 141, 5311-5320.
Chen, C. S. (2016). 3D Biomimetic Cultures: The Next Platform for Cell Biology. Trends Cell Biol.
Chen, H. Y., Kaya, K. D., Dong, L., and Swaroop, A. (2016b). Three-dimensional retinal organoids from mouse pluripotent stem cells mimic in vivo development with enhanced stratification and rod photoreceptor differentiation. Mol Vis 22, 1077-1094.
Chimenti, I., Pagano, F., Angelini, F., Siciliano, C., Mangino, G., Picchio, V., De Falco, E., Peruzzi, M., Carnevale, R., Ibrahim, M., et al. (2016). Human Lung Spheroids as In Vitro Niches of Lung Progenitor Cells With Distinctive Paracrine and Plasticity Properties. Stem Cells Transl Med.
Chingwaru, W., Glashoff, R. H., Vidmar, J., Kapewangolo, P., and Sampson, S. L. (2016). Mammalian cell cultures as models for Mycobacterium tuberculosis-human immunodeficiency virus (HIV) interaction studies: A review. Asian Pac J Trop Med 9, 832-838.
Chitrangi, S., Nair, P., and Khanna, A. (2016). 3D engineered In vitrohepatospheroids for studying drug toxicity and metabolism. Toxicol In Vitro.
Choi, J., Iich, E., and Lee, J. H. (2016). Organogenesis of adult lung in a dish: Differentiation, disease and therapy. Dev Biol.
Colacino, J. A. (2016). 3D human tissue culture: modeling environmental effects on the stem cell epigenome. Epigenomics.
Colak, B., Da Silva, J. C., Soares, T. A., and Gautrot, J. E. (2016). Impact of the Molecular Environment on Thiol-Ene Coupling For Biofunctionalization and Conjugation. Bioconjug Chem 27, 2111-2123.
Connell, J. L., Ritschdorff, E. T., and Shear, J. B. (2016). 3D Printing of Photoresponsive Biomaterials for Control of Bacterial Microenvironments. Anal Chem.
Cudre-Cung, H. P., Zavadakova, P., do Vale-Pereira, S., Remacle, N., Henry, H., Ivanisevic, J., Tavel, D., Braissant, O., and Ballhausen, D. (2016). Ammonium accumulation is a primary effect of 2-methylcitrate exposure in an in vitro model for brain damage in methylmalonic aciduria. Mol Genet Metab 119, 57-67.
Dai, X., Ma, C., Lan, Q., and Xu, T. (2016). 3D bioprinted glioma stem cells for brain tumor model and applications of drug susceptibility. Biofabrication 8, 045005.
Das, P. K., Puusepp, L., Varghese, F. S., Utt, A., Ahola, T., Kananovich, D. G., Lopp, M., Merits, A., and Karelson, M. (2016). Design and validation of novel chikungunya virus protease inhibitors. Antimicrob Agents Chemother.
Deharde, D., Schneider, C., Hiller, T., Fischer, N., Kegel, V., Lubberstedt, M., Freyer, N., Hengstler, J. G., Andersson, T. B., Seehofer, D., et al. (2016). Bile canaliculi formation and biliary transport in 3D sandwich-cultured hepatocytes in dependence of the extracellular matrix composition. Arch Toxicol 90, 2497-2511.
DeJonge, R. E., Liu, X. P., Deig, C. R., Heller, S., Koehler, K. R., and Hashino, E. (2016). Modulation of Wnt Signaling Enhances Inner Ear Organoid Development in 3D Culture. PLoS One 11, e0162508.
Diermeier, S. D., Chang, K. C., Freier, S. M., Song, J., El Demerdash, O., Krasnitz, A., Rigo, F., Bennett, C. F., and Spector, D. L. (2016). Mammary Tumor-Associated RNAs Impact Tumor Cell Proliferation, Invasion, and Migration. Cell Rep 17, 261-274.
Dong, W., Lu, A., Zhao, J., Yin, S., Ou, B., and Feng, H. (2016). An efficient and simple co-culture method for isolating primary human hepatic cells: Potential application for tumor microenvironment research. Oncol Rep 36, 2126-2134.
Dubiak-Szepietowska, M., Karczmarczyk, A., Winckler, T., and Feller, K. H. (2016). A cell-based biosensor for nanomaterials cytotoxicity assessment in three dimensional cell culture. Toxicology 370, 60-69.
Eder, T., Weber, A., Neuwirt, H., Grunbacher, G., Ploner, C., Klocker, H., Sampson, N., and Eder, I. E. (2016). Cancer-Associated Fibroblasts Modify the Response of Prostate Cancer Cells to Androgen and Anti-Androgens in Three-Dimensional Spheroid Culture. Int J Mol Sci 17.
Fan, R., Piou, M., Darling, E., Cormier, D., Sun, J., and Wan, J. (2016). Bio-printing cell-laden Matrigel-agarose constructs. J Biomater Appl.
Fitzgerald, K. A., Guo, J., Raftery, R. M., Castano, I. M., Curtin, C. M., Gooding, M., Darcy, R., FJ, O. B., and CM, O. D. (2016). Nanoparticle-mediated siRNA delivery assessed in a 3D co-culture model simulating prostate cancer bone metastasis. Int J Pharm 511, 1058-1069.
Flanagan, D. J., Schwab, R. H., Tran, B. M., Phesse, T. J., and Vincan, E. (2016). Isolation and Culture of Adult Intestinal, Gastric, and Liver Organoids for Cre-recombinase-Mediated Gene Deletion. Methods Mol Biol.
Flood, P., Alvarez, L., and Reynaud, E. G. (2016). Free-floating epithelial micro-tissue arrays: a low cost and versatile technique. Biofabrication 8, 045006.
Fong, E. L., Harrington, D. A., Farach-Carson, M. C., and Yu, H. (2016). Heralding a new paradigm in 3D tumor modeling. Biomaterials 108, 197-213.
Funk, C., and Roth, A. (2016). Current limitations and future opportunities for prediction of DILI from in vitro. Arch Toxicol.
Galli, C., Parisi, L., Piergianni, M., Smerieri, A., Passeri, G., Guizzardi, S., Costa, F., Lumetti, S., Manfredi, E., and Macaluso, G. M. (2016). Improved scaffold biocompatibility through anti-Fibronectin aptamer functionalization. Acta Biomater 42, 147-156.
Galuppo, A. G., Chagastelles, P. C., Gamba, D., Iglesias, D. B., Sperling, L., Machado, J., Wendorff, J., Petzhold, C. L., and Pranke, P. (2016). Effect of feeder free poly(lactide-co-glycolide) scaffolds on morphology, proliferation and pluripotency of mouse embryonic stem cells. J Biomed Mater Res A.
Gao, Q., Wang, Z. C., Duan, M., Lin, Y. H., Zhou, X. Y., Worthley, D. L., Wang, X. Y., Niu, G., Xia, Y., Deng, M., et al. (2016). Cell Culture System for Analysis of Genetic Heterogeneity Within Hepatocellular Carcinomas and Response to Pharmacologic Agents. Gastroenterology.
Ghanavati, Z., Orazizadeh, M., Bayati, V., Abbaspour, M. R., Khorsandi, L., Mansouri, E., and Neisi, N. (2016). Characterization of A Three-Dimensional Organotypic Co-Culture Skin Model for Epidermal Differentiation of Rat Adipose-Derived Stem Cells. Cell J 18, 289-301.
Gomes, A., Guillaume, L., Grimes, D. R., Fehrenbach, J., Lobjois, V., and Ducommun, B. (2016). Oxygen Partial Pressure Is a Rate-Limiting Parameter for Cell Proliferation in 3D Spheroids Grown in Physioxic Culture Condition. PLoS One 11, e0161239.
Gomez-Leduc, T., Hervieu, M., Legendre, F., Bouyoucef, M., Gruchy, N., Poulain, L., de Vienne, C., Herlicoviez, M., Demoor, M., and Galera, P. (2016). Chondrogenic commitment of human umbilical cord blood-derived mesenchymal stem cells in collagen matrices for cartilage engineering. Sci Rep 6, 32786.
Gomez-Roman, N., Stevenson, K., Gilmour, L., Hamilton, G., and Chalmers, A. J. (2016). A novel 3D human glioblastoma cell culture system for modeling drug and radiation responses. Neuro Oncol.
Gonzalez-Valverde, I., Semino, C., and Garcia-Aznar, J. M. (2016). Phenomenological modelling and simulation of cell clusters in 3D cultures. Comput Biol Med 77, 249-260.
Gorgun, C., Ozturk, S., Gokalp, S., Vatansever, S., Gurhan, S. I., and Urkmez, A. S. (2016). Synergistic role of three dimensional niche and hypoxia on conservation of cancer stem cell phenotype. Int J Biol Macromol 90, 20-26.
Guneta, V., Tan, N. S., Chan, S. K., Tanavde, V., Lim, T. C., Wong, T. C., and Choong, C. (2016). Comparative study of adipose-derived stem cells and bone marrow-derived stem cells in similar microenvironmental conditions. Exp Cell Res.
Gurusinghe, S., Hilbert, B., Trope, G., Wang, L., Bandara, N., and Strappe, P. (2016). Generation of Immortalised Equine Chondrocytes With Inducible Sox9 Expression Allows Control of Hypertrophic Differentiation. J Cell Biochem.
Han, H. W., and Hsu, S. H. (2016). Chitosan-hyaluronan based 3D co-culture platform for studying the crosstalk of lung cancer cells and mesenchymal stem cells. Acta Biomater 42, 157-167.
Hansen, M., Met, O., Larsen, N. B., Rosenkilde, M. M., Andersen, M. H., Svane, I. M., and Hjorto, G. M. (2016). Autocrine CCL19 blocks dendritic cell migration toward weak gradients of CCL21. Cytotherapy 18, 1187-1196.
Hao, Y., Zerdoum, A. B., Stuffer, A. J., Rajasekaran, A. K., and Jia, X. (2016). Biomimetic Hydrogels Incorporating Polymeric Cell-Adhesive Peptide to Promote the 3D Assembly of Tumoroids. Biomacromolecules.
Haque, A., Gheibi, P., Gao, Y., Foster, E., Son, K. J., You, J., Stybayeva, G., Patel, D., and Revzin, A. (2016). Cell biology is different in small volumes: endogenous signals shape phenotype of primary hepatocytes cultured in microfluidic channels. Sci Rep 6, 33980.
Harris, S., Shubin, S. P., Wegner, S., Van Ness, K., Green, F., Hong, S. W., and Faustman, E. M. (2016). The presence of macrophages and inflammatory responses in an in vitro testicular co-culture model of male reproductive development enhance relevance to in vivo conditions. Toxicol In Vitro 36, 210-215.
Heidari Kani, M., Chan, E. C., Young, R. C., Butler, T., Smith, R., and Paul, J. W. (2016). 3D Cell Culturing and Possibilities for Myometrial Tissue Engineering. Ann Biomed Eng.
Hibiya, S., Tsuchiya, K., Hayashi, R., Fukushima, K., Horita, N., Watanabe, S., Shirasaki, T., Nishimura, R., Kimura, N., Nishimura, T., et al. (2016). Long-term inflammation transforms intestinal epithelial cells of colonic organoids. J Crohns Colitis.
Higuchi, Y., Kawai, K., Kanaki, T., Yamazaki, H., Chesne, C., Guguen-Guillouzo, C., and Suemizu, H. (2016). Functional polymer-dependent 3D culture accelerates the differentiation of HepaRG cells into mature hepatocytes. Hepatol Res 46, 1045-1057.
Hiler, D. J., Barabas, M. E., Griffiths, L. M., and Dyer, M. A. (2016). Reprogramming of mouse retinal neurons and standardized quantification of their differentiation in 3D retinal cultures. Nat Protoc 11, 1955-1976.
Hinton, T. J., Hudson, A., Pusch, K., Lee, A., and Feinberg, A. W. (2016). 3D Printing PDMS Elastomer in a Hydrophilic Support Bath via Freeform Reversible Embedding. ACS Biomater Sci Eng 2, 1781-1786.
Hof, A., Raschke, S., Baier, K., Nehrenheim, L., Selig, J. I., Schomaker, M., Lichtenberg, A., Meyer, H., and Akhyari, P. (2016). Challenges in developing a reseeded, tissue-engineered aortic valve prosthesis. Eur J Cardiothorac Surg 50, 446-455.
Hogrebe, N. J., and Gooch, K. J. (2016). Direct influence of culture dimensionality on human Mesenchymal stem cells differentiation at various matrix stiffnesses using a fibrous self-assembling peptide hydrogel. J Biomed Mater Res A 104, 2356-2368.
Hogrebe, N. J., Reinhardt, J. W., and Gooch, K. J. (2016). Biomaterial microarchitecture: A potent regulator of individual cell behavior and multicellular organization. J Biomed Mater Res A.
Horvath, P., Aulner, N., Bickle, M., Davies, A. M., Nery, E. D., Ebner, D., Montoya, M. C., Ostling, P., Pietiainen, V., Price, L. S., et al. (2016). Screening out irrelevant cell-based models of disease. Nat Rev Drug Discov.
Hoshi, K., Fujihara, Y., Mori, Y., Asawa, Y., Kanazawa, S., Nishizawa, S., Misawa, M., Numano, T., Inoue, H., Sakamoto, T., et al. (2016). Production of three-dimensional tissue-engineered cartilage through mutual fusion of chondrocyte pellets. Int J Oral Maxillofac Surg 45, 1177-1185.
Huang, M., Li, T., Pan, T., Zhao, N., Yao, Y., Zhai, Z., Zhou, J., Du, C., and Wang, Y. (2016). Controlling the strontium-doping in calcium phosphate microcapsules through yeast-regulated biomimetic mineralization. Regen Biomater 3, 269-276.
Irvine, S. A., and Venkatraman, S. S. (2016). Bioprinting and Differentiation of Stem Cells. Molecules 21.
Ishiguro, S., Cai, S., Uppalapati, D., Turner, K., Zhang, T., Forrest, W. C., Forrest, M. L., and Tamura, M. (2016). Intratracheal Administration of Hyaluronan-Cisplatin Conjugate Nanoparticles Significantly Attenuates Lung Cancer Growth in Mice. Pharm Res 33, 2517-2529.
Ivanov, D. P., Coyle, B., Walker, D. A., and Grabowska, A. M. (2016). In vitro models of medulloblastoma: Choosing the right tool for the job. J Biotechnol 236, 10-25.
Jakob, P. H., Kehrer, J., Flood, P., Wiegel, C., Haselmann, U., Meissner, M., Stelzer, E. H., and Reynaud, E. G. (2016). A 3-D cell culture system to study epithelia functions using microcarriers. Cytotechnology 68, 1813-1825.
Jakubikova, J., Cholujova, D., Hideshima, T., Gronesova, P., Soltysova, A., Harada, T., Joo, J., Kong, S. Y., Szalat, R. E., Richardson, P. G., et al. (2016). A novel 3D mesenchymal stem cell model of the multiple myeloma bone marrow niche: biologic and clinical applications. Oncotarget.
Jang, J. W., Song, Y., Kim, K. M., Kim, J. S., Choi, E. K., Kim, J., and Seo, H. (2016). Hepatocellular carcinoma-targeted drug discovery through image-based phenotypic screening in co-cultures of HCC cells with hepatocytes. BMC Cancer 16, 810.
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Stankevicius, V., Vasauskas, G., Noreikiene, R., Kuodyte, K., Valius, M., and Suziedelis, K. (2016b). Extracellular Matrix-dependent Pathways in Colorectal Cancer Cell Lines Reveal Potential Targets for Anticancer Therapies. Anticancer Res 36, 4559-4567.
Su, X., Fang, D., Liu, Y., Ramamoorthi, M., Zeitouni, A., Chen, W., and Tran, S. D. (2016). Three-dimensional organotypic culture of human salivary glands: the slice culture model. Oral Dis 22, 639-648.
Sun, M., Liu, A., Shao, H., Yang, X., Ma, C., Yan, S., Liu, Y., He, Y., and Gou, Z. (2016). Systematical Evaluation of Mechanically Strong 3D Printed Diluted magnesium Doping Wollastonite Scaffolds on Osteogenic Capacity in Rabbit Calvarial Defects. Sci Rep 6, 34029.
Takai, K., Le, A., Weaver, V. M., and Werb, Z. (2016). Targeting the cancer-associated fibroblasts as a treatment in triple-negative breast cancer. Oncotarget.
Takasato, M., Er, P. X., Chiu, H. S., and Little, M. H. (2016). Generation of kidney organoids from human pluripotent stem cells. Nat Protoc 11, 1681-1692.
Tanimizu, N., and Mitaka, T. (2016). Morphogenesis of liver epithelial cells. Hepatol Res 46, 964-976.
Teixeira, F. G., Vasconcelos, N. L., Gomes, E. D., Marques, F., Sousa, J. C., Sousa, N., Silva, N. A., Assuncao-Silva, R., Lima, R., and Salgado, A. J. (2016a). Bioengineered cell culture systems of central nervous system injury and disease. Drug Discov Today 21, 1456-1463.
Teixeira, S. F., de Azevedo, R. A., Silva, A. C., Braga, R. C., Jorge, S. D., Barbuto, J. A., Andrade, C. H., and Ferreira, A. K. (2016b). Evaluation of cytotoxic effect of the combination of a pyridinyl carboxamide derivative and oxaliplatin on NCI-H1299 human non-small cell lung carcinoma cells. Biomed Pharmacother 84, 1019-1028.
Terrasso, A. P., Silva, A. C., Filipe, A., Pedroso, P., Ferreira, A. L., Alves, P. M., and Brito, C. (2016). Human neuron-astrocyte 3D co-culture-based assay for evaluation of neuroprotective compounds. J Pharmacol Toxicol Methods 83, 72-79.
Ushijima, H., Horyozaki, A., and Maeda, M. (2016). Anisomycin-induced GATA-6 degradation accompanying a decrease of proliferation of colorectal cancer cell. Biochem Biophys Res Commun 478, 481-485.
Uzun, A. U., Mannhardt, I., Breckwoldt, K., Horvath, A., Johannsen, S. S., Hansen, A., Eschenhagen, T., and Christ, T. (2016). Ca(2+)-Currents in Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes Effects of Two Different Culture Conditions. Front Pharmacol 7, 300.
Waisbourd-Zinman, O., Koh, H., Tsai, S., Lavrut, P. M., Dang, C., Zhao, X., Pack, M., Cave, J., Hawes, M., Koo, K. A., et al. (2016). The toxin biliatresone causes mouse extrahepatic cholangiocyte damage and fibrosis through decreased glutathione and SOX17. Hepatology 64, 880-893.
Walker, S., Foster, F., Wood, A., Owens, T., Brennan, K., Streuli, C. H., and Gilmore, A. P. (2016). Oncogenic activation of FAK drives apoptosis suppression in a 3D-culture model of breast cancer initiation. Oncotarget.
Wang, B., Jakus, A. E., Baptista, P. M., Soker, S., Soto-Gutierrez, A., Abecassis, M. M., Shah, R. N., and Wertheim, J. A. (2016a). Functional Maturation of Induced Pluripotent Stem Cell Hepatocytes in Extracellular Matrix-A Comparative Analysis of Bioartificial Liver Microenvironments. Stem Cells Transl Med 5, 1257-1267.
Wang, M., Nagle, R. B., Knudsen, B. S., Rogers, G. C., and Cress, A. E. (2016b). A basal cell defect promotes budding of prostatic intraepithelial neoplasia. J Cell Sci.
Wang, P. Y., Thissen, H., and Kingshott, P. (2016c). Modulation of human multipotent and pluripotent stem cells using surface nanotopographies and surface-immobilised bioactive signals: A review. Acta Biomater.
Wang, X., Cheng, F., Liu, J., Smatt, J. H., Gepperth, D., Lastusaari, M., Xu, C., and Hupa, L. (2016d). Biocomposites of copper-containing mesoporous bioactive glass and nanofibrillated cellulose: Biocompatibility and angiogenic promotion in chronic wound healing application. Acta Biomater.
Ware, M. J., Keshishian, V., Law, J. J., Ho, J. C., Favela, C. A., Rees, P., Smith, B., Mohammad, S., Hwang, R. F., Rajapakshe, K., et al. (2016). Generation of an in vitro 3D PDAC stroma rich spheroid model. Biomaterials 108, 129-142.
Westphal, I., Jedelhauser, C., Liebsch, G., Wilhelmi, A., Aszodi, A., and Schieker, M. (2016). Oxygen mapping: Probing a novel seeding strategy for bone tissue engineering. Biotechnol Bioeng.
Wills, J. W., Hondow, N., Thomas, A. D., Chapman, K. E., Fish, D., Maffeis, T. G., Penny, M. W., Brown, R. A., Jenkins, G. J., Brown, A. P., et al. (2016). Genetic toxicity assessment of engineered nanoparticles using a 3D in vitro skin model (EpiDerm). Part Fibre Toxicol 13, 50.
Wollrab, V., Caballero, D., Thiagarajan, R., and Riveline, D. (2016). Ordering Single Cells and Single Embryos in 3D Confinement: A New Device for High Content Screening. J Vis Exp.
Xinguo, Y., Li, S., Chen, X., Zhan, Y., and Li, X. (2016). Polyethylenimine/silk fibroin multilayers deposited nanofibrics for cell culture. Int J Biol Macromol.
Xu, Q., He, C., Zhang, Z., Ren, K., and Chen, X. (2016). Injectable, biomolecule-responsive polypeptide hydrogels for cell encapsulation and facile cell recovery through triggered degradation. ACS Appl Mater Interfaces.
Xue, C., Xie, J., Zhao, D., Lin, S., Zhou, T., Shi, S., Shao, X., Lin, Y., Zhu, B., and Cai, X. (2016). The JAK/STAT3 signalling pathway regulated angiogenesis in an endothelial cell/adipose-derived stromal cell co-culture, 3D gel model. Cell Prolif.
Yeh, Y. C., Highley, C. B., Ouyang, L., and Burdick, J. A. (2016). 3D printing of photocurable poly(glycerol sebacate) elastomers. Biofabrication 8, 045004.
