1 | /* -*- mode: c++; c-basic-offset: 4; indent-tabs-mode: nil -*- */ |
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2 | /* |
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3 | * Copyright (C) 2004-2013 HUBzero Foundation, LLC |
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4 | * |
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5 | */ |
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6 | |
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7 | #include <iostream> |
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8 | #include <float.h> |
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9 | |
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10 | #include <vtkSmartPointer.h> |
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11 | #include <vtkDataSet.h> |
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12 | #include <vtkImageData.h> |
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13 | #include <vtkPointData.h> |
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14 | #include <vtkDataArray.h> |
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15 | #include <vtkDataSetReader.h> |
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16 | #include <vtkCharArray.h> |
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17 | |
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18 | #include <vrmath/Vector3f.h> |
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19 | |
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20 | #include "ReaderCommon.h" |
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21 | #include "DataSetResample.h" |
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22 | |
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23 | #include "config.h" |
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24 | #include "nanovis.h" |
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25 | #include "VtkDataSetReader.h" |
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26 | #include "Volume.h" |
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27 | #include "Trace.h" |
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28 | |
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29 | using namespace nv; |
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30 | |
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31 | Volume * |
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32 | nv::load_vtk_volume_stream(const char *tag, const char *bytes, int nBytes) |
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33 | { |
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34 | TRACE("Enter tag:%s", tag); |
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35 | |
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36 | vtkSmartPointer<vtkImageData> resampledDataSet; |
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37 | { |
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38 | vtkSmartPointer<vtkDataSet> dataSet; |
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39 | { |
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40 | vtkSmartPointer<vtkDataSetReader> reader = vtkSmartPointer<vtkDataSetReader>::New(); |
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41 | vtkSmartPointer<vtkCharArray> dataSetString = vtkSmartPointer<vtkCharArray>::New(); |
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42 | |
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43 | dataSetString->SetArray(const_cast<char *>(bytes), nBytes, 1); |
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44 | reader->SetInputArray(dataSetString); |
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45 | reader->ReadFromInputStringOn(); |
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46 | //reader->ReadAllNormalsOn(); |
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47 | //reader->ReadAllTCoordsOn(); |
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48 | reader->ReadAllScalarsOn(); |
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49 | //reader->ReadAllColorScalarsOn(); |
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50 | reader->ReadAllVectorsOn(); |
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51 | //reader->ReadAllTensorsOn(); |
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52 | reader->ReadAllFieldsOn(); |
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53 | reader->SetLookupTableName(""); |
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54 | reader->Update(); |
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55 | |
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56 | dataSet = reader->GetOutput(); |
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57 | } |
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58 | |
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59 | if (dataSet == NULL) |
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60 | return NULL; |
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61 | |
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62 | int maxDim = 64; |
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63 | |
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64 | resampledDataSet = vtkImageData::SafeDownCast(dataSet.GetPointer()); |
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65 | if (resampledDataSet != NULL) { |
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66 | // Have a uniform grid, check if we need to resample |
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67 | #ifdef DOWNSAMPLE_DATA |
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68 | if (resampledDataSet->GetDimensions()[0] > maxDim || |
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69 | resampledDataSet->GetDimensions()[1] > maxDim || |
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70 | resampledDataSet->GetDimensions()[2] > maxDim) { |
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71 | resampledDataSet = resampleVTKDataSet(dataSet, maxDim); |
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72 | } |
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73 | #endif |
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74 | } else { |
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75 | resampledDataSet = resampleVTKDataSet(dataSet, maxDim); |
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76 | } |
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77 | } |
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78 | |
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79 | int nx, ny, nz, npts; |
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80 | // origin |
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81 | double x0, y0, z0; |
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82 | // deltas (cell dimensions) |
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83 | double dx, dy, dz; |
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84 | // length of volume edges |
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85 | double lx, ly, lz; |
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86 | |
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87 | nx = resampledDataSet->GetDimensions()[0]; |
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88 | ny = resampledDataSet->GetDimensions()[1]; |
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89 | nz = resampledDataSet->GetDimensions()[2]; |
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90 | npts = nx * ny * nz; |
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91 | resampledDataSet->GetSpacing(dx, dy, dz); |
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92 | resampledDataSet->GetOrigin(x0, y0, z0); |
