This model simulates replication dynamics of SARS-CoV-2 (coronavirus / COVID19) in a layer of epithelium. It is being rapidly prototyped and refined with community support.
In this model, SARS-CoV-2 (coronavirus / COVID19) infects a single cell, or a solution of virions is administered to the extracellular space. The virus is uncoated to explose viral RNA, which synthesizes viral proteins that are assembled into a virion. Assembled virions are exported to the environment, where they can diffuse and infect other cells. In the extracellular space, virions adhere to ACE2 receptors and get internalized through endocytosis. Internalized ACE2 receptors release their virus cargo and are recycled back to the surface.
The model includes a basic pharmacodynamic response (to assembled virions) to cause cell apoptosis. Apoptosed cells release some or all of their internal contents, notably including virions.
Try the app here.
Apps are standalone simulation tools run on nanoHUB's cloud. They range from simulations of behaviors of collections of nanoparticles smaller viruses up to the lifecycle and death of infected tissues.
Tools enable you to run your own models or create your own apps.
Frameworks are sophisticated software packages at the heart of many of nanoBIO apps and tools. These packages are available offline for the most sophisticated nanobio simulations available today.
Meet the core team.
Educational materials ranging from workshop talks to full curricular modules are available here.
Learn about which events we've attended and upcoming events where you will be able to find us.
Apps, tools, and supporting resources for COVID-19 research and education.
Check nanoBIO node at Urbana for the products of the former nanoBIO node.