Yin, Y., Wang, Y., Dang, W., Xu, L., Su, J., Zhou, X., Wang, W., Felczak, K., van der Laan, L. J., Pankiewicz, K. W., et al. (2016). Mycophenolic acid potently inhibits rotavirus infection with a high barrier to resistance development. Antiviral Res 133, 41-49.
Yue, X., Lukowski, J. K., Weaver, E. M., Skube, S. B., and Hummon, A. B. (2016). Quantitative Proteomic and Phosphoproteomic Comparison of 2D and 3D Colon Cancer Cell Culture Models. J Proteome Res.
Zeilinger, K., Freyer, N., Damm, G., Seehofer, D., and Knospel, F. (2016). Cell sources for in vitro human liver cell culture models. Exp Biol Med (Maywood) 241, 1684-1698.
Zhan, K., Lin, M., Liu, M., Sui, Y., Babekir, H. M., and Zhao, G. (2016). Three-dimensional culture system can induce expression of casein in immortalized bovine mammary epithelial cells. Anim Sci J.
Zhang, H., Siegel, C. T., Li, J., Lai, J., Shuai, L., Lai, X., Zhang, Y., Jiang, Y., Bie, P., and Bai, L. (2016a). Functional liver tissue engineering by an adult mouse liver-derived neuro-glia antigen 2-expressing stem/progenitor population. J Tissue Eng Regen Med.
Zhang, W., Li, C., Baguley, B. C., Zhou, F., Zhou, W., Shaw, J. P., Wang, Z., Wu, Z., and Liu, J. (2016b). Optimization of the formation of embedded multicellular spheroids of MCF-7 cells: How to reliably produce a biomimetic 3D model. Anal Biochem.
Zhao, J., Zeng, Z., Sun, J., Zhang, Y., Li, D., Zhang, X., Liu, M., and Wang, X. (2016). A Novel Model of P-Glycoprotein Inhibitor Screening Using Human Small Intestinal Organoids. Basic Clin Pharmacol Toxicol.
Zhou, A., Chen, S., He, B., Zhao, W., Chen, X., and Jiang, D. (2016a). Controlled release of TGF-beta 1 from RADA self-assembling peptide hydrogel scaffolds. Drug Des Devel Ther 10, 3043-3051.
Zhou, L., Yang, K., Wickett, R. R., Kadekaro, A. L., and Zhang, Y. (2016b). Targeted deactivation of cancer-associated fibroblasts by beta-catenin ablation suppresses melanoma growth. Tumour Biol.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016c). 3D Bioprinting a Cell-laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Reviews
Alexander, P. G., Clark, K. L., and Tuan, R. S. (2016). Prenatal exposure to environmental factors and congenital limb defects. Birth Defects Res C Embryo Today.
Bartfeld, S. (2016). Modeling infectious diseases and host-microbe interactions in gastrointestinal organoids. Dev Biol.
Carvalho, M. P., Costa, E. C., Miguel, S. P., and Correia, I. J. (2016). Tumor spheroid assembly on hyaluronic acid-based structures: A review. Carbohydr Polym 150, 139-148.
Chai, Y. W., Lee, E. H., Gubbe, J. D., and Brekke, J. H. (2016). 3D Cell Culture in a Self-Assembled Nanofiber Environment. PLoS One 11, e0162853.
Chatzinikolaidou, M. (2016). Cell spheroids: the new frontiers in in vitro models for cancer drug validation. Drug Discov Today 21, 1553-1560.
Chen, C. S. (2016). 3D Biomimetic Cultures: The Next Platform for Cell Biology. Trends Cell Biol.
Chingwaru, W., Glashoff, R. H., Vidmar, J., Kapewangolo, P., and Sampson, S. L. (2016). Mammalian cell cultures as models for Mycobacterium tuberculosis-human immunodeficiency virus (HIV) interaction studies: A review. Asian Pac J Trop Med 9, 832-838.
Choi, J., Iich, E., and Lee, J. H. (2016). Organogenesis of adult lung in a dish: Differentiation, disease and therapy. Dev Biol.
Colacino, J. A. (2016). 3D human tissue culture: modeling environmental effects on the stem cell epigenome. Epigenomics.
Fong, E. L., Harrington, D. A., Farach-Carson, M. C., and Yu, H. (2016). Heralding a new paradigm in 3D tumor modeling. Biomaterials 108, 197-213.
Funk, C., and Roth, A. (2016). Current limitations and future opportunities for prediction of DILI from in vitro. Arch Toxicol.
Heidari Kani, M., Chan, E. C., Young, R. C., Butler, T., Smith, R., and Paul, J. W. (2016). 3D Cell Culturing and Possibilities for Myometrial Tissue Engineering. Ann Biomed Eng.
Hogrebe, N. J., Reinhardt, J. W., and Gooch, K. J. (2016). Biomaterial microarchitecture: A potent regulator of individual cell behavior and multicellular organization. J Biomed Mater Res A.
Horvath, P., Aulner, N., Bickle, M., Davies, A. M., Nery, E. D., Ebner, D., Montoya, M. C., Ostling, P., Pietiainen, V., Price, L. S., et al. (2016). Screening out irrelevant cell-based models of disease. Nat Rev Drug Discov.
Irvine, S. A., and Venkatraman, S. S. (2016). Bioprinting and Differentiation of Stem Cells. Molecules 21.
Ivanov, D. P., Coyle, B., Walker, D. A., and Grabowska, A. M. (2016). In vitro models of medulloblastoma: Choosing the right tool for the job. J Biotechnol 236, 10-25.
Jung, J. P., Bhuiyan, D. B., and Ogle, B. M. (2016). Solid organ fabrication: comparison of decellularization to 3D bioprinting. Biomater Res 20, 27.
Kaisar, M. A., Sajja, R. K., Prasad, S., Abhyankar, V. V., Liles, T., and Cucullo, L. (2016). New experimental models of the blood-brain barrier for CNS drug discovery. Expert Opin Drug Discov.
Laschke, M. W., and Menger, M. D. (2016). Life is 3D: Boosting Spheroid Function for Tissue Engineering. Trends Biotechnol.
Lauschke, V. M., Hendriks, D. F., Bell, C. C., Andersson, T. B., and Ingelman-Sundberg, M. (2016). Novel 3D Culture Systems for Studies of Human Liver Function and Assessments of the Hepatotoxicity of Drugs and Drug Candidates. Chem Res Toxicol.
Li, X. (2016). In vitro toxicity testing of cigarette smoke based on the air-liquid interface exposure: A review. Toxicol In Vitro 36, 105-113.
Lovitt, C. J., Shelper, T. B., and Avery, V. M. (2016). Cancer drug discovery: recent innovative approaches to tumor modeling. Expert Opin Drug Discov 11, 885-894.
Muffat, J., Li, Y., and Jaenisch, R. (2016). CNS disease models with human pluripotent stem cells in the CRISPR age. Curr Opin Cell Biol 43, 96-103.
Nyga, A., Neves, J., Stamati, K., Loizidou, M., Emberton, M., and Cheema, U. (2016). The next level of 3D tumour models: immunocompetence. Drug Discov Today 21, 1421-1428.
Picollet-D'hahan, N., Dolega, M. E., Liguori, L., Marquette, C., Le Gac, S., Gidrol, X., and Martin, D. K. (2016). A 3D Toolbox to Enhance Physiological Relevance of Human Tissue Models. Trends Biotechnol 34, 757-769.
Ravi, M., Ramesh, A., and Pattabhi, A. (2016). Contributions of 3D Cell Cultures For Cancer Research. J Cell Physiol.
Ryan, A. J., Brougham, C. M., Garciarena, C. D., Kerrigan, S. W., and O'Brien, F. J. (2016). Towards 3D in vitro models for the study of cardiovascular tissues and disease. Drug Discov Today 21, 1437-1445.
Tanimizu, N., and Mitaka, T. (2016). Morphogenesis of liver epithelial cells. Hepatol Res 46, 964-976.
Teixeira, F. G., Vasconcelos, N. L., Gomes, E. D., Marques, F., Sousa, J. C., Sousa, N., Silva, N. A., Assuncao-Silva, R., Lima, R., and Salgado, A. J. (2016). Bioengineered cell culture systems of central nervous system injury and disease. Drug Discov Today 21, 1456-1463.
Wang, P. Y., Thissen, H., and Kingshott, P. (2016). Modulation of human multipotent and pluripotent stem cells using surface nanotopographies and surface-immobilised bioactive signals: A review. Acta Biomater.
Zeilinger, K., Freyer, N., Damm, G., Seehofer, D., and Knospel, F. (2016). Cell sources for in vitro human liver cell culture models. Exp Biol Med (Maywood) 241, 1684-1698.
Spheroids
Adams, C. F., Dickson, A. W., Kuiper, J. H., and Chari, D. M. (2016). Nanoengineering neural stem cells on biomimetic substrates using magnetofection technology. Nanoscale 8, 17869-17880.
Akasov, R., Gileva, A., Zaytseva-Zotova, D., Burov, S., Chevalot, I., Guedon, E., and Markvicheva, E. (2016). 3D in vitro co-culture models based on normal cells and tumor spheroids formed by cyclic RGD-peptide induced cell self-assembly. Biotechnol Lett.
Amaral, A. J., and Pasparakis, G. (2016). Rapid Formation of Cell Aggregates and Spheroids Induced by a "Smart" Boronic Acid Copolymer. ACS Appl Mater Interfaces 8, 22930-22941.
Arai, K., Eguchi, T., Rahman, M. M., Sakamoto, R., Masuda, N., Nakatsura, T., Calderwood, S. K., Kozaki, K., and Itoh, M. (2016). A Novel High-Throughput 3D Screening System for EMT Inhibitors: A Pilot Screening Discovered the EMT Inhibitory Activity of CDK2 Inhibitor SU9516. PLoS One 11, e0162394.
Arevalos, C. A., Berg, J. M., Nguyen, J. M., Godfrey, E. L., Iriondo, C., and Grande-Allen, K. J. (2016). Valve Interstitial Cells Act in a Pericyte Manner Promoting Angiogensis and Invasion by Valve Endothelial Cells. Ann Biomed Eng 44, 2707-2723.
Backer, A., Erhardt, O., Wietbrock, L., Schel, N., Goppert, B., Abaffy, P., Sollich, T., Cecilia, A., and Gruhl, F. J. (2016). Silk scaffolds connected with different naturally occurring biomaterials for prostate cancer cell cultivation in 3D. Biopolymers.
Bhatia, M., Lovitt, C. J., Raninga, P. V., Avery, V. M., Di Trapani, G., and Tonissen, K. F. (2016). Expression of the thioredoxin system in an in vivo-like cancer cell environment upon auranofin treatment. Eur J Cell Biol 95, 378-388.
Boehme, K. A., Nitsch, J., Riester, R., Handgretinger, R., Schleicher, S. B., Kluba, T., and Traub, F. (2016). Arsenic trioxide potentiates the effectiveness of etoposide in Ewing sarcomas. Int J Oncol.
Carvalho, M. P., Costa, E. C., Miguel, S. P., and Correia, I. J. (2016). Tumor spheroid assembly on hyaluronic acid-based structures: A review. Carbohydr Polym 150, 139-148.
Chatzinikolaidou, M. (2016). Cell spheroids: the new frontiers in in vitro models for cancer drug validation. Drug Discov Today 21, 1553-1560.
Chimenti, I., Pagano, F., Angelini, F., Siciliano, C., Mangino, G., Picchio, V., De Falco, E., Peruzzi, M., Carnevale, R., Ibrahim, M., et al. (2016). Human Lung Spheroids as In Vitro Niches of Lung Progenitor Cells With Distinctive Paracrine and Plasticity Properties. Stem Cells Transl Med.
Chitrangi, S., Nair, P., and Khanna, A. (2016). 3D engineered In vitrohepatospheroids for studying drug toxicity and metabolism. Toxicol In Vitro.
Colacino, J. A. (2016). 3D human tissue culture: modeling environmental effects on the stem cell epigenome. Epigenomics.
Dubiak-Szepietowska, M., Karczmarczyk, A., Winckler, T., and Feller, K. H. (2016). A cell-based biosensor for nanomaterials cytotoxicity assessment in three dimensional cell culture. Toxicology 370, 60-69.
Eder, T., Weber, A., Neuwirt, H., Grunbacher, G., Ploner, C., Klocker, H., Sampson, N., and Eder, I. E. (2016). Cancer-Associated Fibroblasts Modify the Response of Prostate Cancer Cells to Androgen and Anti-Androgens in Three-Dimensional Spheroid Culture. Int J Mol Sci 17.
Gomes, A., Guillaume, L., Grimes, D. R., Fehrenbach, J., Lobjois, V., and Ducommun, B. (2016). Oxygen Partial Pressure Is a Rate-Limiting Parameter for Cell Proliferation in 3D Spheroids Grown in Physioxic Culture Condition. PLoS One 11, e0161239.
Gomez-Roman, N., Stevenson, K., Gilmour, L., Hamilton, G., and Chalmers, A. J. (2016). A novel 3D human glioblastoma cell culture system for modeling drug and radiation responses. Neuro Oncol.
Gurusinghe, S., Hilbert, B., Trope, G., Wang, L., Bandara, N., and Strappe, P. (2016). Generation of Immortalised Equine Chondrocytes With Inducible Sox9 Expression Allows Control of Hypertrophic Differentiation. J Cell Biochem.
Higuchi, Y., Kawai, K., Kanaki, T., Yamazaki, H., Chesne, C., Guguen-Guillouzo, C., and Suemizu, H. (2016). Functional polymer-dependent 3D culture accelerates the differentiation of HepaRG cells into mature hepatocytes. Hepatol Res 46, 1045-1057.
Ishiguro, S., Cai, S., Uppalapati, D., Turner, K., Zhang, T., Forrest, W. C., Forrest, M. L., and Tamura, M. (2016). Intratracheal Administration of Hyaluronan-Cisplatin Conjugate Nanoparticles Significantly Attenuates Lung Cancer Growth in Mice. Pharm Res 33, 2517-2529.
Jenkins, J., Borisov, S. M., Papkovsky, D. B., and Dmitriev, R. I. (2016). Sulforhodamine nanothermometer for multi-parametric FLIM imaging. Anal Chem.
Jeong, Y. G., Lee, J. S., Shim, J. K., and Hur, W. (2016). A scaffold-free surface culture of B16F10 murine melanoma cells based on magnetic levitation. Cytotechnology.
Kaufman, G., Nunes, L., Eftimiades, A., and Tutak, W. (2016). Enhancing the Three-Dimensional Structure of Adherent Gingival Fibroblasts and Spheroids via a Fibrous Protein-Based Hydrogel Cover. Cells Tissues Organs.
Kim, B. C., Jun, S. M., Kim, S. Y., Kwon, Y. D., Choe, S. C., Kim, E. C., Lee, J. H., Kim, J., Suh, J. F., and Hwang, Y. S. (2016). Engineering three dimensional micro nerve tissue using postnatal stem cells from human dental apical papilla. Biotechnol Bioeng.
Koumarianou, P., Gomez-Lopez, G., and Santisteban, P. (2016). Pax8 controls thyroid follicular polarity through Cadherin-16. J Cell Sci.
Laschke, M. W., and Menger, M. D. (2016). Life is 3D: Boosting Spheroid Function for Tissue Engineering. Trends Biotechnol.
Lauschke, V. M., Hendriks, D. F., Bell, C. C., Andersson, T. B., and Ingelman-Sundberg, M. (2016). Novel 3D Culture Systems for Studies of Human Liver Function and Assessments of the Hepatotoxicity of Drugs and Drug Candidates. Chem Res Toxicol.
Lee, G. H., Park, Y. E., Cho, M., Park, H., and Park, J. Y. (2016a). Magnetic force-assisted self-locking metallic bead array for fabrication of diverse concave microwell geometries. Lab Chip 16, 3565-3575.
Lee, H. K., Velazquez Sanchez, C., Chen, M., Morin, P. J., Wells, J. M., Hanlon, E. B., and Xia, W. (2016b). Three Dimensional Human Neuro-Spheroid Model of Alzheimer's Disease Based on Differentiated Induced Pluripotent Stem Cells. PLoS One 11, e0163072.
Marcatili, S., Pichard, A., Courteau, A., Ladjohounlou, R., Navarro-Teulon, I., Repetto-Llamazares, A., Heyerdahl, H., Dahle, J., Pouget, J. P., and Bardies, M. (2016). Realistic multi-cellular dosimetry for 177Lu-labelled antibodies: model and application. Phys Med Biol 61, 6935-6952.
Matte, I., Legault, C. M., Garde-Granger, P., Laplante, C., Bessette, P., Rancourt, C., and Piche, A. (2016). Mesothelial cells interact with tumor cells for the formation of ovarian cancer multicellular spheroids in peritoneal effusions. Clin Exp Metastasis.
McMillan, K. S., Boyd, M., and Zagnoni, M. (2016). Transitioning from multi-phase to single-phase microfluidics for long-term culture and treatment of multicellular spheroids. Lab Chip 16, 3548-3557.
Muoth, C., Wichser, A., Monopoli, M., Correia, M., Ehrlich, N., Loeschner, K., Gallud, A., Kucki, M., Diener, L., Manser, P., et al. (2016). A 3D co-culture microtissue model of the human placenta for nanotoxicity assessment. Nanoscale 8, 17322-17332.
Nguyen, P. H., Giraud, J., Staedel, C., Chambonnier, L., Dubus, P., Chevret, E., Boeuf, H., Gauthereau, X., Rousseau, B., Fevre, M., et al. (2016). All-trans retinoic acid targets gastric cancer stem cells and inhibits patient-derived gastric carcinoma tumor growth. Oncogene 35, 5619-5628.
Nyga, A., Neves, J., Stamati, K., Loizidou, M., Emberton, M., and Cheema, U. (2016). The next level of 3D tumour models: immunocompetence. Drug Discov Today 21, 1421-1428.
Pettinato, G., Ramanathan, R., Fisher, R. A., Mangino, M. J., Zhang, N., and Wen, X. (2016). Scalable Differentiation of Human iPSCs in a Multicellular Spheroid-based 3D Culture into Hepatocyte-like Cells through Direct Wnt/beta-catenin Pathway Inhibition. Sci Rep 6, 32888.
Priwitaningrum, D. L., Blonde, J. G., Sridhar, A., van Baarlen, J., Hennink, W. E., Storm, G., Le Gac, S., and Prakash, J. (2016). Tumor stroma-containing 3D spheroid arrays: A tool to study nanoparticle penetration. J Control Release.
Qin, Y., Roszik, J., Chattopadhyay, C., Hashimoto, Y., Liu, C., Cooper, Z. A., Wargo, J. A., Hwu, P., Ekmekcioglu, S., and Grimm, E. A. (2016). Hypoxia-Driven Mechanism of Vemurafenib Resistance in Melanoma. Mol Cancer Ther 15, 2442-2454.
Roudsari, L. C., Jeffs, S. E., Witt, A. S., Gill, B. J., and West, J. L. (2016). A 3D Poly(ethylene glycol)-based Tumor Angiogenesis Model to Study the Influence of Vascular Cells on Lung Tumor Cell Behavior. Sci Rep 6, 32726.
Saleh, F., Carstairs, A., Etheridge, S. L., and Genever, P. (2016). Real-Time Analysis of Endogenous Wnt Signalling in 3D Mesenchymal Stromal Cells. Stem Cells Int 2016, 7132529.
Shin, H. S., Kook, Y. M., Hong, H. J., Kim, Y. M., Koh, W. G., and Lim, J. Y. (2016). Functional spheroid organization of human salivary gland cells cultured on hydrogel-micropatterned nanofibrous microwells. Acta Biomater.
Simao, D., Terrasso, A. P., Teixeira, A. P., Brito, C., Sonnewald, U., and Alves, P. M. (2016). Functional metabolic interactions of human neuron-astrocyte 3D in vitro networks. Sci Rep 6, 33285.
Sirenko, O., Hancock, M. K., Hesley, J., Hong, D., Cohen, A., Gentry, J., Carlson, C. B., and Mann, D. A. (2016). Phenotypic Characterization of Toxic Compound Effects on Liver Spheroids Derived from iPSC Using Confocal Imaging and Three-Dimensional Image Analysis. Assay Drug Dev Technol 14, 381-394.
Ushijima, H., Horyozaki, A., and Maeda, M. (2016). Anisomycin-induced GATA-6 degradation accompanying a decrease of proliferation of colorectal cancer cell. Biochem Biophys Res Commun 478, 481-485.
Waisbourd-Zinman, O., Koh, H., Tsai, S., Lavrut, P. M., Dang, C., Zhao, X., Pack, M., Cave, J., Hawes, M., Koo, K. A., et al. (2016). The toxin biliatresone causes mouse extrahepatic cholangiocyte damage and fibrosis through decreased glutathione and SOX17. Hepatology 64, 880-893.
Wang, M., Nagle, R. B., Knudsen, B. S., Rogers, G. C., and Cress, A. E. (2016a). A basal cell defect promotes budding of prostatic intraepithelial neoplasia. J Cell Sci.
Wang, X., Cheng, F., Liu, J., Smatt, J. H., Gepperth, D., Lastusaari, M., Xu, C., and Hupa, L. (2016b). Biocomposites of copper-containing mesoporous bioactive glass and nanofibrillated cellulose: Biocompatibility and angiogenic promotion in chronic wound healing application. Acta Biomater.
Ware, M. J., Keshishian, V., Law, J. J., Ho, J. C., Favela, C. A., Rees, P., Smith, B., Mohammad, S., Hwang, R. F., Rajapakshe, K., et al. (2016). Generation of an in vitro 3D PDAC stroma rich spheroid model. Biomaterials 108, 129-142.
Yue, X., Lukowski, J. K., Weaver, E. M., Skube, S. B., and Hummon, A. B. (2016). Quantitative Proteomic and Phosphoproteomic Comparison of 2D and 3D Colon Cancer Cell Culture Models. J Proteome Res.