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93 | |
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94 | lx = (nx - 1) * dx; |
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95 | ly = (ny - 1) * dy; |
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96 | lz = (nz - 1) * dz; |
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97 | |
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98 | Volume *volume = NULL; |
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99 | double vmin = DBL_MAX; |
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100 | double nzero_min = DBL_MAX; |
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101 | double vmax = -DBL_MAX; |
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102 | |
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103 | float *data = new float[npts * 4]; |
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104 | memset(data, 0, npts * 4); |
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105 | |
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106 | bool isVectorData = (resampledDataSet->GetPointData()->GetVectors() != NULL); |
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107 | |
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108 | int ix = 0; |
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109 | int iy = 0; |
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110 | int iz = 0; |
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111 | vtkDataArray *mask = resampledDataSet->GetPointData()->GetArray("vtkValidPointMask"); |
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112 | for (int p = 0; p < npts; p++) { |
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113 | int nindex = p * 4; |
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114 | double val; |
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115 | int loc[3]; |
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116 | loc[0] = ix; loc[1] = iy; loc[2] = iz; |
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117 | vtkIdType idx = resampledDataSet->ComputePointId(loc); |
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118 | bool valid = (mask == NULL) ? true : (mask->GetComponent(idx, 0) != 0.0); |
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119 | if (isVectorData) { |
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120 | double vec[3]; |
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121 | resampledDataSet->GetPointData()->GetVectors()->GetTuple(idx, vec); |
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122 | val = sqrt(vec[0]*vec[0] + vec[1]*vec[1] + vec[2]*vec[2]); |
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123 | data[nindex] = (float)val; |
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124 | data[nindex+1] = (float)vec[0]; |
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125 | data[nindex+2] = (float)vec[1]; |
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126 | data[nindex+3] = (float)vec[2]; |
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127 | } else { |
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128 | //val = resampledDataSet->GetScalarComponentAsDouble(ix, iy, iz, 0); |
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129 | val = resampledDataSet->GetPointData()->GetScalars()->GetComponent(idx, 0); |
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130 | data[nindex] = valid ? (float)val : -FLT_MAX; |
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131 | } |
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132 | if (valid) { |
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133 | if (val < vmin) { |
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134 | vmin = val; |
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135 | } else if (val > vmax) { |
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136 | vmax = val; |
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137 | } |
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138 | if (val != 0.0 && val < nzero_min) { |
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139 | nzero_min = val; |
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140 | } |
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141 | } |
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142 | |
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143 | if (++ix >= nx) { |
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144 | ix = 0; |
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145 | if (++iy >= ny) { |
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146 | iy = 0; |
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147 | ++iz; |
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148 | } |
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149 | } |
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150 | } |
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151 | |
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152 | if (isVectorData) { |
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153 | // Normalize magnitude [0,1] and vector components [0,1] |
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154 | normalizeVector(data, npts, vmin, vmax); |
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155 | } else { |
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156 | // scale all values [0-1], -1 => out of bounds |
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157 | normalizeScalar(data, npts, 4, vmin, vmax); |
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158 | computeSimpleGradient(data, nx, ny, nz, |
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159 | dx, dy, dz); |
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160 | } |
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161 | |
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162 | TRACE("isVectorData: %s", isVectorData ? "yes" : "no"); |
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163 | TRACE("nx = %i ny = %i nz = %i", nx, ny, nz); |
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164 | TRACE("x0 = %lg y0 = %lg z0 = %lg", x0, y0, z0); |
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165 | TRACE("lx = %lg ly = %lg lz = %lg", lx, ly, lz); |
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166 | TRACE("dx = %lg dy = %lg dz = %lg", dx, dy, dz); |
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167 | TRACE("dataMin = %lg dataMax = %lg nzero_min = %lg", |
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168 | vmin, vmax, nzero_min); |
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169 | |
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170 | volume = NanoVis::loadVolume(tag, nx, ny, nz, 4, data, |
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171 | vmin, vmax, nzero_min); |
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172 | volume->xAxis.setRange(x0, x0 + lx); |
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173 | volume->yAxis.setRange(y0, y0 + ly); |
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174 | volume->zAxis.setRange(z0, z0 + lz); |
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175 | volume->updatePending = true; |
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176 | |
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177 | delete [] data; |
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178 | |
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179 | TRACE("Leave"); |
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180 | return volume; |
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181 | } |
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