Zhang, W., Li, C., Baguley, B. C., Zhou, F., Zhou, W., Shaw, J. P., Wang, Z., Wu, Z., and Liu, J. (2016). Optimization of the formation of embedded multicellular spheroids of MCF-7 cells: How to reliably produce a biomimetic 3D model. Anal Biochem.
Organoid
Alexander, P. G., Clark, K. L., and Tuan, R. S. (2016). Prenatal exposure to environmental factors and congenital limb defects. Birth Defects Res C Embryo Today.
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Broutier, L., Andersson-Rolf, A., Hindley, C. J., Boj, S. F., Clevers, H., Koo, B. K., and Huch, M. (2016). Culture and establishment of self-renewing human and mouse adult liver and pancreas 3D organoids and their genetic manipulation. Nat Protoc 11, 1724-1743.
Chen, H. Y., Kaya, K. D., Dong, L., and Swaroop, A. (2016). Three-dimensional retinal organoids from mouse pluripotent stem cells mimic in vivo development with enhanced stratification and rod photoreceptor differentiation. Mol Vis 22, 1077-1094.
Chingwaru, W., Glashoff, R. H., Vidmar, J., Kapewangolo, P., and Sampson, S. L. (2016). Mammalian cell cultures as models for Mycobacterium tuberculosis-human immunodeficiency virus (HIV) interaction studies: A review. Asian Pac J Trop Med 9, 832-838.
Choi, J., Iich, E., and Lee, J. H. (2016). Organogenesis of adult lung in a dish: Differentiation, disease and therapy. Dev Biol.
Colacino, J. A. (2016). 3D human tissue culture: modeling environmental effects on the stem cell epigenome. Epigenomics.
Cudre-Cung, H. P., Zavadakova, P., do Vale-Pereira, S., Remacle, N., Henry, H., Ivanisevic, J., Tavel, D., Braissant, O., and Ballhausen, D. (2016). Ammonium accumulation is a primary effect of 2-methylcitrate exposure in an in vitro model for brain damage in methylmalonic aciduria. Mol Genet Metab 119, 57-67.
DeJonge, R. E., Liu, X. P., Deig, C. R., Heller, S., Koehler, K. R., and Hashino, E. (2016). Modulation of Wnt Signaling Enhances Inner Ear Organoid Development in 3D Culture. PLoS One 11, e0162508.
Diermeier, S. D., Chang, K. C., Freier, S. M., Song, J., El Demerdash, O., Krasnitz, A., Rigo, F., Bennett, C. F., and Spector, D. L. (2016). Mammary Tumor-Associated RNAs Impact Tumor Cell Proliferation, Invasion, and Migration. Cell Rep 17, 261-274.
Dong, W., Lu, A., Zhao, J., Yin, S., Ou, B., and Feng, H. (2016). An efficient and simple co-culture method for isolating primary human hepatic cells: Potential application for tumor microenvironment research. Oncol Rep 36, 2126-2134.
Flanagan, D. J., Schwab, R. H., Tran, B. M., Phesse, T. J., and Vincan, E. (2016). Isolation and Culture of Adult Intestinal, Gastric, and Liver Organoids for Cre-recombinase-Mediated Gene Deletion. Methods Mol Biol.
Ghanavati, Z., Orazizadeh, M., Bayati, V., Abbaspour, M. R., Khorsandi, L., Mansouri, E., and Neisi, N. (2016). Characterization of A Three-Dimensional Organotypic Co-Culture Skin Model for Epidermal Differentiation of Rat Adipose-Derived Stem Cells. Cell J 18, 289-301.
Hibiya, S., Tsuchiya, K., Hayashi, R., Fukushima, K., Horita, N., Watanabe, S., Shirasaki, T., Nishimura, R., Kimura, N., Nishimura, T., et al. (2016). Long-term inflammation transforms intestinal epithelial cells of colonic organoids. J Crohns Colitis.
Jarde, T., Lloyd-Lewis, B., Thomas, M., Kendrick, H., Melchor, L., Bougaret, L., Watson, P. D., Ewan, K., Smalley, M. J., and Dale, T. C. (2016). Wnt and Neuregulin1/ErbB signalling extends 3D culture of hormone responsive mammary organoids. Nat Commun 7, 13207.
Li, Z., Araoka, T., Wu, J., Liao, H. K., Li, M., Lazo, M., Zhou, B., Sui, Y., Wu, M. Z., Tamura, I., et al. (2016). 3D Culture Supports Long-Term Expansion of Mouse and Human Nephrogenic Progenitors. Cell Stem Cell 19, 516-529.
Muffat, J., Li, Y., and Jaenisch, R. (2016a). CNS disease models with human pluripotent stem cells in the CRISPR age. Curr Opin Cell Biol 43, 96-103.
Muffat, J., Li, Y., Yuan, B., Mitalipova, M., Omer, A., Corcoran, S., Bakiasi, G., Tsai, L. H., Aubourg, P., Ransohoff, R. M., and Jaenisch, R. (2016b). Efficient derivation of microglia-like cells from human pluripotent stem cells. Nat Med.
Picollet-D'hahan, N., Dolega, M. E., Liguori, L., Marquette, C., Le Gac, S., Gidrol, X., and Martin, D. K. (2016). A 3D Toolbox to Enhance Physiological Relevance of Human Tissue Models. Trends Biotechnol 34, 757-769.
Pierzchalska, M., Panek, M., Czyrnek, M., and Grabacka, M. (2016). The Three-Dimensional Culture of Epithelial Organoids Derived from Embryonic Chicken Intestine. Methods Mol Biol.
Raja, W. K., Mungenast, A. E., Lin, Y. T., Ko, T., Abdurrob, F., Seo, J., and Tsai, L. H. (2016). Self-Organizing 3D Human Neural Tissue Derived from Induced Pluripotent Stem Cells Recapitulate Alzheimer's Disease Phenotypes. PLoS One 11, e0161969.
Su, X., Fang, D., Liu, Y., Ramamoorthi, M., Zeitouni, A., Chen, W., and Tran, S. D. (2016). Three-dimensional organotypic culture of human salivary glands: the slice culture model. Oral Dis 22, 639-648.
Takasato, M., Er, P. X., Chiu, H. S., and Little, M. H. (2016). Generation of kidney organoids from human pluripotent stem cells. Nat Protoc 11, 1681-1692.
Tanimizu, N., and Mitaka, T. (2016). Morphogenesis of liver epithelial cells. Hepatol Res 46, 964-976.
Zhao, J., Zeng, Z., Sun, J., Zhang, Y., Li, D., Zhang, X., Liu, M., and Wang, X. (2016). A Novel Model of P-Glycoprotein Inhibitor Screening Using Human Small Intestinal Organoids. Basic Clin Pharmacol Toxicol.
Scaffold
Arai, K., Eguchi, T., Rahman, M. M., Sakamoto, R., Masuda, N., Nakatsura, T., Calderwood, S. K., Kozaki, K., and Itoh, M. (2016a). A Novel High-Throughput 3D Screening System for EMT Inhibitors: A Pilot Screening Discovered the EMT Inhibitory Activity of CDK2 Inhibitor SU9516. PLoS One 11, e0162394.
Arai, K., Yoshida, T., Okabe, M., Goto, M., Mir, T. A., Soko, C., Tsukamoto, Y., Akaike, T., Nikaido, T., Zhou, K., and Nakamura, M. (2016b). Fabrication of 3D-culture platform with sandwich architecture for preserving liver-specific functions of hepatocytes using 3D bioprinter. J Biomed Mater Res A.
Ardjomandi, N., Huth, J., Stamov, D. R., Henrich, A., Klein, C., Wendel, H. P., Reinert, S., and Alexander, D. (2016). Surface biofunctionalization of beta-TCP blocks using aptamer 74 for bone tissue engineering. Mater Sci Eng C Mater Biol Appl 67, 267-275.
Arya, A. D., Hallur, P. M., Karkisaval, A. G., Gudipati, A., Rajendiran, S., Dhavale, V., Ramachandran, B., Jayaprakash, A., Gundiah, N., and Chaubey, A. (2016). Gelatin Methacrylate Hydrogels as Biomimetic Three-Dimensional Matrixes for Modeling Breast Cancer Invasion and Chemoresponse in Vitro. ACS Appl Mater Interfaces 8, 22005-22017.
Backer, A., Erhardt, O., Wietbrock, L., Schel, N., Goppert, B., Abaffy, P., Sollich, T., Cecilia, A., and Gruhl, F. J. (2016). Silk scaffolds connected with different naturally occurring biomaterials for prostate cancer cell cultivation in 3D. Biopolymers.
Bradley, R. S., Robinson, I. K., and Yusuf, M. (2016). 3D X-Ray Nanotomography of Cells Grown on Electrospun Scaffolds. Macromol Biosci.
Celik, E., Bayram, C., Akcapinar, R., Turk, M., and Denkbas, E. B. (2016). The effect of calcium chloride concentration on alginate/Fmoc-diphenylalanine hydrogel networks. Mater Sci Eng C Mater Biol Appl 66, 221-229.
Chen, C., Mehl, B. T., Sell, S. A., and Martin, R. S. (2016). Use of electrospinning and dynamic air focusing to create three-dimensional cell culture scaffolds in microfluidic devices. Analyst 141, 5311-5320.
Chitrangi, S., Nair, P., and Khanna, A. (2016). 3D engineered In vitrohepatospheroids for studying drug toxicity and metabolism. Toxicol In Vitro.
Galli, C., Parisi, L., Piergianni, M., Smerieri, A., Passeri, G., Guizzardi, S., Costa, F., Lumetti, S., Manfredi, E., and Macaluso, G. M. (2016). Improved scaffold biocompatibility through anti-Fibronectin aptamer functionalization. Acta Biomater 42, 147-156.
Galuppo, A. G., Chagastelles, P. C., Gamba, D., Iglesias, D. B., Sperling, L., Machado, J., Wendorff, J., Petzhold, C. L., and Pranke, P. (2016). Effect of feeder free poly(lactide-co-glycolide) scaffolds on morphology, proliferation and pluripotency of mouse embryonic stem cells. J Biomed Mater Res A.
Gomez-Roman, N., Stevenson, K., Gilmour, L., Hamilton, G., and Chalmers, A. J. (2016). A novel 3D human glioblastoma cell culture system for modeling drug and radiation responses. Neuro Oncol.
Gorgun, C., Ozturk, S., Gokalp, S., Vatansever, S., Gurhan, S. I., and Urkmez, A. S. (2016). Synergistic role of three dimensional niche and hypoxia on conservation of cancer stem cell phenotype. Int J Biol Macromol 90, 20-26.
Guneta, V., Tan, N. S., Chan, S. K., Tanavde, V., Lim, T. C., Wong, T. C., and Choong, C. (2016). Comparative study of adipose-derived stem cells and bone marrow-derived stem cells in similar microenvironmental conditions. Exp Cell Res.
Han, H. W., and Hsu, S. H. (2016). Chitosan-hyaluronan based 3D co-culture platform for studying the crosstalk of lung cancer cells and mesenchymal stem cells. Acta Biomater 42, 157-167.
Hof, A., Raschke, S., Baier, K., Nehrenheim, L., Selig, J. I., Schomaker, M., Lichtenberg, A., Meyer, H., and Akhyari, P. (2016). Challenges in developing a reseeded, tissue-engineered aortic valve prosthesis. Eur J Cardiothorac Surg 50, 446-455.
Hogrebe, N. J., Reinhardt, J. W., and Gooch, K. J. (2016). Biomaterial microarchitecture: A potent regulator of individual cell behavior and multicellular organization. J Biomed Mater Res A.
Irvine, S. A., and Venkatraman, S. S. (2016). Bioprinting and Differentiation of Stem Cells. Molecules 21.
Jakob, P. H., Kehrer, J., Flood, P., Wiegel, C., Haselmann, U., Meissner, M., Stelzer, E. H., and Reynaud, E. G. (2016). A 3-D cell culture system to study epithelia functions using microcarriers. Cytotechnology 68, 1813-1825.
Jeong, Y. G., Lee, J. S., Shim, J. K., and Hur, W. (2016). A scaffold-free surface culture of B16F10 murine melanoma cells based on magnetic levitation. Cytotechnology.
Jiang, Z., Song, Q., Tang, M., Yang, L., Cheng, Y., Zhang, M., Xu, D., and Cheng, G. (2016). Enhanced Migration of Neural Stem Cells by Microglia Grown on a Three-Dimensional Graphene Scaffold. ACS Appl Mater Interfaces 8, 25069-25077.
Laschke, M. W., and Menger, M. D. (2016). Life is 3D: Boosting Spheroid Function for Tissue Engineering. Trends Biotechnol.
Leong, M. F., Lu, H. F., Lim, T. C., Du, C., Ma, N. K., and Wan, A. C. (2016). Electrospun polystyrene scaffolds as a synthetic substrate for xeno-free expansion and differentiation of human induced pluripotent stem cells. Acta Biomater.
Liu, J., Cheng, F., Grenman, H., Spoljaric, S., Seppala, J., J, E. E., Willfor, S., and Xu, C. (2016). Development of nanocellulose scaffolds with tunable structures to support 3D cell culture. Carbohydr Polym 148, 259-271.
Long, T. J., Cosgrove, P. A., Dunn, R. T., Stolz, D. B., Hamadeh, H. K., Afshari, C., McBride, H., and Griffith, L. G. (2016). Modeling therapeutic antibody-small molecule drug-drug interactions using a 3D perfusable human liver co-culture platform. Drug Metab Dispos.
McMillan, K. S., Boyd, M., and Zagnoni, M. (2016). Transitioning from multi-phase to single-phase microfluidics for long-term culture and treatment of multicellular spheroids. Lab Chip 16, 3548-3557.
Mohiti-Asli, M., Molina, C., Diteepeng, T., Pourdeyhimi, B., and Loboa, E. (2016). Evaluation of Silver Ion Releasing Scaffolds in a 3D Co-culture System of MRSA and Human Adipose Derived Stem Cells for Their Potential Use in Treatment or Prevention of Osteomyelitis. Tissue Eng Part A.
Muoth, C., Wichser, A., Monopoli, M., Correia, M., Ehrlich, N., Loeschner, K., Gallud, A., Kucki, M., Diener, L., Manser, P., et al. (2016). A 3D co-culture microtissue model of the human placenta for nanotoxicity assessment. Nanoscale 8, 17322-17332.
Ouyang, L., Yao, R., Zhao, Y., and Sun, W. (2016). Effect of bioink properties on printability and cell viability for 3D bioplotting of embryonic stem cells. Biofabrication 8, 035020.
Pang, Y., Horimoto, Y., Sutoko, S., Montagne, K., Shinohara, M., Mathiue, D., Komori, K., Anzai, M., Niino, T., and Sakai, Y. (2016). Novel integrative methodology for engineering large liver tissue equivalents based on three-dimensional scaffold fabrication and cellular aggregate assembly. Biofabrication 8, 035016.
Patel, N. M., Yazdi, I. K., Tasciotti, E., and Birla, R. K. (2016). Optimizing cell seeding and retention in a three-dimensional bioengineered cardiac ventricle: The two-stage cellularization model. Biotechnol Bioeng 113, 2275-2285.
Pradhan, S., Hassani, I., Seeto, W. J., and Lipke, E. A. (2016). PEG-fibrinogen Hydrogels for Three-dimensional Breast Cancer Cell Culture. J Biomed Mater Res A.
Punia, K., Bucaro, M., Mancuso, A., Cuttitta, C., Marsillo, A., Bykov, A., L'Amoreaux, W., and Raja, K. S. (2016). Rediscovering Chemical Gardens: Self-Assembling Cytocompatible Protein-Intercalated Silicate-Phosphate Sponge-Mimetic Tubules. Langmuir 32, 8748-8758.
Ruminski, S., Ostrowska, B., Jaroszewicz, J., Skirecki, T., Wlodarski, K., Swieszkowski, W., and Lewandowska-Szumiel, M. (2016). 3D printed PCL-based scaffolds provide an advantageous environment for osteogenic differentiation of human adipose-derived stem cells. J Tissue Eng Regen Med.
Severn, C. E., Macedo, H., Eagle, M. J., Rooney, P., Mantalaris, A., and Toye, A. M. (2016). Polyurethane scaffolds seeded with CD34(+) cells maintain early stem cells whilst also facilitating prolonged egress of haematopoietic progenitors. Sci Rep 6, 32149.
Shi, W., Huang, C. J., Xu, X. D., Jin, G. H., Huang, R. Q., Huang, J. F., Chen, Y. N., Ju, S. Q., Wang, Y., Shi, Y. W., et al. (2016). Transplantation of RADA16-BDNF peptide scaffold with human umbilical cord mesenchymal stem cells forced with CXCR4 and activated astrocytes for repair of traumatic brain injury. Acta Biomater.
Shin, H. S., Kook, Y. M., Hong, H. J., Kim, Y. M., Koh, W. G., and Lim, J. Y. (2016). Functional spheroid organization of human salivary gland cells cultured on hydrogel-micropatterned nanofibrous microwells. Acta Biomater.
Silva, A. C., Rodrigues, S. C., Caldeira, J., Nunes, A. M., Sampaio-Pinto, V., Resende, T. P., Oliveira, M. J., Barbosa, M. A., Thorsteinsdottir, S., Nascimento, D. S., and Pinto-do, O. P. (2016). Three-dimensional scaffolds of fetal decellularized hearts exhibit enhanced potential to support cardiac cells in comparison to the adult. Biomaterials 104, 52-64.
Soffer-Tsur, N., Peer, D., and Dvir, T. (2016). ECM-based macroporous sponges release essential factors to support the growth of hematopoietic cells. J Control Release.
Sun, M., Liu, A., Shao, H., Yang, X., Ma, C., Yan, S., Liu, Y., He, Y., and Gou, Z. (2016). Systematical Evaluation of Mechanically Strong 3D Printed Diluted magnesium Doping Wollastonite Scaffolds on Osteogenic Capacity in Rabbit Calvarial Defects. Sci Rep 6, 34029.
Wang, B., Jakus, A. E., Baptista, P. M., Soker, S., Soto-Gutierrez, A., Abecassis, M. M., Shah, R. N., and Wertheim, J. A. (2016). Functional Maturation of Induced Pluripotent Stem Cell Hepatocytes in Extracellular Matrix-A Comparative Analysis of Bioartificial Liver Microenvironments. Stem Cells Transl Med 5, 1257-1267.
Westphal, I., Jedelhauser, C., Liebsch, G., Wilhelmi, A., Aszodi, A., and Schieker, M. (2016). Oxygen mapping: Probing a novel seeding strategy for bone tissue engineering. Biotechnol Bioeng.
Xinguo, Y., Li, S., Chen, X., Zhan, Y., and Li, X. (2016). Polyethylenimine/silk fibroin multilayers deposited nanofibrics for cell culture. Int J Biol Macromol.
Zhang, H., Siegel, C. T., Li, J., Lai, J., Shuai, L., Lai, X., Zhang, Y., Jiang, Y., Bie, P., and Bai, L. (2016). Functional liver tissue engineering by an adult mouse liver-derived neuro-glia antigen 2-expressing stem/progenitor population. J Tissue Eng Regen Med.
Hydrogel
Abbadessa, A., Blokzijl, M. M., Mouser, V. H., Marica, P., Malda, J., Hennink, W. E., and Vermonden, T. (2016). A thermo-responsive and photo-polymerizable chondroitin sulfate-based hydrogel for 3D printing applications. Carbohydr Polym 149, 163-174.
Allen, E. L., Ulanet, D. B., Pirman, D., Mahoney, C. E., Coco, J., Si, Y., Chen, Y., Huang, L., Ren, J., Choe, S., et al. (2016). Differential Aspartate Usage Identifies a Subset of Cancer Cells Particularly Dependent on OGDH. Cell Rep 17, 876-890.
Arjmand, F., Khanmohammadi, M., Arasteh, S., Mohammadzadeh, A., Kazemnejad, S., and Akhondi, M. M. (2016). Extended Culture of Encapsulated Human Blastocysts in Alginate Hydrogel Containing Decidualized Endometrial Stromal Cells in the Presence of Melatonin. Mol Biotechnol 58, 684-694.
Booij, T. H., Klop, M. J., Yan, K., Szantai-Kis, C., Szokol, B., Orfi, L., van de Water, B., Keri, G., and Price, L. S. (2016). Development of a 3D Tissue Culture-Based High-Content Screening Platform That Uses Phenotypic Profiling to Discriminate Selective Inhibitors of Receptor Tyrosine Kinases. J Biomol Screen 21, 912-922.
Borg, D. J., Welzel, P. B., Grimmer, M., Friedrichs, J., Weigelt, M., Wilhelm, C., Prewitz, M., Stissel, A., Hommel, A., Kurth, T., et al. (2016). Macroporous biohybrid cryogels for co-housing pancreatic islets with mesenchymal stromal cells. Acta Biomater 44, 178-187.
Bretschneider, H., Stiehler, M., Hartmann, A., Boger, E., Osswald, C., Mollenhauer, J., Gaissmaier, C., and Gunther, K. P. (2016). Characterization of primary chondrocytes harvested from hips with femoroacetabular impingement. Osteoarthritis Cartilage 24, 1622-1628.
Celik, E., Bayram, C., Akcapinar, R., Turk, M., and Denkbas, E. B. (2016). The effect of calcium chloride concentration on alginate/Fmoc-diphenylalanine hydrogel networks. Mater Sci Eng C Mater Biol Appl 66, 221-229.
Chai, Y. W., Lee, E. H., Gubbe, J. D., and Brekke, J. H. (2016). 3D Cell Culture in a Self-Assembled Nanofiber Environment. PLoS One 11, e0162853.
Colak, B., Da Silva, J. C., Soares, T. A., and Gautrot, J. E. (2016). Impact of the Molecular Environment on Thiol-Ene Coupling For Biofunctionalization and Conjugation. Bioconjug Chem 27, 2111-2123.
Dai, X., Ma, C., Lan, Q., and Xu, T. (2016). 3D bioprinted glioma stem cells for brain tumor model and applications of drug susceptibility. Biofabrication 8, 045005.
Fan, R., Piou, M., Darling, E., Cormier, D., Sun, J., and Wan, J. (2016). Bio-printing cell-laden Matrigel-agarose constructs. J Biomater Appl.
Flood, P., Alvarez, L., and Reynaud, E. G. (2016). Free-floating epithelial micro-tissue arrays: a low cost and versatile technique. Biofabrication 8, 045006.
Galli, C., Parisi, L., Piergianni, M., Smerieri, A., Passeri, G., Guizzardi, S., Costa, F., Lumetti, S., Manfredi, E., and Macaluso, G. M. (2016). Improved scaffold biocompatibility through anti-Fibronectin aptamer functionalization. Acta Biomater 42, 147-156.
Hao, Y., Zerdoum, A. B., Stuffer, A. J., Rajasekaran, A. K., and Jia, X. (2016). Biomimetic Hydrogels Incorporating Polymeric Cell-Adhesive Peptide to Promote the 3D Assembly of Tumoroids. Biomacromolecules.
Hogrebe, N. J., and Gooch, K. J. (2016). Direct influence of culture dimensionality on human Mesenchymal stem cells differentiation at various matrix stiffnesses using a fibrous self-assembling peptide hydrogel. J Biomed Mater Res A 104, 2356-2368.
Jakubikova, J., Cholujova, D., Hideshima, T., Gronesova, P., Soltysova, A., Harada, T., Joo, J., Kong, S. Y., Szalat, R. E., Richardson, P. G., et al. (2016). A novel 3D mesenchymal stem cell model of the multiple myeloma bone marrow niche: biologic and clinical applications. Oncotarget.
Kalisky, J., Raso, J., Rigothier, C., Remy, M., Siadous, R., Bareille, R., Fricain, J. C., Amedee-Vilamitjana, J., Oliveira, H., and Devillard, R. (2016). An easy-to-use and versatile method for building cell-laden microfibres. Sci Rep 6, 33328.
Kamei, K. I., Koyama, Y., Tokunaga, Y., Mashimo, Y., Yoshioka, M., Fockenberg, C., Mosbergen, R., Korn, O., Wells, C., and Chen, Y. (2016). Characterization of Phenotypic and Transcriptional Differences in Human Pluripotent Stem Cells under 2D and 3D Culture Conditions. Adv Healthc Mater.
Kaufman, G., Nunes, L., Eftimiades, A., and Tutak, W. (2016). Enhancing the Three-Dimensional Structure of Adherent Gingival Fibroblasts and Spheroids via a Fibrous Protein-Based Hydrogel Cover. Cells Tissues Organs.
Kim, B. C., Jun, S. M., Kim, S. Y., Kwon, Y. D., Choe, S. C., Kim, E. C., Lee, J. H., Kim, J., Suh, J. F., and Hwang, Y. S. (2016). Engineering three dimensional micro nerve tissue using postnatal stem cells from human dental apical papilla. Biotechnol Bioeng.
Kingsley, D. M., Dias, A. D., and Corr, D. T. (2016). Microcapsules and 3D customizable shelled microenvironments from laser direct-written microbeads. Biotechnol Bioeng 113, 2264-2274.
Kinoshita, K., Iwase, M., Yamada, M., Yajima, Y., and Seki, M. (2016). Fabrication of multilayered vascular tissues using microfluidic agarose hydrogel platforms. Biotechnol J.
Kumar, M., Coburn, J. M., Kaplan, D. L., and Mandal, B. B. (2016). Immuno-informed 3D silk-biomaterials for tailoring biological responses. ACS Appl Mater Interfaces.
Li, S., Liu, Y. Y., Liu, L. J., and Hu, Q. X. (2016a). A Versatile Method for Fabricating Tissue Engineering Scaffolds with a Three-Dimensional Channel for Prevasculature Networks. ACS Appl Mater Interfaces 8, 25096-25103.
Li, Y., Zhang, Y., Shi, F., Tao, L., Wei, Y., and Wang, X. (2016b). Modulus-regulated 3D-cell proliferation in an injectable self-healing hydrogel. Colloids Surf B Biointerfaces 149, 168-173.
Liang, Z., Liu, C., Li, L., Xu, P., Luo, G., Ding, M., and Liang, Q. (2016). Double-Network Hydrogel with Tunable Mechanical Performance and Biocompatibility for the Fabrication of Stem Cells-Encapsulated Fibers and 3D Assemble. Sci Rep 6, 33462.
Liu, J., Cheng, F., Grenman, H., Spoljaric, S., Seppala, J., J, E. E., Willfor, S., and Xu, C. (2016). Development of nanocellulose scaffolds with tunable structures to support 3D cell culture. Carbohydr Polym 148, 259-271.
Marshall, L. E., Koomullil, R., Frost, A. R., and Berry, J. L. (2016). Computational and Experimental Analysis of Fluid Transport Through Three-Dimensional Collagen-Matrigel Hydrogels. Ann Biomed Eng.
McCoy, M. G., Seo, B. R., Choi, S., and Fischbach, C. (2016). Collagen I hydrogel microstructure and composition conjointly regulate vascular network formation. Acta Biomater 44, 200-208.
Morselli, M. G., Canziani, S., Vigo, D., and Luvoni, G. C. (2016). A three-dimensional alginate system for in vitro culture of cumulus-denuded feline oocytes. Reprod Domest Anim.
Neto, A. I., Demir, K., Popova, A. A., Oliveira, M. B., Mano, J. F., and Levkin, P. A. (2016). Fabrication of Hydrogel Particles of Defined Shapes Using Superhydrophobic-Hydrophilic Micropatterns. Adv Mater 28, 7613-7619.
Pradhan, S., Hassani, I., Seeto, W. J., and Lipke, E. A. (2016). PEG-fibrinogen Hydrogels for Three-dimensional Breast Cancer Cell Culture. J Biomed Mater Res A.
Ren, K., Cui, H., Xu, Q., He, C., Li, G., and Chen, X. (2016). Injectable Polypeptide Hydrogels with Tunable Microenvironment for 3D Spreading and Chondrogenic Differentiation of Bone Marrow-derived Mesenchymal Stem Cells. Biomacromolecules.
Roberts, M. A., Kotha, S. S., Phong, K. T., and Zheng, Y. (2016). Micropatterning and Assembly of 3D Microvessels. J Vis Exp.
Roudsari, L. C., Jeffs, S. E., Witt, A. S., Gill, B. J., and West, J. L. (2016). A 3D Poly(ethylene glycol)-based Tumor Angiogenesis Model to Study the Influence of Vascular Cells on Lung Tumor Cell Behavior. Sci Rep 6, 32726.
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Matrix
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Roberts, M. A., Kotha, S. S., Phong, K. T., and Zheng, Y. (2016a). Micropatterning and Assembly of 3D Microvessels. J Vis Exp.
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Samavedi, S., Diaz-Rodriguez, P., Erndt-Marino, J. D., and Hahn, M. (2016). A 3D chondrocyte-macrophage co-culture system to probe inflammation in experimental osteoarthritis. Tissue Eng Part A.
Shelper, T. B., Lovitt, C. J., and Avery, V. M. (2016). Assessing Drug Efficacy in a Miniaturized Pancreatic Cancer In Vitro 3D Cell Culture Model. Assay Drug Dev Technol 14, 367-380.
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Silva, A. C., Rodrigues, S. C., Caldeira, J., Nunes, A. M., Sampaio-Pinto, V., Resende, T. P., Oliveira, M. J., Barbosa, M. A., Thorsteinsdottir, S., Nascimento, D. S., and Pinto-do, O. P. (2016). Three-dimensional scaffolds of fetal decellularized hearts exhibit enhanced potential to support cardiac cells in comparison to the adult. Biomaterials 104, 52-64.
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Su, X., Fang, D., Liu, Y., Ramamoorthi, M., Zeitouni, A., Chen, W., and Tran, S. D. (2016). Three-dimensional organotypic culture of human salivary glands: the slice culture model. Oral Dis 22, 639-648.
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Walker, S., Foster, F., Wood, A., Owens, T., Brennan, K., Streuli, C. H., and Gilmore, A. P. (2016). Oncogenic activation of FAK drives apoptosis suppression in a 3D-culture model of breast cancer initiation. Oncotarget.
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Microfluidics
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Paciello, A., Amalfitano, G., Garziano, A., Urciuolo, F., and Netti, P. A. (2016). Hemoglobin-Conjugated Gelatin Microsphere as a Smart Oxygen Releasing Biomaterial. Adv Healthc Mater.
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Microfabrication
Brandenberg, N., and Lutolf, M. P. (2016). In Situ Patterning of Microfluidic Networks in 3D Cell-Laden Hydrogels. Adv Mater 28, 7450-7456.
Chen, C., Mehl, B. T., Sell, S. A., and Martin, R. S. (2016). Use of electrospinning and dynamic air focusing to create three-dimensional cell culture scaffolds in microfluidic devices. Analyst 141, 5311-5320.
Flood, P., Alvarez, L., and Reynaud, E. G. (2016). Free-floating epithelial micro-tissue arrays: a low cost and versatile technique. Biofabrication 8, 045006.
Jung, J. P., Bhuiyan, D. B., and Ogle, B. M. (2016). Solid organ fabrication: comparison of decellularization to 3D bioprinting. Biomater Res 20, 27.
Kalisky, J., Raso, J., Rigothier, C., Remy, M., Siadous, R., Bareille, R., Fricain, J. C., Amedee-Vilamitjana, J., Oliveira, H., and Devillard, R. (2016). An easy-to-use and versatile method for building cell-laden microfibres. Sci Rep 6, 33328.
Kingsley, D. M., Dias, A. D., and Corr, D. T. (2016). Microcapsules and 3D customizable shelled microenvironments from laser direct-written microbeads. Biotechnol Bioeng 113, 2264-2274.
Kinoshita, K., Iwase, M., Yamada, M., Yajima, Y., and Seki, M. (2016). Fabrication of multilayered vascular tissues using microfluidic agarose hydrogel platforms. Biotechnol J.
Li, S., Liu, Y. Y., Liu, L. J., and Hu, Q. X. (2016). A Versatile Method for Fabricating Tissue Engineering Scaffolds with a Three-Dimensional Channel for Prevasculature Networks. ACS Appl Mater Interfaces 8, 25096-25103.
Neto, A. I., Demir, K., Popova, A. A., Oliveira, M. B., Mano, J. F., and Levkin, P. A. (2016). Fabrication of Hydrogel Particles of Defined Shapes Using Superhydrophobic-Hydrophilic Micropatterns. Adv Mater 28, 7613-7619.
Picollet-D'hahan, N., Dolega, M. E., Liguori, L., Marquette, C., Le Gac, S., Gidrol, X., and Martin, D. K. (2016). A 3D Toolbox to Enhance Physiological Relevance of Human Tissue Models. Trends Biotechnol 34, 757-769.
Roberts, M. A., Kotha, S. S., Phong, K. T., and Zheng, Y. (2016). Micropatterning and Assembly of 3D Microvessels. J Vis Exp.
Wollrab, V., Caballero, D., Thiagarajan, R., and Riveline, D. (2016). Ordering Single Cells and Single Embryos in 3D Confinement: A New Device for High Content Screening. J Vis Exp.
Bone
Ardjomandi, N., Huth, J., Stamov, D. R., Henrich, A., Klein, C., Wendel, H. P., Reinert, S., and Alexander, D. (2016). Surface biofunctionalization of beta-TCP blocks using aptamer 74 for bone tissue engineering. Mater Sci Eng C Mater Biol Appl 67, 267-275.
Bretschneider, H., Stiehler, M., Hartmann, A., Boger, E., Osswald, C., Mollenhauer, J., Gaissmaier, C., and Gunther, K. P. (2016). Characterization of primary chondrocytes harvested from hips with femoroacetabular impingement. Osteoarthritis Cartilage 24, 1622-1628.
Chatzinikolaidou, M., Pontikoglou, C., Terzaki, K., Kaliva, M., Kalyva, A., Papadaki, E., Vamvakaki, M., and Farsari, M. (2016). Recombinant human bone morphogenetic protein 2 (rhBMP-2) immobilized on laser-fabricated 3D scaffolds enhance osteogenesis. Colloids Surf B Biointerfaces 149, 233-242.
Fitzgerald, K. A., Guo, J., Raftery, R. M., Castano, I. M., Curtin, C. M., Gooding, M., Darcy, R., FJ, O. B., and CM, O. D. (2016). Nanoparticle-mediated siRNA delivery assessed in a 3D co-culture model simulating prostate cancer bone metastasis. Int J Pharm 511, 1058-1069.
Guneta, V., Tan, N. S., Chan, S. K., Tanavde, V., Lim, T. C., Wong, T. C., and Choong, C. (2016). Comparative study of adipose-derived stem cells and bone marrow-derived stem cells in similar microenvironmental conditions. Exp Cell Res.
Hoshi, K., Fujihara, Y., Mori, Y., Asawa, Y., Kanazawa, S., Nishizawa, S., Misawa, M., Numano, T., Inoue, H., Sakamoto, T., et al. (2016). Production of three-dimensional tissue-engineered cartilage through mutual fusion of chondrocyte pellets. Int J Oral Maxillofac Surg 45, 1177-1185.
Jakubikova, J., Cholujova, D., Hideshima, T., Gronesova, P., Soltysova, A., Harada, T., Joo, J., Kong, S. Y., Szalat, R. E., Richardson, P. G., et al. (2016). A novel 3D mesenchymal stem cell model of the multiple myeloma bone marrow niche: biologic and clinical applications. Oncotarget.
Kalisky, J., Raso, J., Rigothier, C., Remy, M., Siadous, R., Bareille, R., Fricain, J. C., Amedee-Vilamitjana, J., Oliveira, H., and Devillard, R. (2016). An easy-to-use and versatile method for building cell-laden microfibres. Sci Rep 6, 33328.
Kaur, G., Willsmore, T., Gulati, K., Zinonos, I., Wang, Y., Kurian, M., Hay, S., Losic, D., and Evdokiou, A. (2016). Titanium wire implants with nanotube arrays: A study model for localized cancer treatment. Biomaterials 101, 176-188.
Mohiti-Asli, M., Molina, C., Diteepeng, T., Pourdeyhimi, B., and Loboa, E. (2016). Evaluation of Silver Ion Releasing Scaffolds in a 3D Co-culture System of MRSA and Human Adipose Derived Stem Cells for Their Potential Use in Treatment or Prevention of Osteomyelitis. Tissue Eng Part A.
Pagani, S., Borsari, V., Veronesi, F., Ferrari, A., Cepollaro, S., Torricelli, P., Filardo, G., and Fini, M. (2016). Increased Chondrogenic Potential of Mesenchymal Cells from Adipose Tissue Versus Bone Marrow Derived Cells in Osteoarthritic In Vitro Models. J Cell Physiol.
Panzavolta, S., Torricelli, P., Casolari, S., Parrilli, A., Amadori, S., Fini, M., and Bigi, A. (2016). Gelatin Porous Scaffolds as Delivery Systems of Calcium Alendronate. Macromol Biosci.
Ren, K., Cui, H., Xu, Q., He, C., Li, G., and Chen, X. (2016). Injectable Polypeptide Hydrogels with Tunable Microenvironment for 3D Spreading and Chondrogenic Differentiation of Bone Marrow-derived Mesenchymal Stem Cells. Biomacromolecules.
Ruminski, S., Ostrowska, B., Jaroszewicz, J., Skirecki, T., Wlodarski, K., Swieszkowski, W., and Lewandowska-Szumiel, M. (2016). 3D printed PCL-based scaffolds provide an advantageous environment for osteogenic differentiation of human adipose-derived stem cells. J Tissue Eng Regen Med.
Salamanna, F., Borsari, V., Brogini, S., Giavaresi, G., Parrilli, A., Cepollaro, S., Cadossi, M., Martini, L., Mazzotti, A., and Fini, M. (2016). An in vitro 3D bone metastasis model by using a human bone tissue culture and human sex-related cancer cells. Oncotarget.
Samavedi, S., Diaz-Rodriguez, P., Erndt-Marino, J. D., and Hahn, M. (2016). A 3D chondrocyte-macrophage co-culture system to probe inflammation in experimental osteoarthritis. Tissue Eng Part A.
Severn, C. E., Macedo, H., Eagle, M. J., Rooney, P., Mantalaris, A., and Toye, A. M. (2016). Polyurethane scaffolds seeded with CD34(+) cells maintain early stem cells whilst also facilitating prolonged egress of haematopoietic progenitors. Sci Rep 6, 32149.
Shumilova, A. A., Myltygashev, M. P., Kirichenko, A. K., Nikolaeva, E. D., Volova, T. G., and Shishatskaya, E. I. (2016). Porous 3d implants of degradable poly-3-hydroxybutyrate used to enhance regeneration of rat cranial defect. J Biomed Mater Res A.
Soffer-Tsur, N., Peer, D., and Dvir, T. (2016). ECM-based macroporous sponges release essential factors to support the growth of hematopoietic cells. J Control Release.
Sun, M., Liu, A., Shao, H., Yang, X., Ma, C., Yan, S., Liu, Y., He, Y., and Gou, Z. (2016). Systematical Evaluation of Mechanically Strong 3D Printed Diluted magnesium Doping Wollastonite Scaffolds on Osteogenic Capacity in Rabbit Calvarial Defects. Sci Rep 6, 34029.
Westphal, I., Jedelhauser, C., Liebsch, G., Wilhelmi, A., Aszodi, A., and Schieker, M. (2016). Oxygen mapping: Probing a novel seeding strategy for bone tissue engineering. Biotechnol Bioeng.
Zhou, A., Chen, S., He, B., Zhao, W., Chen, X., and Jiang, D. (2016a). Controlled release of TGF-beta 1 from RADA self-assembling peptide hydrogel scaffolds. Drug Des Devel Ther 10, 3043-3051.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016b). 3D Bioprinting a Cell-laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016c). 3D Bioprinting a Cell-Laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Bone Marrow
Ardjomandi, N., Huth, J., Stamov, D. R., Henrich, A., Klein, C., Wendel, H. P., Reinert, S., and Alexander, D. (2016). Surface biofunctionalization of beta-TCP blocks using aptamer 74 for bone tissue engineering. Mater Sci Eng C Mater Biol Appl 67, 267-275.
Bretschneider, H., Stiehler, M., Hartmann, A., Boger, E., Osswald, C., Mollenhauer, J., Gaissmaier, C., and Gunther, K. P. (2016). Characterization of primary chondrocytes harvested from hips with femoroacetabular impingement. Osteoarthritis Cartilage 24, 1622-1628.
Chatzinikolaidou, M., Pontikoglou, C., Terzaki, K., Kaliva, M., Kalyva, A., Papadaki, E., Vamvakaki, M., and Farsari, M. (2016). Recombinant human bone morphogenetic protein 2 (rhBMP-2) immobilized on laser-fabricated 3D scaffolds enhance osteogenesis. Colloids Surf B Biointerfaces 149, 233-242.
Fitzgerald, K. A., Guo, J., Raftery, R. M., Castano, I. M., Curtin, C. M., Gooding, M., Darcy, R., FJ, O. B., and CM, O. D. (2016). Nanoparticle-mediated siRNA delivery assessed in a 3D co-culture model simulating prostate cancer bone metastasis. Int J Pharm 511, 1058-1069.
Guneta, V., Tan, N. S., Chan, S. K., Tanavde, V., Lim, T. C., Wong, T. C., and Choong, C. (2016). Comparative study of adipose-derived stem cells and bone marrow-derived stem cells in similar microenvironmental conditions. Exp Cell Res.
Hoshi, K., Fujihara, Y., Mori, Y., Asawa, Y., Kanazawa, S., Nishizawa, S., Misawa, M., Numano, T., Inoue, H., Sakamoto, T., et al. (2016). Production of three-dimensional tissue-engineered cartilage through mutual fusion of chondrocyte pellets. Int J Oral Maxillofac Surg 45, 1177-1185.
Huang, M., Li, T., Pan, T., Zhao, N., Yao, Y., Zhai, Z., Zhou, J., Du, C., and Wang, Y. (2016). Controlling the strontium-doping in calcium phosphate microcapsules through yeast-regulated biomimetic mineralization. Regen Biomater 3, 269-276.
Jakubikova, J., Cholujova, D., Hideshima, T., Gronesova, P., Soltysova, A., Harada, T., Joo, J., Kong, S. Y., Szalat, R. E., Richardson, P. G., et al. (2016). A novel 3D mesenchymal stem cell model of the multiple myeloma bone marrow niche: biologic and clinical applications. Oncotarget.
Kalisky, J., Raso, J., Rigothier, C., Remy, M., Siadous, R., Bareille, R., Fricain, J. C., Amedee-Vilamitjana, J., Oliveira, H., and Devillard, R. (2016). An easy-to-use and versatile method for building cell-laden microfibres. Sci Rep 6, 33328.
Kaur, G., Willsmore, T., Gulati, K., Zinonos, I., Wang, Y., Kurian, M., Hay, S., Losic, D., and Evdokiou, A. (2016). Titanium wire implants with nanotube arrays: A study model for localized cancer treatment. Biomaterials 101, 176-188.
Mohiti-Asli, M., Molina, C., Diteepeng, T., Pourdeyhimi, B., and Loboa, E. (2016). Evaluation of Silver Ion Releasing Scaffolds in a 3D Co-culture System of MRSA and Human Adipose Derived Stem Cells for Their Potential Use in Treatment or Prevention of Osteomyelitis. Tissue Eng Part A.
Pagani, S., Borsari, V., Veronesi, F., Ferrari, A., Cepollaro, S., Torricelli, P., Filardo, G., and Fini, M. (2016). Increased Chondrogenic Potential of Mesenchymal Cells from Adipose Tissue Versus Bone Marrow Derived Cells in Osteoarthritic In Vitro Models. J Cell Physiol.
Panzavolta, S., Torricelli, P., Casolari, S., Parrilli, A., Amadori, S., Fini, M., and Bigi, A. (2016). Gelatin Porous Scaffolds as Delivery Systems of Calcium Alendronate. Macromol Biosci.
Ren, K., Cui, H., Xu, Q., He, C., Li, G., and Chen, X. (2016). Injectable Polypeptide Hydrogels with Tunable Microenvironment for 3D Spreading and Chondrogenic Differentiation of Bone Marrow-derived Mesenchymal Stem Cells. Biomacromolecules.
Ruminski, S., Ostrowska, B., Jaroszewicz, J., Skirecki, T., Wlodarski, K., Swieszkowski, W., and Lewandowska-Szumiel, M. (2016). 3D printed PCL-based scaffolds provide an advantageous environment for osteogenic differentiation of human adipose-derived stem cells. J Tissue Eng Regen Med.
Salamanna, F., Borsari, V., Brogini, S., Giavaresi, G., Parrilli, A., Cepollaro, S., Cadossi, M., Martini, L., Mazzotti, A., and Fini, M. (2016). An in vitro 3D bone metastasis model by using a human bone tissue culture and human sex-related cancer cells. Oncotarget.
Samavedi, S., Diaz-Rodriguez, P., Erndt-Marino, J. D., and Hahn, M. (2016). A 3D chondrocyte-macrophage co-culture system to probe inflammation in experimental osteoarthritis. Tissue Eng Part A.
Severn, C. E., Macedo, H., Eagle, M. J., Rooney, P., Mantalaris, A., and Toye, A. M. (2016). Polyurethane scaffolds seeded with CD34(+) cells maintain early stem cells whilst also facilitating prolonged egress of haematopoietic progenitors. Sci Rep 6, 32149.
Shumilova, A. A., Myltygashev, M. P., Kirichenko, A. K., Nikolaeva, E. D., Volova, T. G., and Shishatskaya, E. I. (2016). Porous 3d implants of degradable poly-3-hydroxybutyrate used to enhance regeneration of rat cranial defect. J Biomed Mater Res A.
Soffer-Tsur, N., Peer, D., and Dvir, T. (2016). ECM-based macroporous sponges release essential factors to support the growth of hematopoietic cells. J Control Release.
Sun, M., Liu, A., Shao, H., Yang, X., Ma, C., Yan, S., Liu, Y., He, Y., and Gou, Z. (2016). Systematical Evaluation of Mechanically Strong 3D Printed Diluted magnesium Doping Wollastonite Scaffolds on Osteogenic Capacity in Rabbit Calvarial Defects. Sci Rep 6, 34029.
Westphal, I., Jedelhauser, C., Liebsch, G., Wilhelmi, A., Aszodi, A., and Schieker, M. (2016). Oxygen mapping: Probing a novel seeding strategy for bone tissue engineering. Biotechnol Bioeng.
Zhou, A., Chen, S., He, B., Zhao, W., Chen, X., and Jiang, D. (2016a). Controlled release of TGF-beta 1 from RADA self-assembling peptide hydrogel scaffolds. Drug Des Devel Ther 10, 3043-3051.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016b). 3D Bioprinting a Cell-laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016c). 3D Bioprinting a Cell-Laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Breast
Arya, A. D., Hallur, P. M., Karkisaval, A. G., Gudipati, A., Rajendiran, S., Dhavale, V., Ramachandran, B., Jayaprakash, A., Gundiah, N., and Chaubey, A. (2016). Gelatin Methacrylate Hydrogels as Biomimetic Three-Dimensional Matrixes for Modeling Breast Cancer Invasion and Chemoresponse in Vitro. ACS Appl Mater Interfaces 8, 22005-22017.
Cepeda, M. A., Pelling, J. J., Evered, C. L., Williams, K. C., Freedman, Z., Stan, I., Willson, J. A., Leong, H. S., and Damjanovski, S. (2016). Less is more: low expression of MT1-MMP is optimal to promote migration and tumourigenesis of breast cancer cells. Mol Cancer 15, 65.
Diermeier, S. D., Chang, K. C., Freier, S. M., Song, J., El Demerdash, O., Krasnitz, A., Rigo, F., Bennett, C. F., and Spector, D. L. (2016). Mammary Tumor-Associated RNAs Impact Tumor Cell Proliferation, Invasion, and Migration. Cell Rep 17, 261-274.
Jarde, T., Lloyd-Lewis, B., Thomas, M., Kendrick, H., Melchor, L., Bougaret, L., Watson, P. D., Ewan, K., Smalley, M. J., and Dale, T. C. (2016). Wnt and Neuregulin1/ErbB signalling extends 3D culture of hormone responsive mammary organoids. Nat Commun 7, 13207.
Kaur, G., Willsmore, T., Gulati, K., Zinonos, I., Wang, Y., Kurian, M., Hay, S., Losic, D., and Evdokiou, A. (2016). Titanium wire implants with nanotube arrays: A study model for localized cancer treatment. Biomaterials 101, 176-188.
Li, L., Chen, J., Xiong, G., St Clair, D. K., Xu, W., and Xu, R. (2016). Increased ROS production in non-polarized mammary epithelial cells induces monocyte infiltration in 3D culture. J Cell Sci.
Marshall, L. E., Koomullil, R., Frost, A. R., and Berry, J. L. (2016). Computational and Experimental Analysis of Fluid Transport Through Three-Dimensional Collagen-Matrigel Hydrogels. Ann Biomed Eng.
Marusyk, A., Tabassum, D., Janiszewska, M., Place, A., Trinh, A., Rozhok, A. I., Pyne, S., Guerriero, J., Shu, S., Ekram, M., et al. (2016). Spatial proximity to fibroblasts impacts molecular features and therapeutic sensitivity of breast cancer cells influencing clinical outcomes. Cancer Res.
Pradhan, S., Hassani, I., Seeto, W. J., and Lipke, E. A. (2016). PEG-fibrinogen Hydrogels for Three-dimensional Breast Cancer Cell Culture. J Biomed Mater Res A.
Priwitaningrum, D. L., Blonde, J. G., Sridhar, A., van Baarlen, J., Hennink, W. E., Storm, G., Le Gac, S., and Prakash, J. (2016). Tumor stroma-containing 3D spheroid arrays: A tool to study nanoparticle penetration. J Control Release.
Rossetti, S., Bshara, W., Reiners, J. A., Corlazzoli, F., Miller, A., and Sacchi, N. (2016a). Harnessing 3D models of mammary epithelial morphogenesis: An off the beaten path approach to identify candidate biomarkers of early stage breast cancer. Cancer Lett 380, 375-383.
Rossetti, S., Wierzbicki, A. J., and Sacchi, N. (2016b). Mammary epithelial morphogenesis and early breast cancer. Evidence of involvement of basal components of the RNA Polymerase I transcription machinery. Cell Cycle 15, 2515-2526.
Salamanna, F., Borsari, V., Brogini, S., Giavaresi, G., Parrilli, A., Cepollaro, S., Cadossi, M., Martini, L., Mazzotti, A., and Fini, M. (2016). An in vitro 3D bone metastasis model by using a human bone tissue culture and human sex-related cancer cells. Oncotarget.
Takai, K., Le, A., Weaver, V. M., and Werb, Z. (2016). Targeting the cancer-associated fibroblasts as a treatment in triple-negative breast cancer. Oncotarget.
Walker, S., Foster, F., Wood, A., Owens, T., Brennan, K., Streuli, C. H., and Gilmore, A. P. (2016). Oncogenic activation of FAK drives apoptosis suppression in a 3D-culture model of breast cancer initiation. Oncotarget.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016a). 3D Bioprinting a Cell-laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016b). 3D Bioprinting a Cell-Laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Colon
Hibiya, S., Tsuchiya, K., Hayashi, R., Fukushima, K., Horita, N., Watanabe, S., Shirasaki, T., Nishimura, R., Kimura, N., Nishimura, T., et al. (2016). Long-term inflammation transforms intestinal epithelial cells of colonic organoids. J Crohns Colitis.
Stankevicius, V., Vasauskas, G., Noreikiene, R., Kuodyte, K., Valius, M., and Suziedelis, K. (2016). Extracellular Matrix-dependent Pathways in Colorectal Cancer Cell Lines Reveal Potential Targets for Anticancer Therapies. Anticancer Res 36, 4559-4567.
Ushijima, H., Horyozaki, A., and Maeda, M. (2016). Anisomycin-induced GATA-6 degradation accompanying a decrease of proliferation of colorectal cancer cell. Biochem Biophys Res Commun 478, 481-485.
Yue, X., Lukowski, J. K., Weaver, E. M., Skube, S. B., and Hummon, A. B. (2016). Quantitative Proteomic and Phosphoproteomic Comparison of 2D and 3D Colon Cancer Cell Culture Models. J Proteome Res.
Heart
Arevalos, C. A., Berg, J. M., Nguyen, J. M., Godfrey, E. L., Iriondo, C., and Grande-Allen, K. J. (2016). Valve Interstitial Cells Act in a Pericyte Manner Promoting Angiogensis and Invasion by Valve Endothelial Cells. Ann Biomed Eng 44, 2707-2723.
Dong, W., Lu, A., Zhao, J., Yin, S., Ou, B., and Feng, H. (2016). An efficient and simple co-culture method for isolating primary human hepatic cells: Potential application for tumor microenvironment research. Oncol Rep 36, 2126-2134.
Hof, A., Raschke, S., Baier, K., Nehrenheim, L., Selig, J. I., Schomaker, M., Lichtenberg, A., Meyer, H., and Akhyari, P. (2016). Challenges in developing a reseeded, tissue-engineered aortic valve prosthesis. Eur J Cardiothorac Surg 50, 446-455.
Hogrebe, N. J., and Gooch, K. J. (2016). Direct influence of culture dimensionality on human Mesenchymal stem cells differentiation at various matrix stiffnesses using a fibrous self-assembling peptide hydrogel. J Biomed Mater Res A 104, 2356-2368.
Hogrebe, N. J., Reinhardt, J. W., and Gooch, K. J. (2016). Biomaterial microarchitecture: A potent regulator of individual cell behavior and multicellular organization. J Biomed Mater Res A.
Jung, J. P., Bhuiyan, D. B., and Ogle, B. M. (2016). Solid organ fabrication: comparison of decellularization to 3D bioprinting. Biomater Res 20, 27.
Lovitt, C. J., Shelper, T. B., and Avery, V. M. (2016). Cancer drug discovery: recent innovative approaches to tumor modeling. Expert Opin Drug Discov 11, 885-894.
Patel, N. M., Yazdi, I. K., Tasciotti, E., and Birla, R. K. (2016). Optimizing cell seeding and retention in a three-dimensional bioengineered cardiac ventricle: The two-stage cellularization model. Biotechnol Bioeng 113, 2275-2285.
Ryan, A. J., Brougham, C. M., Garciarena, C. D., Kerrigan, S. W., and O'Brien, F. J. (2016). Towards 3D in vitro models for the study of cardiovascular tissues and disease. Drug Discov Today 21, 1437-1445.
Silva, A. C., Rodrigues, S. C., Caldeira, J., Nunes, A. M., Sampaio-Pinto, V., Resende, T. P., Oliveira, M. J., Barbosa, M. A., Thorsteinsdottir, S., Nascimento, D. S., and Pinto-do, O. P. (2016). Three-dimensional scaffolds of fetal decellularized hearts exhibit enhanced potential to support cardiac cells in comparison to the adult. Biomaterials 104, 52-64.
Uzun, A. U., Mannhardt, I., Breckwoldt, K., Horvath, A., Johannsen, S. S., Hansen, A., Eschenhagen, T., and Christ, T. (2016). Ca(2+)-Currents in Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes Effects of Two Different Culture Conditions. Front Pharmacol 7, 300.
Liver
Arai, K., Yoshida, T., Okabe, M., Goto, M., Mir, T. A., Soko, C., Tsukamoto, Y., Akaike, T., Nikaido, T., Zhou, K., and Nakamura, M. (2016). Fabrication of 3D-culture platform with sandwich architecture for preserving liver-specific functions of hepatocytes using 3D bioprinter. J Biomed Mater Res A.
Broutier, L., Andersson-Rolf, A., Hindley, C. J., Boj, S. F., Clevers, H., Koo, B. K., and Huch, M. (2016). Culture and establishment of self-renewing human and mouse adult liver and pancreas 3D organoids and their genetic manipulation. Nat Protoc 11, 1724-1743.
Chitrangi, S., Nair, P., and Khanna, A. (2016). 3D engineered In vitrohepatospheroids for studying drug toxicity and metabolism. Toxicol In Vitro.
Deharde, D., Schneider, C., Hiller, T., Fischer, N., Kegel, V., Lubberstedt, M., Freyer, N., Hengstler, J. G., Andersson, T. B., Seehofer, D., et al. (2016). Bile canaliculi formation and biliary transport in 3D sandwich-cultured hepatocytes in dependence of the extracellular matrix composition. Arch Toxicol 90, 2497-2511.
Dong, W., Lu, A., Zhao, J., Yin, S., Ou, B., and Feng, H. (2016). An efficient and simple co-culture method for isolating primary human hepatic cells: Potential application for tumor microenvironment research. Oncol Rep 36, 2126-2134.
Flanagan, D. J., Schwab, R. H., Tran, B. M., Phesse, T. J., and Vincan, E. (2016). Isolation and Culture of Adult Intestinal, Gastric, and Liver Organoids for Cre-recombinase-Mediated Gene Deletion. Methods Mol Biol.
Funk, C., and Roth, A. (2016). Current limitations and future opportunities for prediction of DILI from in vitro. Arch Toxicol.
Gao, Q., Wang, Z. C., Duan, M., Lin, Y. H., Zhou, X. Y., Worthley, D. L., Wang, X. Y., Niu, G., Xia, Y., Deng, M., et al. (2016). Cell Culture System for Analysis of Genetic Heterogeneity Within Hepatocellular Carcinomas and Response to Pharmacologic Agents. Gastroenterology.
Haque, A., Gheibi, P., Gao, Y., Foster, E., Son, K. J., You, J., Stybayeva, G., Patel, D., and Revzin, A. (2016). Cell biology is different in small volumes: endogenous signals shape phenotype of primary hepatocytes cultured in microfluidic channels. Sci Rep 6, 33980.
Jang, J. W., Song, Y., Kim, K. M., Kim, J. S., Choi, E. K., Kim, J., and Seo, H. (2016). Hepatocellular carcinoma-targeted drug discovery through image-based phenotypic screening in co-cultures of HCC cells with hepatocytes. BMC Cancer 16, 810.
Lauschke, V. M., Hendriks, D. F., Bell, C. C., Andersson, T. B., and Ingelman-Sundberg, M. (2016). Novel 3D Culture Systems for Studies of Human Liver Function and Assessments of the Hepatotoxicity of Drugs and Drug Candidates. Chem Res Toxicol.
Lee, D. W., Oh, W. Y., Yi, S. H., Ku, B., Lee, M. Y., Cho, Y. H., and Yang, M. (2016). Estimation of bisphenol A-Human toxicity by 3D cell culture arrays, high throughput alternatives to animal tests. Toxicol Lett 259, 87-94.
Long, T. J., Cosgrove, P. A., Dunn, R. T., Stolz, D. B., Hamadeh, H. K., Afshari, C., McBride, H., and Griffith, L. G. (2016). Modeling therapeutic antibody-small molecule drug-drug interactions using a 3D perfusable human liver co-culture platform. Drug Metab Dispos.
Norona, L. M., Nguyen, D. G., Gerber, D. A., Presnell, S. C., and LeCluyse, E. L. (2016). Modeling Compound-Induced Fibrogenesis In Vitro Using Three-Dimensional Bioprinted Human Liver Tissues. Toxicol Sci.
Pang, Y., Horimoto, Y., Sutoko, S., Montagne, K., Shinohara, M., Mathiue, D., Komori, K., Anzai, M., Niino, T., and Sakai, Y. (2016). Novel integrative methodology for engineering large liver tissue equivalents based on three-dimensional scaffold fabrication and cellular aggregate assembly. Biofabrication 8, 035016.
Pettinato, G., Ramanathan, R., Fisher, R. A., Mangino, M. J., Zhang, N., and Wen, X. (2016). Scalable Differentiation of Human iPSCs in a Multicellular Spheroid-based 3D Culture into Hepatocyte-like Cells through Direct Wnt/beta-catenin Pathway Inhibition. Sci Rep 6, 32888.
Richert, L., Baze, A., Parmentier, C., Gerets, H. H., Sison-Young, R., Dorau, M., Lovatt, C., Czich, A., Goldring, C., Park, B. K., et al. (2016). Cytotoxicity evaluation using cryopreserved primary human hepatocytes in various culture formats. Toxicol Lett 258, 207-215.
Sirenko, O., Hancock, M. K., Hesley, J., Hong, D., Cohen, A., Gentry, J., Carlson, C. B., and Mann, D. A. (2016). Phenotypic Characterization of Toxic Compound Effects on Liver Spheroids Derived from iPSC Using Confocal Imaging and Three-Dimensional Image Analysis. Assay Drug Dev Technol 14, 381-394.
Tanimizu, N., and Mitaka, T. (2016). Morphogenesis of liver epithelial cells. Hepatol Res 46, 964-976.
Waisbourd-Zinman, O., Koh, H., Tsai, S., Lavrut, P. M., Dang, C., Zhao, X., Pack, M., Cave, J., Hawes, M., Koo, K. A., et al. (2016). The toxin biliatresone causes mouse extrahepatic cholangiocyte damage and fibrosis through decreased glutathione and SOX17. Hepatology 64, 880-893.
Wang, B., Jakus, A. E., Baptista, P. M., Soker, S., Soto-Gutierrez, A., Abecassis, M. M., Shah, R. N., and Wertheim, J. A. (2016). Functional Maturation of Induced Pluripotent Stem Cell Hepatocytes in Extracellular Matrix-A Comparative Analysis of Bioartificial Liver Microenvironments. Stem Cells Transl Med 5, 1257-1267.
Zeilinger, K., Freyer, N., Damm, G., Seehofer, D., and Knospel, F. (2016). Cell sources for in vitro human liver cell culture models. Exp Biol Med (Maywood) 241, 1684-1698.
Zhang, H., Siegel, C. T., Li, J., Lai, J., Shuai, L., Lai, X., Zhang, Y., Jiang, Y., Bie, P., and Bai, L. (2016). Functional liver tissue engineering by an adult mouse liver-derived neuro-glia antigen 2-expressing stem/progenitor population. J Tissue Eng Regen Med.
Lung
Arai, K., Eguchi, T., Rahman, M. M., Sakamoto, R., Masuda, N., Nakatsura, T., Calderwood, S. K., Kozaki, K., and Itoh, M. (2016). A Novel High-Throughput 3D Screening System for EMT Inhibitors: A Pilot Screening Discovered the EMT Inhibitory Activity of CDK2 Inhibitor SU9516. PLoS One 11, e0162394.
Chimenti, I., Pagano, F., Angelini, F., Siciliano, C., Mangino, G., Picchio, V., De Falco, E., Peruzzi, M., Carnevale, R., Ibrahim, M., et al. (2016). Human Lung Spheroids as In Vitro Niches of Lung Progenitor Cells With Distinctive Paracrine and Plasticity Properties. Stem Cells Transl Med.
Choi, J., Iich, E., and Lee, J. H. (2016). Organogenesis of adult lung in a dish: Differentiation, disease and therapy. Dev Biol.
Han, H. W., and Hsu, S. H. (2016). Chitosan-hyaluronan based 3D co-culture platform for studying the crosstalk of lung cancer cells and mesenchymal stem cells. Acta Biomater 42, 157-167.
Hogrebe, N. J., and Gooch, K. J. (2016). Direct influence of culture dimensionality on human Mesenchymal stem cells differentiation at various matrix stiffnesses using a fibrous self-assembling peptide hydrogel. J Biomed Mater Res A 104, 2356-2368.
Hogrebe, N. J., Reinhardt, J. W., and Gooch, K. J. (2016). Biomaterial microarchitecture: A potent regulator of individual cell behavior and multicellular organization. J Biomed Mater Res A.
Ishiguro, S., Cai, S., Uppalapati, D., Turner, K., Zhang, T., Forrest, W. C., Forrest, M. L., and Tamura, M. (2016). Intratracheal Administration of Hyaluronan-Cisplatin Conjugate Nanoparticles Significantly Attenuates Lung Cancer Growth in Mice. Pharm Res 33, 2517-2529.
Jung, J. P., Bhuiyan, D. B., and Ogle, B. M. (2016). Solid organ fabrication: comparison of decellularization to 3D bioprinting. Biomater Res 20, 27.
Roudsari, L. C., Jeffs, S. E., Witt, A. S., Gill, B. J., and West, J. L. (2016). A 3D Poly(ethylene glycol)-based Tumor Angiogenesis Model to Study the Influence of Vascular Cells on Lung Tumor Cell Behavior. Sci Rep 6, 32726.
Stankevicius, V., Vasauskas, G., Bulotiene, D., Butkyte, S., Jarmalaite, S., Rotomskis, R., and Suziedelis, K. (2016). Gene and miRNA expression signature of Lewis lung carcinoma LLC1 cells in extracellular matrix enriched microenvironment. BMC Cancer 16, 789.
Takai, K., Le, A., Weaver, V. M., and Werb, Z. (2016). Targeting the cancer-associated fibroblasts as a treatment in triple-negative breast cancer. Oncotarget.
Teixeira, S. F., de Azevedo, R. A., Silva, A. C., Braga, R. C., Jorge, S. D., Barbuto, J. A., Andrade, C. H., and Ferreira, A. K. (2016). Evaluation of cytotoxic effect of the combination of a pyridinyl carboxamide derivative and oxaliplatin on NCI-H1299 human non-small cell lung carcinoma cells. Biomed Pharmacother 84, 1019-1028.
Bono, N., Pezzoli, D., Levesque, L., Loy, C., Candiani, G., Fiore, G. B., and Mantovani, D. (2016). Unraveling the role of mechanical stimulation on smooth muscle cells: A comparative study between 2D and 3D models. Biotechnol Bioeng 113, 2254-2263.
Kinoshita, K., Iwase, M., Yamada, M., Yajima, Y., and Seki, M. (2016). Fabrication of multilayered vascular tissues using microfluidic agarose hydrogel platforms. Biotechnol J.
Li, M., Nagamori, E., and Kino-Oka, M. (2016). Disruption of myoblast alignment by highly motile rhabdomyosarcoma cell in tissue structure. J Biosci Bioeng.
Nakamura, T., Takagi, S., Kamon, T., Yamasaki, K. I., and Fujisato, T. (2016). Development and evaluation of a removable tissue-engineered muscle with artificial tendons. J Biosci Bioeng.
Patel, N. M., Yazdi, I. K., Tasciotti, E., and Birla, R. K. (2016). Optimizing cell seeding and retention in a three-dimensional bioengineered cardiac ventricle: The two-stage cellularization model. Biotechnol Bioeng 113, 2275-2285.
Priwitaningrum, D. L., Blonde, J. G., Sridhar, A., van Baarlen, J., Hennink, W. E., Storm, G., Le Gac, S., and Prakash, J. (2016). Tumor stroma-containing 3D spheroid arrays: A tool to study nanoparticle penetration. J Control Release.
Shima, F., Narita, H., Hiura, A., Shimoda, H., and Akashi, M. (2016). Construction and histological analysis of a 3D human arterial wall model containing vasa vasorum using a layer-by-layer technique. J Biomed Mater Res A.
Waisbourd-Zinman, O., Koh, H., Tsai, S., Lavrut, P. M., Dang, C., Zhao, X., Pack, M., Cave, J., Hawes, M., Koo, K. A., et al. (2016). The toxin biliatresone causes mouse extrahepatic cholangiocyte damage and fibrosis through decreased glutathione and SOX17. Hepatology 64, 880-893.
Nerve
Adams, C. F., Dickson, A. W., Kuiper, J. H., and Chari, D. M. (2016). Nanoengineering neural stem cells on biomimetic substrates using magnetofection technology. Nanoscale 8, 17869-17880.
Kim, B. C., Jun, S. M., Kim, S. Y., Kwon, Y. D., Choe, S. C., Kim, E. C., Lee, J. H., Kim, J., Suh, J. F., and Hwang, Y. S. (2016). Engineering three dimensional micro nerve tissue using postnatal stem cells from human dental apical papilla. Biotechnol Bioeng.
Lee, H. K., Velazquez Sanchez, C., Chen, M., Morin, P. J., Wells, J. M., Hanlon, E. B., and Xia, W. (2016). Three Dimensional Human Neuro-Spheroid Model of Alzheimer's Disease Based on Differentiated Induced Pluripotent Stem Cells. PLoS One 11, e0163072.
Simao, D., Terrasso, A. P., Teixeira, A. P., Brito, C., Sonnewald, U., and Alves, P. M. (2016). Functional metabolic interactions of human neuron-astrocyte 3D in vitro networks. Sci Rep 6, 33285.
Teixeira, F. G., Vasconcelos, N. L., Gomes, E. D., Marques, F., Sousa, J. C., Sousa, N., Silva, N. A., Assuncao-Silva, R., Lima, R., and Salgado, A. J. (2016). Bioengineered cell culture systems of central nervous system injury and disease. Drug Discov Today 21, 1456-1463.
Prostate
Backer, A., Erhardt, O., Wietbrock, L., Schel, N., Goppert, B., Abaffy, P., Sollich, T., Cecilia, A., and Gruhl, F. J. (2016). Silk scaffolds connected with different naturally occurring biomaterials for prostate cancer cell cultivation in 3D. Biopolymers.
Booij, T. H., Klop, M. J., Yan, K., Szantai-Kis, C., Szokol, B., Orfi, L., van de Water, B., Keri, G., and Price, L. S. (2016). Development of a 3D Tissue Culture-Based High-Content Screening Platform That Uses Phenotypic Profiling to Discriminate Selective Inhibitors of Receptor Tyrosine Kinases. J Biomol Screen 21, 912-922.
Cepeda, M. A., Pelling, J. J., Evered, C. L., Williams, K. C., Freedman, Z., Stan, I., Willson, J. A., Leong, H. S., and Damjanovski, S. (2016). Less is more: low expression of MT1-MMP is optimal to promote migration and tumourigenesis of breast cancer cells. Mol Cancer 15, 65.
Eder, T., Weber, A., Neuwirt, H., Grunbacher, G., Ploner, C., Klocker, H., Sampson, N., and Eder, I. E. (2016). Cancer-Associated Fibroblasts Modify the Response of Prostate Cancer Cells to Androgen and Anti-Androgens in Three-Dimensional Spheroid Culture. Int J Mol Sci 17.
Fitzgerald, K. A., Guo, J., Raftery, R. M., Castano, I. M., Curtin, C. M., Gooding, M., Darcy, R., FJ, O. B., and CM, O. D. (2016). Nanoparticle-mediated siRNA delivery assessed in a 3D co-culture model simulating prostate cancer bone metastasis. Int J Pharm 511, 1058-1069.
Hao, Y., Zerdoum, A. B., Stuffer, A. J., Rajasekaran, A. K., and Jia, X. (2016). Biomimetic Hydrogels Incorporating Polymeric Cell-Adhesive Peptide to Promote the 3D Assembly of Tumoroids. Biomacromolecules.
Perico, M. E., Grasso, S., Brunelli, M., Martignoni, G., Munari, E., Moiso, E., Fracasso, G., Cestari, T., Naim, H. Y., Bronte, V., et al. (2016). Prostate-specific membrane antigen (PSMA) assembles a macromolecular complex regulating growth and survival of prostate cancer cells "in vitro" and correlating with progression "in vivo". Oncotarget.
Salamanna, F., Borsari, V., Brogini, S., Giavaresi, G., Parrilli, A., Cepollaro, S., Cadossi, M., Martini, L., Mazzotti, A., and Fini, M. (2016). An in vitro 3D bone metastasis model by using a human bone tissue culture and human sex-related cancer cells. Oncotarget.
Wang, M., Nagle, R. B., Knudsen, B. S., Rogers, G. C., and Cress, A. E. (2016). A basal cell defect promotes budding of prostatic intraepithelial neoplasia. J Cell Sci.
Endothelial cells
Arevalos, C. A., Berg, J. M., Nguyen, J. M., Godfrey, E. L., Iriondo, C., and Grande-Allen, K. J. (2016). Valve Interstitial Cells Act in a Pericyte Manner Promoting Angiogensis and Invasion by Valve Endothelial Cells. Ann Biomed Eng 44, 2707-2723.
Dai, X., Ma, C., Lan, Q., and Xu, T. (2016). 3D bioprinted glioma stem cells for brain tumor model and applications of drug susceptibility. Biofabrication 8, 045005.
Dong, W., Lu, A., Zhao, J., Yin, S., Ou, B., and Feng, H. (2016). An efficient and simple co-culture method for isolating primary human hepatic cells: Potential application for tumor microenvironment research. Oncol Rep 36, 2126-2134.
Fong, E. L., Harrington, D. A., Farach-Carson, M. C., and Yu, H. (2016). Heralding a new paradigm in 3D tumor modeling. Biomaterials 108, 197-213.
Kim, S., Chung, M., Ahn, J., Lee, S., and Jeon, N. L. (2016). Interstitial flow regulates the angiogenic response and phenotype of endothelial cells in a 3D culture model. Lab Chip 16, 4189-4199.
Kinoshita, K., Iwase, M., Yamada, M., Yajima, Y., and Seki, M. (2016). Fabrication of multilayered vascular tissues using microfluidic agarose hydrogel platforms. Biotechnol J.
Li, S., Liu, Y. Y., Liu, L. J., and Hu, Q. X. (2016). A Versatile Method for Fabricating Tissue Engineering Scaffolds with a Three-Dimensional Channel for Prevasculature Networks. ACS Appl Mater Interfaces 8, 25096-25103.
McCoy, M. G., Seo, B. R., Choi, S., and Fischbach, C. (2016). Collagen I hydrogel microstructure and composition conjointly regulate vascular network formation. Acta Biomater 44, 200-208.
Norona, L. M., Nguyen, D. G., Gerber, D. A., Presnell, S. C., and LeCluyse, E. L. (2016). Modeling Compound-Induced Fibrogenesis In Vitro Using Three-Dimensional Bioprinted Human Liver Tissues. Toxicol Sci.
Roberts, M. A., Kotha, S. S., Phong, K. T., and Zheng, Y. (2016). Micropatterning and Assembly of 3D Microvessels. J Vis Exp.
Roudsari, L. C., Jeffs, S. E., Witt, A. S., Gill, B. J., and West, J. L. (2016). A 3D Poly(ethylene glycol)-based Tumor Angiogenesis Model to Study the Influence of Vascular Cells on Lung Tumor Cell Behavior. Sci Rep 6, 32726.
Sasagawa, T., Shimizu, T., Yamato, M., and Okano, T. (2016). Endothelial colony-forming cells for preparing prevascular three-dimensional cell-dense tissues using cell-sheet engineering. J Tissue Eng Regen Med 10, 739-747.
Schuster, S. L., Segerer, F. J., Gegenfurtner, F. A., Kick, K., Schreiber, C., Albert, M., Vollmar, A. M., Radler, J. O., and Zahler, S. (2016). Contractility as a global regulator of cellular morphology, velocity, and directionality in low-adhesive fibrillary micro-environments. Biomaterials 102, 137-147.
Shima, F., Narita, H., Hiura, A., Shimoda, H., and Akashi, M. (2016). Construction and histological analysis of a 3D human arterial wall model containing vasa vasorum using a layer-by-layer technique. J Biomed Mater Res A.
Takasato, M., Er, P. X., Chiu, H. S., and Little, M. H. (2016). Generation of kidney organoids from human pluripotent stem cells. Nat Protoc 11, 1681-1692.
Tanimizu, N., and Mitaka, T. (2016). Morphogenesis of liver epithelial cells. Hepatol Res 46, 964-976.
Wang, X., Cheng, F., Liu, J., Smatt, J. H., Gepperth, D., Lastusaari, M., Xu, C., and Hupa, L. (2016). Biocomposites of copper-containing mesoporous bioactive glass and nanofibrillated cellulose: Biocompatibility and angiogenic promotion in chronic wound healing application. Acta Biomater.
Xue, C., Xie, J., Zhao, D., Lin, S., Zhou, T., Shi, S., Shao, X., Lin, Y., Zhu, B., and Cai, X. (2016). The JAK/STAT3 signalling pathway regulated angiogenesis in an endothelial cell/adipose-derived stromal cell co-culture, 3D gel model. Cell Prolif.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016a). 3D Bioprinting a Cell-laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016b). 3D Bioprinting a Cell-Laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Fibroblast
Chingwaru, W., Glashoff, R. H., Vidmar, J., Kapewangolo, P., and Sampson, S. L. (2016). Mammalian cell cultures as models for Mycobacterium tuberculosis-human immunodeficiency virus (HIV) interaction studies: A review. Asian Pac J Trop Med 9, 832-838.
Kaufman, G., Nunes, L., Eftimiades, A., and Tutak, W. (2016). Enhancing the Three-Dimensional Structure of Adherent Gingival Fibroblasts and Spheroids via a Fibrous Protein-Based Hydrogel Cover. Cells Tissues Organs.
Priwitaningrum, D. L., Blonde, J. G., Sridhar, A., van Baarlen, J., Hennink, W. E., Storm, G., Le Gac, S., and Prakash, J. (2016). Tumor stroma-containing 3D spheroid arrays: A tool to study nanoparticle penetration. J Control Release.
Sasagawa, T., Shimizu, T., Yamato, M., and Okano, T. (2016). Endothelial colony-forming cells for preparing prevascular three-dimensional cell-dense tissues using cell-sheet engineering. J Tissue Eng Regen Med 10, 739-747.
Shima, F., Narita, H., Hiura, A., Shimoda, H., and Akashi, M. (2016). Construction and histological analysis of a 3D human arterial wall model containing vasa vasorum using a layer-by-layer technique. J Biomed Mater Res A.
Takai, K., Le, A., Weaver, V. M., and Werb, Z. (2016). Targeting the cancer-associated fibroblasts as a treatment in triple-negative breast cancer. Oncotarget.
Wang, X., Cheng, F., Liu, J., Smatt, J. H., Gepperth, D., Lastusaari, M., Xu, C., and Hupa, L. (2016). Biocomposites of copper-containing mesoporous bioactive glass and nanofibrillated cellulose: Biocompatibility and angiogenic promotion in chronic wound healing application. Acta Biomater.
Stem Cells
Adams, C. F., Dickson, A. W., Kuiper, J. H., and Chari, D. M. (2016). Nanoengineering neural stem cells on biomimetic substrates using magnetofection technology. Nanoscale 8, 17869-17880.
Bartfeld, S. (2016). Modeling infectious diseases and host-microbe interactions in gastrointestinal organoids. Dev Biol.
Borg, D. J., Welzel, P. B., Grimmer, M., Friedrichs, J., Weigelt, M., Wilhelm, C., Prewitz, M., Stissel, A., Hommel, A., Kurth, T., et al. (2016). Macroporous biohybrid cryogels for co-housing pancreatic islets with mesenchymal stromal cells. Acta Biomater 44, 178-187.
Brandenberg, N., and Lutolf, M. P. (2016). In Situ Patterning of Microfluidic Networks in 3D Cell-Laden Hydrogels. Adv Mater 28, 7450-7456.
Broutier, L., Andersson-Rolf, A., Hindley, C. J., Boj, S. F., Clevers, H., Koo, B. K., and Huch, M. (2016). Culture and establishment of self-renewing human and mouse adult liver and pancreas 3D organoids and their genetic manipulation. Nat Protoc 11, 1724-1743.
Cairns, D. M., Chwalek, K., Moore, Y. E., Kelley, M. R., Abbott, R. D., Moss, S., and Kaplan, D. L. (2016). Expandable and Rapidly Differentiating Human Induced Neural Stem Cell Lines for Multiple Tissue Engineering Applications. Stem Cell Reports 7, 557-570.
Chimenti, I., Pagano, F., Angelini, F., Siciliano, C., Mangino, G., Picchio, V., De Falco, E., Peruzzi, M., Carnevale, R., Ibrahim, M., et al. (2016). Human Lung Spheroids as In Vitro Niches of Lung Progenitor Cells With Distinctive Paracrine and Plasticity Properties. Stem Cells Transl Med.
Chitrangi, S., Nair, P., and Khanna, A. (2016). 3D engineered In vitrohepatospheroids for studying drug toxicity and metabolism. Toxicol In Vitro.
Choi, J., Iich, E., and Lee, J. H. (2016). Organogenesis of adult lung in a dish: Differentiation, disease and therapy. Dev Biol.
Colacino, J. A. (2016). 3D human tissue culture: modeling environmental effects on the stem cell epigenome. Epigenomics.
Dai, X., Ma, C., Lan, Q., and Xu, T. (2016). 3D bioprinted glioma stem cells for brain tumor model and applications of drug susceptibility. Biofabrication 8, 045005.
DeJonge, R. E., Liu, X. P., Deig, C. R., Heller, S., Koehler, K. R., and Hashino, E. (2016). Modulation of Wnt Signaling Enhances Inner Ear Organoid Development in 3D Culture. PLoS One 11, e0162508.
Flanagan, D. J., Schwab, R. H., Tran, B. M., Phesse, T. J., and Vincan, E. (2016). Isolation and Culture of Adult Intestinal, Gastric, and Liver Organoids for Cre-recombinase-Mediated Gene Deletion. Methods Mol Biol.
Funk, C., and Roth, A. (2016). Current limitations and future opportunities for prediction of DILI from in vitro. Arch Toxicol.
Galuppo, A. G., Chagastelles, P. C., Gamba, D., Iglesias, D. B., Sperling, L., Machado, J., Wendorff, J., Petzhold, C. L., and Pranke, P. (2016). Effect of feeder free poly(lactide-co-glycolide) scaffolds on morphology, proliferation and pluripotency of mouse embryonic stem cells. J Biomed Mater Res A.
Ghanavati, Z., Orazizadeh, M., Bayati, V., Abbaspour, M. R., Khorsandi, L., Mansouri, E., and Neisi, N. (2016). Characterization of A Three-Dimensional Organotypic Co-Culture Skin Model for Epidermal Differentiation of Rat Adipose-Derived Stem Cells. Cell J 18, 289-301.
Gorgun, C., Ozturk, S., Gokalp, S., Vatansever, S., Gurhan, S. I., and Urkmez, A. S. (2016). Synergistic role of three dimensional niche and hypoxia on conservation of cancer stem cell phenotype. Int J Biol Macromol 90, 20-26.
Guneta, V., Tan, N. S., Chan, S. K., Tanavde, V., Lim, T. C., Wong, T. C., and Choong, C. (2016). Comparative study of adipose-derived stem cells and bone marrow-derived stem cells in similar microenvironmental conditions. Exp Cell Res.
Hibiya, S., Tsuchiya, K., Hayashi, R., Fukushima, K., Horita, N., Watanabe, S., Shirasaki, T., Nishimura, R., Kimura, N., Nishimura, T., et al. (2016). Long-term inflammation transforms intestinal epithelial cells of colonic organoids. J Crohns Colitis.
Hogrebe, N. J., and Gooch, K. J. (2016). Direct influence of culture dimensionality on human Mesenchymal stem cells differentiation at various matrix stiffnesses using a fibrous self-assembling peptide hydrogel. J Biomed Mater Res A 104, 2356-2368.
Irvine, S. A., and Venkatraman, S. S. (2016). Bioprinting and Differentiation of Stem Cells. Molecules 21.
Jakubikova, J., Cholujova, D., Hideshima, T., Gronesova, P., Soltysova, A., Harada, T., Joo, J., Kong, S. Y., Szalat, R. E., Richardson, P. G., et al. (2016). A novel 3D mesenchymal stem cell model of the multiple myeloma bone marrow niche: biologic and clinical applications. Oncotarget.
Jarde, T., Lloyd-Lewis, B., Thomas, M., Kendrick, H., Melchor, L., Bougaret, L., Watson, P. D., Ewan, K., Smalley, M. J., and Dale, T. C. (2016). Wnt and Neuregulin1/ErbB signalling extends 3D culture of hormone responsive mammary organoids. Nat Commun 7, 13207.
Jiang, Z., Song, Q., Tang, M., Yang, L., Cheng, Y., Zhang, M., Xu, D., and Cheng, G. (2016). Enhanced Migration of Neural Stem Cells by Microglia Grown on a Three-Dimensional Graphene Scaffold. ACS Appl Mater Interfaces 8, 25069-25077.
Jung, J. P., Bhuiyan, D. B., and Ogle, B. M. (2016). Solid organ fabrication: comparison of decellularization to 3D bioprinting. Biomater Res 20, 27.
Kaisar, M. A., Sajja, R. K., Prasad, S., Abhyankar, V. V., Liles, T., and Cucullo, L. (2016). New experimental models of the blood-brain barrier for CNS drug discovery. Expert Opin Drug Discov.
Kim, B. C., Jun, S. M., Kim, S. Y., Kwon, Y. D., Choe, S. C., Kim, E. C., Lee, J. H., Kim, J., Suh, J. F., and Hwang, Y. S. (2016). Engineering three dimensional micro nerve tissue using postnatal stem cells from human dental apical papilla. Biotechnol Bioeng.
Kropp, C., Kempf, H., Halloin, C., Robles-Diaz, D., Franke, A., Scheper, T., Kinast, K., Knorpp, T., Joos, T. O., Haverich, A., et al. (2016). Impact of Feeding Strategies on the Scalable Expansion of Human Pluripotent Stem Cells in Single-Use Stirred Tank Bioreactors. Stem Cells Transl Med 5, 1289-1301.
Lee, G. H., Park, Y. E., Cho, M., Park, H., and Park, J. Y. (2016). Magnetic force-assisted self-locking metallic bead array for fabrication of diverse concave microwell geometries. Lab Chip 16, 3565-3575.
Leong, M. F., Lu, H. F., Lim, T. C., Du, C., Ma, N. K., and Wan, A. C. (2016). Electrospun polystyrene scaffolds as a synthetic substrate for xeno-free expansion and differentiation of human induced pluripotent stem cells. Acta Biomater.
Li, Z., Araoka, T., Wu, J., Liao, H. K., Li, M., Lazo, M., Zhou, B., Sui, Y., Wu, M. Z., Tamura, I., et al. (2016). 3D Culture Supports Long-Term Expansion of Mouse and Human Nephrogenic Progenitors. Cell Stem Cell 19, 516-529.
Liu, Y., Munoz, N., Tsai, A. C., Logan, T. M., and Ma, T. (2016). Metabolic Reconfiguration Supports Reacquisition of Primitive Phenotype in Human Mesenchymal Stem Cell Aggregates. Stem Cells.
Muffat, J., Li, Y., Yuan, B., Mitalipova, M., Omer, A., Corcoran, S., Bakiasi, G., Tsai, L. H., Aubourg, P., Ransohoff, R. M., and Jaenisch, R. (2016). Efficient derivation of microglia-like cells from human pluripotent stem cells. Nat Med.
Ouyang, L., Yao, R., Zhao, Y., and Sun, W. (2016). Effect of bioink properties on printability and cell viability for 3D bioplotting of embryonic stem cells. Biofabrication 8, 035020.
Petrova, A., Capalbo, A., Jacquet, L., Hazelwood-Smith, S., Dafou, D., Hobbs, C., Arno, M., Farcomeni, A., Devito, L., Badraiq, H., et al. (2016). Induced Pluripotent Stem Cell Differentiation and Three-Dimensional Tissue Formation Attenuate Clonal Epigenetic Differences in Trichohyalin. Stem Cells Dev 25, 1366-1375.
Raja, W. K., Mungenast, A. E., Lin, Y. T., Ko, T., Abdurrob, F., Seo, J., and Tsai, L. H. (2016). Self-Organizing 3D Human Neural Tissue Derived from Induced Pluripotent Stem Cells Recapitulate Alzheimer's Disease Phenotypes. PLoS One 11, e0161969.
Ren, K., Cui, H., Xu, Q., He, C., Li, G., and Chen, X. (2016). Injectable Polypeptide Hydrogels with Tunable Microenvironment for 3D Spreading and Chondrogenic Differentiation of Bone Marrow-derived Mesenchymal Stem Cells. Biomacromolecules.
Roberts, M. A., Kotha, S. S., Phong, K. T., and Zheng, Y. (2016). Micropatterning and Assembly of 3D Microvessels. J Vis Exp.
Saleh, F., Carstairs, A., Etheridge, S. L., and Genever, P. (2016). Real-Time Analysis of Endogenous Wnt Signalling in 3D Mesenchymal Stromal Cells. Stem Cells Int 2016, 7132529.
Severn, C. E., Macedo, H., Eagle, M. J., Rooney, P., Mantalaris, A., and Toye, A. M. (2016). Polyurethane scaffolds seeded with CD34(+) cells maintain early stem cells whilst also facilitating prolonged egress of haematopoietic progenitors. Sci Rep 6, 32149.
Shi, W., Huang, C. J., Xu, X. D., Jin, G. H., Huang, R. Q., Huang, J. F., Chen, Y. N., Ju, S. Q., Wang, Y., Shi, Y. W., et al. (2016). Transplantation of RADA16-BDNF peptide scaffold with human umbilical cord mesenchymal stem cells forced with CXCR4 and activated astrocytes for repair of traumatic brain injury. Acta Biomater.
Sirenko, O., Hancock, M. K., Hesley, J., Hong, D., Cohen, A., Gentry, J., Carlson, C. B., and Mann, D. A. (2016). Phenotypic Characterization of Toxic Compound Effects on Liver Spheroids Derived from iPSC Using Confocal Imaging and Three-Dimensional Image Analysis. Assay Drug Dev Technol 14, 381-394.
Soffer-Tsur, N., Peer, D., and Dvir, T. (2016). ECM-based macroporous sponges release essential factors to support the growth of hematopoietic cells. J Control Release.
Uzun, A. U., Mannhardt, I., Breckwoldt, K., Horvath, A., Johannsen, S. S., Hansen, A., Eschenhagen, T., and Christ, T. (2016). Ca(2+)-Currents in Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes Effects of Two Different Culture Conditions. Front Pharmacol 7, 300.
Wang, B., Jakus, A. E., Baptista, P. M., Soker, S., Soto-Gutierrez, A., Abecassis, M. M., Shah, R. N., and Wertheim, J. A. (2016a). Functional Maturation of Induced Pluripotent Stem Cell Hepatocytes in Extracellular Matrix-A Comparative Analysis of Bioartificial Liver Microenvironments. Stem Cells Transl Med 5, 1257-1267.
Wang, P. Y., Thissen, H., and Kingshott, P. (2016b). Modulation of human multipotent and pluripotent stem cells using surface nanotopographies and surface-immobilised bioactive signals: A review. Acta Biomater.
Stromal Cells
Arjmand, F., Khanmohammadi, M., Arasteh, S., Mohammadzadeh, A., Kazemnejad, S., and Akhondi, M. M. (2016). Extended Culture of Encapsulated Human Blastocysts in Alginate Hydrogel Containing Decidualized Endometrial Stromal Cells in the Presence of Melatonin. Mol Biotechnol 58, 684-694.
Borg, D. J., Welzel, P. B., Grimmer, M., Friedrichs, J., Weigelt, M., Wilhelm, C., Prewitz, M., Stissel, A., Hommel, A., Kurth, T., et al. (2016). Macroporous biohybrid cryogels for co-housing pancreatic islets with mesenchymal stromal cells. Acta Biomater 44, 178-187.
Jakubikova, J., Cholujova, D., Hideshima, T., Gronesova, P., Soltysova, A., Harada, T., Joo, J., Kong, S. Y., Szalat, R. E., Richardson, P. G., et al. (2016). A novel 3D mesenchymal stem cell model of the multiple myeloma bone marrow niche: biologic and clinical applications. Oncotarget.
Jiang, Z., Song, Q., Tang, M., Yang, L., Cheng, Y., Zhang, M., Xu, D., and Cheng, G. (2016). Enhanced Migration of Neural Stem Cells by Microglia Grown on a Three-Dimensional Graphene Scaffold. ACS Appl Mater Interfaces 8, 25069-25077.
Saleh, F., Carstairs, A., Etheridge, S. L., and Genever, P. (2016). Real-Time Analysis of Endogenous Wnt Signalling in 3D Mesenchymal Stromal Cells. Stem Cells Int 2016, 7132529.
Xue, C., Xie, J., Zhao, D., Lin, S., Zhou, T., Shi, S., Shao, X., Lin, Y., Zhu, B., and Cai, X. (2016). The JAK/STAT3 signalling pathway regulated angiogenesis in an endothelial cell/adipose-derived stromal cell co-culture, 3D gel model. Cell Prolif.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016a). 3D Bioprinting a Cell-laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016b). 3D Bioprinting a Cell-Laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Cancer/Tumor
Aihara, A., Abe, N., Saruhashi, K., Kanaki, T., and Nishino, T. (2016). A Novel 3-D Cell Culture System for In Vitro Evaluation of Anticancer Drugs under Anchorage-Independent Conditions. Cancer Sci.
Allen, E. L., Ulanet, D. B., Pirman, D., Mahoney, C. E., Coco, J., Si, Y., Chen, Y., Huang, L., Ren, J., Choe, S., et al. (2016). Differential Aspartate Usage Identifies a Subset of Cancer Cells Particularly Dependent on OGDH. Cell Rep 17, 876-890.
Amaral, A. J., and Pasparakis, G. (2016). Rapid Formation of Cell Aggregates and Spheroids Induced by a "Smart" Boronic Acid Copolymer. ACS Appl Mater Interfaces 8, 22930-22941.
Arai, K., Eguchi, T., Rahman, M. M., Sakamoto, R., Masuda, N., Nakatsura, T., Calderwood, S. K., Kozaki, K., and Itoh, M. (2016). A Novel High-Throughput 3D Screening System for EMT Inhibitors: A Pilot Screening Discovered the EMT Inhibitory Activity of CDK2 Inhibitor SU9516. PLoS One 11, e0162394.
Arya, A. D., Hallur, P. M., Karkisaval, A. G., Gudipati, A., Rajendiran, S., Dhavale, V., Ramachandran, B., Jayaprakash, A., Gundiah, N., and Chaubey, A. (2016). Gelatin Methacrylate Hydrogels as Biomimetic Three-Dimensional Matrixes for Modeling Breast Cancer Invasion and Chemoresponse in Vitro. ACS Appl Mater Interfaces 8, 22005-22017.
Backer, A., Erhardt, O., Wietbrock, L., Schel, N., Goppert, B., Abaffy, P., Sollich, T., Cecilia, A., and Gruhl, F. J. (2016). Silk scaffolds connected with different naturally occurring biomaterials for prostate cancer cell cultivation in 3D. Biopolymers.
Bartfeld, S. (2016). Modeling infectious diseases and host-microbe interactions in gastrointestinal organoids. Dev Biol.
Bhatia, M., Lovitt, C. J., Raninga, P. V., Avery, V. M., Di Trapani, G., and Tonissen, K. F. (2016). Expression of the thioredoxin system in an in vivo-like cancer cell environment upon auranofin treatment. Eur J Cell Biol 95, 378-388.
Booij, T. H., Klop, M. J., Yan, K., Szantai-Kis, C., Szokol, B., Orfi, L., van de Water, B., Keri, G., and Price, L. S. (2016). Development of a 3D Tissue Culture-Based High-Content Screening Platform That Uses Phenotypic Profiling to Discriminate Selective Inhibitors of Receptor Tyrosine Kinases. J Biomol Screen 21, 912-922.
Broutier, L., Andersson-Rolf, A., Hindley, C. J., Boj, S. F., Clevers, H., Koo, B. K., and Huch, M. (2016). Culture and establishment of self-renewing human and mouse adult liver and pancreas 3D organoids and their genetic manipulation. Nat Protoc 11, 1724-1743.
Carvalho, M. P., Costa, E. C., Miguel, S. P., and Correia, I. J. (2016). Tumor spheroid assembly on hyaluronic acid-based structures: A review. Carbohydr Polym 150, 139-148.
Cepeda, M. A., Pelling, J. J., Evered, C. L., Williams, K. C., Freedman, Z., Stan, I., Willson, J. A., Leong, H. S., and Damjanovski, S. (2016). Less is more: low expression of MT1-MMP is optimal to promote migration and tumourigenesis of breast cancer cells. Mol Cancer 15, 65.
Chatzinikolaidou, M. (2016). Cell spheroids: the new frontiers in in vitro models for cancer drug validation. Drug Discov Today 21, 1553-1560.
Dai, X., Ma, C., Lan, Q., and Xu, T. (2016). 3D bioprinted glioma stem cells for brain tumor model and applications of drug susceptibility. Biofabrication 8, 045005.
Diermeier, S. D., Chang, K. C., Freier, S. M., Song, J., El Demerdash, O., Krasnitz, A., Rigo, F., Bennett, C. F., and Spector, D. L. (2016). Mammary Tumor-Associated RNAs Impact Tumor Cell Proliferation, Invasion, and Migration. Cell Rep 17, 261-274.
Dong, W., Lu, A., Zhao, J., Yin, S., Ou, B., and Feng, H. (2016). An efficient and simple co-culture method for isolating primary human hepatic cells: Potential application for tumor microenvironment research. Oncol Rep 36, 2126-2134.
Eder, T., Weber, A., Neuwirt, H., Grunbacher, G., Ploner, C., Klocker, H., Sampson, N., and Eder, I. E. (2016). Cancer-Associated Fibroblasts Modify the Response of Prostate Cancer Cells to Androgen and Anti-Androgens in Three-Dimensional Spheroid Culture. Int J Mol Sci 17.
Fitzgerald, K. A., Guo, J., Raftery, R. M., Castano, I. M., Curtin, C. M., Gooding, M., Darcy, R., FJ, O. B., and CM, O. D. (2016). Nanoparticle-mediated siRNA delivery assessed in a 3D co-culture model simulating prostate cancer bone metastasis. Int J Pharm 511, 1058-1069.
Fong, E. L., Harrington, D. A., Farach-Carson, M. C., and Yu, H. (2016). Heralding a new paradigm in 3D tumor modeling. Biomaterials 108, 197-213.
Gao, Q., Wang, Z. C., Duan, M., Lin, Y. H., Zhou, X. Y., Worthley, D. L., Wang, X. Y., Niu, G., Xia, Y., Deng, M., et al. (2016). Cell Culture System for Analysis of Genetic Heterogeneity Within Hepatocellular Carcinomas and Response to Pharmacologic Agents. Gastroenterology.
Gomes, A., Guillaume, L., Grimes, D. R., Fehrenbach, J., Lobjois, V., and Ducommun, B. (2016). Oxygen Partial Pressure Is a Rate-Limiting Parameter for Cell Proliferation in 3D Spheroids Grown in Physioxic Culture Condition. PLoS One 11, e0161239.
Gomez-Roman, N., Stevenson, K., Gilmour, L., Hamilton, G., and Chalmers, A. J. (2016). A novel 3D human glioblastoma cell culture system for modeling drug and radiation responses. Neuro Oncol.
Gorgun, C., Ozturk, S., Gokalp, S., Vatansever, S., Gurhan, S. I., and Urkmez, A. S. (2016). Synergistic role of three dimensional niche and hypoxia on conservation of cancer stem cell phenotype. Int J Biol Macromol 90, 20-26.
Han, H. W., and Hsu, S. H. (2016). Chitosan-hyaluronan based 3D co-culture platform for studying the crosstalk of lung cancer cells and mesenchymal stem cells. Acta Biomater 42, 157-167.
Hansen, M., Met, O., Larsen, N. B., Rosenkilde, M. M., Andersen, M. H., Svane, I. M., and Hjorto, G. M. (2016). Autocrine CCL19 blocks dendritic cell migration toward weak gradients of CCL21. Cytotherapy 18, 1187-1196.
Hao, Y., Zerdoum, A. B., Stuffer, A. J., Rajasekaran, A. K., and Jia, X. (2016). Biomimetic Hydrogels Incorporating Polymeric Cell-Adhesive Peptide to Promote the 3D Assembly of Tumoroids. Biomacromolecules.
Hibiya, S., Tsuchiya, K., Hayashi, R., Fukushima, K., Horita, N., Watanabe, S., Shirasaki, T., Nishimura, R., Kimura, N., Nishimura, T., et al. (2016). Long-term inflammation transforms intestinal epithelial cells of colonic organoids. J Crohns Colitis.
Horvath, P., Aulner, N., Bickle, M., Davies, A. M., Nery, E. D., Ebner, D., Montoya, M. C., Ostling, P., Pietiainen, V., Price, L. S., et al. (2016). Screening out irrelevant cell-based models of disease. Nat Rev Drug Discov.
Ishiguro, S., Cai, S., Uppalapati, D., Turner, K., Zhang, T., Forrest, W. C., Forrest, M. L., and Tamura, M. (2016). Intratracheal Administration of Hyaluronan-Cisplatin Conjugate Nanoparticles Significantly Attenuates Lung Cancer Growth in Mice. Pharm Res 33, 2517-2529.
Ivanov, D. P., Coyle, B., Walker, D. A., and Grabowska, A. M. (2016). In vitro models of medulloblastoma: Choosing the right tool for the job. J Biotechnol 236, 10-25.
Jakubikova, J., Cholujova, D., Hideshima, T., Gronesova, P., Soltysova, A., Harada, T., Joo, J., Kong, S. Y., Szalat, R. E., Richardson, P. G., et al. (2016). A novel 3D mesenchymal stem cell model of the multiple myeloma bone marrow niche: biologic and clinical applications. Oncotarget.
Jang, J. W., Song, Y., Kim, K. M., Kim, J. S., Choi, E. K., Kim, J., and Seo, H. (2016). Hepatocellular carcinoma-targeted drug discovery through image-based phenotypic screening in co-cultures of HCC cells with hepatocytes. BMC Cancer 16, 810.
Jarde, T., Lloyd-Lewis, B., Thomas, M., Kendrick, H., Melchor, L., Bougaret, L., Watson, P. D., Ewan, K., Smalley, M. J., and Dale, T. C. (2016). Wnt and Neuregulin1/ErbB signalling extends 3D culture of hormone responsive mammary organoids. Nat Commun 7, 13207.
Jung, J. P., Bhuiyan, D. B., and Ogle, B. M. (2016). Solid organ fabrication: comparison of decellularization to 3D bioprinting. Biomater Res 20, 27.
Kaur, G., Willsmore, T., Gulati, K., Zinonos, I., Wang, Y., Kurian, M., Hay, S., Losic, D., and Evdokiou, A. (2016). Titanium wire implants with nanotube arrays: A study model for localized cancer treatment. Biomaterials 101, 176-188.
Kelley, M. R., Wikel, J. H., Guo, C., Pollok, K. E., Bailey, B. J., Wireman, R., Fishel, M. L., and Vasko, M. R. (2016). Identification of new chemical entities targeting APE1 for the prevention of chemotherapy-induced peripheral neuropathy (CIPN). J Pharmacol Exp Ther.
Koumarianou, P., Gomez-Lopez, G., and Santisteban, P. (2016). Pax8 controls thyroid follicular polarity through Cadherin-16. J Cell Sci.
Lee, G. H., Park, Y. E., Cho, M., Park, H., and Park, J. Y. (2016). Magnetic force-assisted self-locking metallic bead array for fabrication of diverse concave microwell geometries. Lab Chip 16, 3565-3575.
Li, L., Chen, J., Xiong, G., St Clair, D. K., Xu, W., and Xu, R. (2016a). Increased ROS production in non-polarized mammary epithelial cells induces monocyte infiltration in 3D culture. J Cell Sci.
Li, Z., Araoka, T., Wu, J., Liao, H. K., Li, M., Lazo, M., Zhou, B., Sui, Y., Wu, M. Z., Tamura, I., et al. (2016b). 3D Culture Supports Long-Term Expansion of Mouse and Human Nephrogenic Progenitors. Cell Stem Cell 19, 516-529.
Liu, W., Tian, C., Yan, M., Zhao, L., Ma, C., Li, T., Xu, J., and Wang, J. (2016a). Heterotypic 3D tumor culture in a reusable platform using pneumatic microfluidics. Lab Chip.
Liu, W., Tian, C., Yan, M., Zhao, L., Ma, C., Li, T., Xu, J., and Wang, J. (2016b). Heterotypic 3D tumor culture in a reusable platform using pneumatic microfluidics. Lab Chip 16, 4106-4120.
Lovitt, C. J., Shelper, T. B., and Avery, V. M. (2016). Cancer drug discovery: recent innovative approaches to tumor modeling. Expert Opin Drug Discov 11, 885-894.
Marshall, L. E., Koomullil, R., Frost, A. R., and Berry, J. L. (2016). Computational and Experimental Analysis of Fluid Transport Through Three-Dimensional Collagen-Matrigel Hydrogels. Ann Biomed Eng.
Marusyk, A., Tabassum, D., Janiszewska, M., Place, A., Trinh, A., Rozhok, A. I., Pyne, S., Guerriero, J., Shu, S., Ekram, M., et al. (2016). Spatial proximity to fibroblasts impacts molecular features and therapeutic sensitivity of breast cancer cells influencing clinical outcomes. Cancer Res.
Matte, I., Legault, C. M., Garde-Granger, P., Laplante, C., Bessette, P., Rancourt, C., and Piche, A. (2016). Mesothelial cells interact with tumor cells for the formation of ovarian cancer multicellular spheroids in peritoneal effusions. Clin Exp Metastasis.
McMillan, K. S., Boyd, M., and Zagnoni, M. (2016). Transitioning from multi-phase to single-phase microfluidics for long-term culture and treatment of multicellular spheroids. Lab Chip 16, 3548-3557.
Miyake, M., Hori, S., Morizawa, Y., Tatsumi, Y., Nakai, Y., Anai, S., Torimoto, K., Aoki, K., Tanaka, N., Shimada, K., et al. (2016). CXCL1-Mediated Interaction of Cancer Cells with Tumor-Associated Macrophages and Cancer-Associated Fibroblasts Promotes Tumor Progression in Human Bladder Cancer. Neoplasia 18, 636-646.
Nguyen, P. H., Giraud, J., Staedel, C., Chambonnier, L., Dubus, P., Chevret, E., Boeuf, H., Gauthereau, X., Rousseau, B., Fevre, M., et al. (2016). All-trans retinoic acid targets gastric cancer stem cells and inhibits patient-derived gastric carcinoma tumor growth. Oncogene 35, 5619-5628.
Niehoff, A. C., Grunebaum, J., Moosmann, A., Mulac, D., Sobbing, J., Niehaus, R., Buchholz, R., Kroger, S., Wiehe, A., Wagner, S., et al. (2016). Quantitative bioimaging of platinum group elements in tumor spheroids. Anal Chim Acta 938, 106-113.
Nyga, A., Neves, J., Stamati, K., Loizidou, M., Emberton, M., and Cheema, U. (2016). The next level of 3D tumour models: immunocompetence. Drug Discov Today 21, 1421-1428.
Perico, M. E., Grasso, S., Brunelli, M., Martignoni, G., Munari, E., Moiso, E., Fracasso, G., Cestari, T., Naim, H. Y., Bronte, V., et al. (2016). Prostate-specific membrane antigen (PSMA) assembles a macromolecular complex regulating growth and survival of prostate cancer cells "in vitro" and correlating with progression "in vivo". Oncotarget.
Pradhan, S., Hassani, I., Seeto, W. J., and Lipke, E. A. (2016). PEG-fibrinogen Hydrogels for Three-dimensional Breast Cancer Cell Culture. J Biomed Mater Res A.
Priwitaningrum, D. L., Blonde, J. G., Sridhar, A., van Baarlen, J., Hennink, W. E., Storm, G., Le Gac, S., and Prakash, J. (2016). Tumor stroma-containing 3D spheroid arrays: A tool to study nanoparticle penetration. J Control Release.
Qin, Y., Roszik, J., Chattopadhyay, C., Hashimoto, Y., Liu, C., Cooper, Z. A., Wargo, J. A., Hwu, P., Ekmekcioglu, S., and Grimm, E. A. (2016). Hypoxia-Driven Mechanism of Vemurafenib Resistance in Melanoma. Mol Cancer Ther 15, 2442-2454.
Ravi, M., Ramesh, A., and Pattabhi, A. (2016). Contributions of 3D Cell Cultures For Cancer Research. J Cell Physiol.
Rossetti, S., Bshara, W., Reiners, J. A., Corlazzoli, F., Miller, A., and Sacchi, N. (2016a). Harnessing 3D models of mammary epithelial morphogenesis: An off the beaten path approach to identify candidate biomarkers of early stage breast cancer. Cancer Lett 380, 375-383.
Rossetti, S., Wierzbicki, A. J., and Sacchi, N. (2016b). Mammary epithelial morphogenesis and early breast cancer. Evidence of involvement of basal components of the RNA Polymerase I transcription machinery. Cell Cycle 15, 2515-2526.
Roudsari, L. C., Jeffs, S. E., Witt, A. S., Gill, B. J., and West, J. L. (2016). A 3D Poly(ethylene glycol)-based Tumor Angiogenesis Model to Study the Influence of Vascular Cells on Lung Tumor Cell Behavior. Sci Rep 6, 32726.
Salamanna, F., Borsari, V., Brogini, S., Giavaresi, G., Parrilli, A., Cepollaro, S., Cadossi, M., Martini, L., Mazzotti, A., and Fini, M. (2016). An in vitro 3D bone metastasis model by using a human bone tissue culture and human sex-related cancer cells. Oncotarget.
Shelper, T. B., Lovitt, C. J., and Avery, V. M. (2016). Assessing Drug Efficacy in a Miniaturized Pancreatic Cancer In Vitro 3D Cell Culture Model. Assay Drug Dev Technol 14, 367-380.
Stankevicius, V., Vasauskas, G., Bulotiene, D., Butkyte, S., Jarmalaite, S., Rotomskis, R., and Suziedelis, K. (2016a). Gene and miRNA expression signature of Lewis lung carcinoma LLC1 cells in extracellular matrix enriched microenvironment. BMC Cancer 16, 789.
Stankevicius, V., Vasauskas, G., Noreikiene, R., Kuodyte, K., Valius, M., and Suziedelis, K. (2016b). Extracellular Matrix-dependent Pathways in Colorectal Cancer Cell Lines Reveal Potential Targets for Anticancer Therapies. Anticancer Res 36, 4559-4567.
Takai, K., Le, A., Weaver, V. M., and Werb, Z. (2016). Targeting the cancer-associated fibroblasts as a treatment in triple-negative breast cancer. Oncotarget.
Teixeira, S. F., de Azevedo, R. A., Silva, A. C., Braga, R. C., Jorge, S. D., Barbuto, J. A., Andrade, C. H., and Ferreira, A. K. (2016). Evaluation of cytotoxic effect of the combination of a pyridinyl carboxamide derivative and oxaliplatin on NCI-H1299 human non-small cell lung carcinoma cells. Biomed Pharmacother 84, 1019-1028.
Ushijima, H., Horyozaki, A., and Maeda, M. (2016). Anisomycin-induced GATA-6 degradation accompanying a decrease of proliferation of colorectal cancer cell. Biochem Biophys Res Commun 478, 481-485.
Walker, S., Foster, F., Wood, A., Owens, T., Brennan, K., Streuli, C. H., and Gilmore, A. P. (2016). Oncogenic activation of FAK drives apoptosis suppression in a 3D-culture model of breast cancer initiation. Oncotarget.
Wang, M., Nagle, R. B., Knudsen, B. S., Rogers, G. C., and Cress, A. E. (2016). A basal cell defect promotes budding of prostatic intraepithelial neoplasia. J Cell Sci.
Ware, M. J., Keshishian, V., Law, J. J., Ho, J. C., Favela, C. A., Rees, P., Smith, B., Mohammad, S., Hwang, R. F., Rajapakshe, K., et al. (2016). Generation of an in vitro 3D PDAC stroma rich spheroid model. Biomaterials 108, 129-142.
Yue, X., Lukowski, J. K., Weaver, E. M., Skube, S. B., and Hummon, A. B. (2016). Quantitative Proteomic and Phosphoproteomic Comparison of 2D and 3D Colon Cancer Cell Culture Models. J Proteome Res.
Zhang, W., Li, C., Baguley, B. C., Zhou, F., Zhou, W., Shaw, J. P., Wang, Z., Wu, Z., and Liu, J. (2016). Optimization of the formation of embedded multicellular spheroids of MCF-7 cells: How to reliably produce a biomimetic 3D model. Anal Biochem.
Zhou, L., Yang, K., Wickett, R. R., Kadekaro, A. L., and Zhang, Y. (2016a). Targeted deactivation of cancer-associated fibroblasts by beta-catenin ablation suppresses melanoma growth. Tumour Biol.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016b). 3D Bioprinting a Cell-laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016c). 3D Bioprinting a Cell-Laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Screening
Aihara, A., Abe, N., Saruhashi, K., Kanaki, T., and Nishino, T. (2016). A Novel 3-D Cell Culture System for In Vitro Evaluation of Anticancer Drugs under Anchorage-Independent Conditions. Cancer Sci.
Arai, K., Eguchi, T., Rahman, M. M., Sakamoto, R., Masuda, N., Nakatsura, T., Calderwood, S. K., Kozaki, K., and Itoh, M. (2016). A Novel High-Throughput 3D Screening System for EMT Inhibitors: A Pilot Screening Discovered the EMT Inhibitory Activity of CDK2 Inhibitor SU9516. PLoS One 11, e0162394.
Booij, T. H., Klop, M. J., Yan, K., Szantai-Kis, C., Szokol, B., Orfi, L., van de Water, B., Keri, G., and Price, L. S. (2016). Development of a 3D Tissue Culture-Based High-Content Screening Platform That Uses Phenotypic Profiling to Discriminate Selective Inhibitors of Receptor Tyrosine Kinases. J Biomol Screen 21, 912-922.
Cairns, D. M., Chwalek, K., Moore, Y. E., Kelley, M. R., Abbott, R. D., Moss, S., and Kaplan, D. L. (2016). Expandable and Rapidly Differentiating Human Induced Neural Stem Cell Lines for Multiple Tissue Engineering Applications. Stem Cell Reports 7, 557-570.
Carvalho, M. P., Costa, E. C., Miguel, S. P., and Correia, I. J. (2016). Tumor spheroid assembly on hyaluronic acid-based structures: A review. Carbohydr Polym 150, 139-148.
Gao, Q., Wang, Z. C., Duan, M., Lin, Y. H., Zhou, X. Y., Worthley, D. L., Wang, X. Y., Niu, G., Xia, Y., Deng, M., et al. (2016). Cell Culture System for Analysis of Genetic Heterogeneity Within Hepatocellular Carcinomas and Response to Pharmacologic Agents. Gastroenterology.
Han, H. W., and Hsu, S. H. (2016). Chitosan-hyaluronan based 3D co-culture platform for studying the crosstalk of lung cancer cells and mesenchymal stem cells. Acta Biomater 42, 157-167.
Hao, Y., Zerdoum, A. B., Stuffer, A. J., Rajasekaran, A. K., and Jia, X. (2016). Biomimetic Hydrogels Incorporating Polymeric Cell-Adhesive Peptide to Promote the 3D Assembly of Tumoroids. Biomacromolecules.
Horvath, P., Aulner, N., Bickle, M., Davies, A. M., Nery, E. D., Ebner, D., Montoya, M. C., Ostling, P., Pietiainen, V., Price, L. S., et al. (2016). Screening out irrelevant cell-based models of disease. Nat Rev Drug Discov.
Jang, J. W., Song, Y., Kim, K. M., Kim, J. S., Choi, E. K., Kim, J., and Seo, H. (2016). Hepatocellular carcinoma-targeted drug discovery through image-based phenotypic screening in co-cultures of HCC cells with hepatocytes. BMC Cancer 16, 810.
Kamei, K. I., Koyama, Y., Tokunaga, Y., Mashimo, Y., Yoshioka, M., Fockenberg, C., Mosbergen, R., Korn, O., Wells, C., and Chen, Y. (2016). Characterization of Phenotypic and Transcriptional Differences in Human Pluripotent Stem Cells under 2D and 3D Culture Conditions. Adv Healthc Mater.
Leong, M. F., Lu, H. F., Lim, T. C., Du, C., Ma, N. K., and Wan, A. C. (2016). Electrospun polystyrene scaffolds as a synthetic substrate for xeno-free expansion and differentiation of human induced pluripotent stem cells. Acta Biomater.
McMillan, K. S., Boyd, M., and Zagnoni, M. (2016). Transitioning from multi-phase to single-phase microfluidics for long-term culture and treatment of multicellular spheroids. Lab Chip 16, 3548-3557.
Medda, X., Mertens, L., Versweyveld, S., Diels, A., Barnham, L., Bretteville, A., Buist, A., Verheyen, A., Royaux, I., Ebneth, A., and Cabrera-Socorro, A. (2016). Development of a Scalable, High-Throughput-Compatible Assay to Detect Tau Aggregates Using iPSC-Derived Cortical Neurons Maintained in a Three-Dimensional Culture Format. J Biomol Screen 21, 804-815.
Miranda, C. C., Fernandes, T. G., Diogo, M. M., and Cabral, J. M. (2016). Scaling Up a Chemically-Defined Aggregate-Based Suspension Culture System for Neural Commitment of Human Pluripotent Stem Cells. Biotechnol J.
Picollet-D'hahan, N., Dolega, M. E., Liguori, L., Marquette, C., Le Gac, S., Gidrol, X., and Martin, D. K. (2016). A 3D Toolbox to Enhance Physiological Relevance of Human Tissue Models. Trends Biotechnol 34, 757-769.
Shelper, T. B., Lovitt, C. J., and Avery, V. M. (2016). Assessing Drug Efficacy in a Miniaturized Pancreatic Cancer In Vitro 3D Cell Culture Model. Assay Drug Dev Technol 14, 367-380.
Shima, F., Narita, H., Hiura, A., Shimoda, H., and Akashi, M. (2016). Construction and histological analysis of a 3D human arterial wall model containing vasa vasorum using a layer-by-layer technique. J Biomed Mater Res A.
Sirenko, O., Hancock, M. K., Hesley, J., Hong, D., Cohen, A., Gentry, J., Carlson, C. B., and Mann, D. A. (2016). Phenotypic Characterization of Toxic Compound Effects on Liver Spheroids Derived from iPSC Using Confocal Imaging and Three-Dimensional Image Analysis. Assay Drug Dev Technol 14, 381-394.
Tanimizu, N., and Mitaka, T. (2016). Morphogenesis of liver epithelial cells. Hepatol Res 46, 964-976.
Terrasso, A. P., Silva, A. C., Filipe, A., Pedroso, P., Ferreira, A. L., Alves, P. M., and Brito, C. (2016). Human neuron-astrocyte 3D co-culture-based assay for evaluation of neuroprotective compounds. J Pharmacol Toxicol Methods 83, 72-79.
Ware, M. J., Keshishian, V., Law, J. J., Ho, J. C., Favela, C. A., Rees, P., Smith, B., Mohammad, S., Hwang, R. F., Rajapakshe, K., et al. (2016). Generation of an in vitro 3D PDAC stroma rich spheroid model. Biomaterials 108, 129-142.
Wills, J. W., Hondow, N., Thomas, A. D., Chapman, K. E., Fish, D., Maffeis, T. G., Penny, M. W., Brown, R. A., Jenkins, G. J., Brown, A. P., et al. (2016). Genetic toxicity assessment of engineered nanoparticles using a 3D in vitro skin model (EpiDerm). Part Fibre Toxicol 13, 50.
Wollrab, V., Caballero, D., Thiagarajan, R., and Riveline, D. (2016). Ordering Single Cells and Single Embryos in 3D Confinement: A New Device for High Content Screening. J Vis Exp.
Zhao, J., Zeng, Z., Sun, J., Zhang, Y., Li, D., Zhang, X., Liu, M., and Wang, X. (2016). A Novel Model of P-Glycoprotein Inhibitor Screening Using Human Small Intestinal Organoids. Basic Clin Pharmacol Toxicol.
3D Bioprinting
Arai, K., Yoshida, T., Okabe, M., Goto, M., Mir, T. A., Soko, C., Tsukamoto, Y., Akaike, T., Nikaido, T., Zhou, K., and Nakamura, M. (2016). Fabrication of 3D-culture platform with sandwich architecture for preserving liver-specific functions of hepatocytes using 3D bioprinter. J Biomed Mater Res A.
Brooks, J. C., Ford, K. I., Holder, D. H., Holtan, M. D., and Easley, C. J. (2016). Macro-to-micro interfacing to microfluidic channels using 3D-printed templates: application to time-resolved secretion sampling of endocrine tissue. Analyst 141, 5714-5721.
Chen, C., Mehl, B. T., Sell, S. A., and Martin, R. S. (2016). Use of electrospinning and dynamic air focusing to create three-dimensional cell culture scaffolds in microfluidic devices. Analyst 141, 5311-5320.
Connell, J. L., Ritschdorff, E. T., and Shear, J. B. (2016). 3D Printing of Photoresponsive Biomaterials for Control of Bacterial Microenvironments. Anal Chem.
Dai, X., Ma, C., Lan, Q., and Xu, T. (2016). 3D bioprinted glioma stem cells for brain tumor model and applications of drug susceptibility. Biofabrication 8, 045005.
Fan, R., Piou, M., Darling, E., Cormier, D., Sun, J., and Wan, J. (2016). Bio-printing cell-laden Matrigel-agarose constructs. J Biomater Appl.
Flood, P., Alvarez, L., and Reynaud, E. G. (2016). Free-floating epithelial micro-tissue arrays: a low cost and versatile technique. Biofabrication 8, 045006.
Hinton, T. J., Hudson, A., Pusch, K., Lee, A., and Feinberg, A. W. (2016). 3D Printing PDMS Elastomer in a Hydrophilic Support Bath via Freeform Reversible Embedding. ACS Biomater Sci Eng 2, 1781-1786.
Irvine, S. A., and Venkatraman, S. S. (2016). Bioprinting and Differentiation of Stem Cells. Molecules 21.
Jung, J. P., Bhuiyan, D. B., and Ogle, B. M. (2016). Solid organ fabrication: comparison of decellularization to 3D bioprinting. Biomater Res 20, 27.
Kingsley, D. M., Dias, A. D., and Corr, D. T. (2016). Microcapsules and 3D customizable shelled microenvironments from laser direct-written microbeads. Biotechnol Bioeng 113, 2264-2274.
Li, S., Liu, Y. Y., Liu, L. J., and Hu, Q. X. (2016). A Versatile Method for Fabricating Tissue Engineering Scaffolds with a Three-Dimensional Channel for Prevasculature Networks. ACS Appl Mater Interfaces 8, 25096-25103.
Liu, N., Huang, S., Yao, B., Xie, J., Wu, X., and Fu, X. (2016). 3D bioprinting matrices with controlled pore structure and release function guide in vitro self-organization of sweat gland. Sci Rep 6, 34410.
Norona, L. M., Nguyen, D. G., Gerber, D. A., Presnell, S. C., and LeCluyse, E. L. (2016). Modeling Compound-Induced Fibrogenesis In Vitro Using Three-Dimensional Bioprinted Human Liver Tissues. Toxicol Sci.
Ouyang, L., Yao, R., Zhao, Y., and Sun, W. (2016). Effect of bioink properties on printability and cell viability for 3D bioplotting of embryonic stem cells. Biofabrication 8, 035020.
Yeh, Y. C., Highley, C. B., Ouyang, L., and Burdick, J. A. (2016). 3D printing of photocurable poly(glycerol sebacate) elastomers. Biofabrication 8, 045004.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016a). 3D Bioprinting a Cell-laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Zhou, X., Zhu, W., Nowicki, M., Miao, S., Cui, H., Holmes, B., Glazer, R. I., and Zhang, L. G. (2016b). 3D Bioprinting a Cell-Laden Bone Matrix for Breast Cancer Metastasis Study. ACS Appl Mater Interfaces.
Imaging
Arai, K., Eguchi, T., Rahman, M. M., Sakamoto, R., Masuda, N., Nakatsura, T., Calderwood, S. K., Kozaki, K., and Itoh, M. (2016). A Novel High-Throughput 3D Screening System for EMT Inhibitors: A Pilot Screening Discovered the EMT Inhibitory Activity of CDK2 Inhibitor SU9516. PLoS One 11, e0162394.
Bradley, R. S., Robinson, I. K., and Yusuf, M. (2016). 3D X-Ray Nanotomography of Cells Grown on Electrospun Scaffolds. Macromol Biosci.
Cepeda, M. A., Pelling, J. J., Evered, C. L., Williams, K. C., Freedman, Z., Stan, I., Willson, J. A., Leong, H. S., and Damjanovski, S. (2016). Less is more: low expression of MT1-MMP is optimal to promote migration and tumourigenesis of breast cancer cells. Mol Cancer 15, 65.
Chen, C., Mehl, B. T., Sell, S. A., and Martin, R. S. (2016). Use of electrospinning and dynamic air focusing to create three-dimensional cell culture scaffolds in microfluidic devices. Analyst 141, 5311-5320.
Deharde, D., Schneider, C., Hiller, T., Fischer, N., Kegel, V., Lubberstedt, M., Freyer, N., Hengstler, J. G., Andersson, T. B., Seehofer, D., et al. (2016). Bile canaliculi formation and biliary transport in 3D sandwich-cultured hepatocytes in dependence of the extracellular matrix composition. Arch Toxicol 90, 2497-2511.
Fan, R., Piou, M., Darling, E., Cormier, D., Sun, J., and Wan, J. (2016). Bio-printing cell-laden Matrigel-agarose constructs. J Biomater Appl.
Horvath, P., Aulner, N., Bickle, M., Davies, A. M., Nery, E. D., Ebner, D., Montoya, M. C., Ostling, P., Pietiainen, V., Price, L. S., et al. (2016). Screening out irrelevant cell-based models of disease. Nat Rev Drug Discov.
Hoshi, K., Fujihara, Y., Mori, Y., Asawa, Y., Kanazawa, S., Nishizawa, S., Misawa, M., Numano, T., Inoue, H., Sakamoto, T., et al. (2016). Production of three-dimensional tissue-engineered cartilage through mutual fusion of chondrocyte pellets. Int J Oral Maxillofac Surg 45, 1177-1185.
Jakob, P. H., Kehrer, J., Flood, P., Wiegel, C., Haselmann, U., Meissner, M., Stelzer, E. H., and Reynaud, E. G. (2016). A 3-D cell culture system to study epithelia functions using microcarriers. Cytotechnology 68, 1813-1825.
Jang, J. W., Song, Y., Kim, K. M., Kim, J. S., Choi, E. K., Kim, J., and Seo, H. (2016). Hepatocellular carcinoma-targeted drug discovery through image-based phenotypic screening in co-cultures of HCC cells with hepatocytes. BMC Cancer 16, 810.
Jenkins, J., Borisov, S. M., Papkovsky, D. B., and Dmitriev, R. I. (2016). Sulforhodamine nanothermometer for multi-parametric FLIM imaging. Anal Chem.
Jung, J. P., Bhuiyan, D. B., and Ogle, B. M. (2016). Solid organ fabrication: comparison of decellularization to 3D bioprinting. Biomater Res 20, 27.
Lovitt, C. J., Shelper, T. B., and Avery, V. M. (2016). Cancer drug discovery: recent innovative approaches to tumor modeling. Expert Opin Drug Discov 11, 885-894.
Marusyk, A., Tabassum, D., Janiszewska, M., Place, A., Trinh, A., Rozhok, A. I., Pyne, S., Guerriero, J., Shu, S., Ekram, M., et al. (2016). Spatial proximity to fibroblasts impacts molecular features and therapeutic sensitivity of breast cancer cells influencing clinical outcomes. Cancer Res.
Niehoff, A. C., Grunebaum, J., Moosmann, A., Mulac, D., Sobbing, J., Niehaus, R., Buchholz, R., Kroger, S., Wiehe, A., Wagner, S., et al. (2016). Quantitative bioimaging of platinum group elements in tumor spheroids. Anal Chim Acta 938, 106-113.
Priwitaningrum, D. L., Blonde, J. G., Sridhar, A., van Baarlen, J., Hennink, W. E., Storm, G., Le Gac, S., and Prakash, J. (2016). Tumor stroma-containing 3D spheroid arrays: A tool to study nanoparticle penetration. J Control Release.
Reese, S. P., Farhang, N., Poulson, R., Parkman, G., and Weiss, J. A. (2016). Nanoscale Imaging of Collagen Gels with Focused Ion Beam Milling and Scanning Electron Microscopy. Biophys J 111, 1797-1804.
Shelper, T. B., Lovitt, C. J., and Avery, V. M. (2016). Assessing Drug Efficacy in a Miniaturized Pancreatic Cancer In Vitro 3D Cell Culture Model. Assay Drug Dev Technol 14, 367-380.
Sirenko, O., Hancock, M. K., Hesley, J., Hong, D., Cohen, A., Gentry, J., Carlson, C. B., and Mann, D. A. (2016). Phenotypic Characterization of Toxic Compound Effects on Liver Spheroids Derived from iPSC Using Confocal Imaging and Three-Dimensional Image Analysis. Assay Drug Dev Technol 14, 381-394.
Westphal, I., Jedelhauser, C., Liebsch, G., Wilhelmi, A., Aszodi, A., and Schieker, M. (2016). Oxygen mapping: Probing a novel seeding strategy for bone tissue engineering. Biotechnol Bioeng.
Wills, J. W., Hondow, N., Thomas, A. D., Chapman, K. E., Fish, D., Maffeis, T. G., Penny, M. W., Brown, R. A., Jenkins, G. J., Brown, A. P., et al. (2016). Genetic toxicity assessment of engineered nanoparticles using a 3D in vitro skin model (EpiDerm). Part Fibre Toxicol 13, 50.
3D in Meetings
14th Annual High-Content Analysis & 3D Screening
Date: 31st October to 2nd November 2016
Location: Cambridge, MA, USA
Website: http://www.highcontentanalysis.com/
Contact person: Jaime Hodges
Event will deliver the latest advancements in HCA applications and technologies, and the next steps for physiologically relevant complex models, ultra-high resolution and high-throughput imaging, and more advanced image analysis and data management.
Organized by: Cambridge Healthtech Institute
SPIE BiOS 2017 - Part of SPIE Photonics West 2017
Date: 28th January to 2nd February 2017
Location: San Francisco, CA, USA
Website: http://spie.org/SPIE-BiOS-conference
Contact person: Customer Service
BiOS 2017, part of SPIE Photonics West 2017, is the world’s largest biomedical optics and biophotonics conference. Topics range from biomedical optics, photonic diagnostic and therapeutic tools and systems, nano/biophotonics, and more!
Organized by: SPIE - The international society for optics and photonics
Deadline for abstracts/proposals: 18th July 2016
3D Cell Culture 2017
Date: 2nd to 23rd February 2017
Location: London, United Kingdom
Website: https://go.evvnt.com/69495-0
Contact person: Honey de Gracia
Organized by: SMi Group
Deadline for abstracts/proposals: 21st February 2017
Keystone Symposia - Engineered Cells and Tissues as Platforms for Discovery and Therapy
Date: 9th to 12th March 2017
Location: Boston, Massachusetts, United States
Website: https://www.keystonesymposia.org/17K1
Contact person: Phone: 1 800-253-0685; Email: info@keystonesymposia.org
Organized by: Keystone Symposium