1 | /* |
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2 | * |
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3 | * ********************************************************************* |
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4 | * (C) COPYRIGHT 1995 UNIVERSITY OF CHICAGO |
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5 | * ********************************************************************* |
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6 | * |
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7 | * This software was authored by |
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8 | * |
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9 | * D. Levine |
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10 | * Mathematics and Computer Science Division Argonne National Laboratory |
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11 | * Argonne IL 60439 |
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12 | * levine@mcs.anl.gov |
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13 | * (708) 252-6735 |
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14 | * (708) 252-5986 (FAX) |
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15 | * |
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16 | * with programming assistance of participants in Argonne National |
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17 | * Laboratory's SERS program. |
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18 | * |
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19 | * This program contains material protectable under copyright laws of the |
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20 | * United States. Permission is hereby granted to use it, reproduce it, |
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21 | * to translate it into another language, and to redistribute it to |
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22 | * others at no charge except a fee for transferring a copy, provided |
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23 | * that you conspicuously and appropriately publish on each copy the |
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24 | * University of Chicago's copyright notice, and the disclaimer of |
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25 | * warranty and Government license included below. Further, permission |
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26 | * is hereby granted, subject to the same provisions, to modify a copy or |
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27 | * copies or any portion of it, and to distribute to others at no charge |
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28 | * materials containing or derived from the material. |
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29 | * |
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30 | * The developers of the software ask that you acknowledge its use in any |
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31 | * document referencing work based on the program, such as published |
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32 | * research. Also, they ask that you supply to Argonne National |
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33 | * Laboratory a copy of any published research referencing work based on |
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34 | * the software. |
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35 | * |
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36 | * Any entity desiring permission for further use must contact: |
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37 | * |
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38 | * J. Gleeson |
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39 | * Industrial Technology Development Center Argonne National Laboratory |
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40 | * Argonne IL 60439 |
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41 | * gleesonj@smtplink.eid.anl.gov |
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42 | * (708) 252-6055 |
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43 | * |
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44 | * ******************************************************************** |
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45 | * DISCLAIMER |
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46 | * |
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47 | * THIS PROGRAM WAS PREPARED AS AN ACCOUNT OF WORK SPONSORED BY AN AGENCY |
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48 | * OF THE UNITED STATES GOVERNMENT. NEITHER THE UNIVERSITY OF CHICAGO, |
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49 | * THE UNITED STATES GOVERNMENT NOR ANY OF THEIR EMPLOYEES MAKE ANY |
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50 | * WARRANTY, EXPRESS OR IMPLIED, OR ASSUMES ANY LEGAL LIABILITY OR |
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51 | * RESPONSIBILITY FOR THE ACCURACY, COMPLETENESS, OR USEFULNESS OF ANY |
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52 | * INFORMATION OR PROCESS DISCLOSED, OR REPRESENTS THAT ITS USE WOULD NOT |
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53 | * INFRINGE PRIVATELY OWNED RIGHTS. |
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54 | * |
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55 | * ********************************************************************** |
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56 | * GOVERNMENT LICENSE |
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57 | * |
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58 | * The Government is granted for itself and others acting on its behalf a |
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59 | * paid-up, non-exclusive, irrevocable worldwide license in this computer |
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60 | * software to reproduce, prepare derivative works, and perform publicly |
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61 | * and display publicly. |
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62 | */ |
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63 | |
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64 | /***************************************************************************** |
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65 | * FILE: random.c: This file contains routines to generate randomness. |
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66 | * |
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67 | * Authors: David M. Levine, Philip L. Hallstrom, David M. Noelle, |
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68 | * Brian P. Walenz |
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69 | *****************************************************************************/ |
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70 | |
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71 | #include "pgapack.h" |
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72 | |
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73 | /*U**************************************************************************** |
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74 | PGARandomFlip - flip a biased coin and return PGA_TRUE if the coin is |
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75 | a "winner." Otherwise, return PGA_FALSE. |
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76 | |
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77 | Category: Utility |
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78 | |
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79 | Inputs: |
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80 | ctx - context variable |
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81 | p - biased probability (.5 is a fair coin) |
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82 | |
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83 | Outputs: |
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84 | PGA_TRUE or PGA_FALSE |
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85 | |
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86 | Example: |
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87 | To return PGA_TRUE approximately seventy percent of the time, use |
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88 | |
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89 | PGAContext *ctx; |
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90 | int p; |
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91 | : |
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92 | PGARandomFlip(ctx, 0.7) |
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93 | |
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94 | ****************************************************************************U*/ |
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95 | int PGARandomFlip ( PGAContext *ctx, double p ) |
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96 | { |
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97 | PGADebugEntered("PGARandomFlip"); |
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98 | |
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99 | PGADebugExited("PGARandomFlip"); |
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100 | |
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101 | return( (PGARandom01(ctx, 0) < p) ? PGA_TRUE : PGA_FALSE); |
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102 | } |
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103 | |
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104 | |
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105 | /*U**************************************************************************** |
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106 | PGARandomInterval - returns a uniform random number on the specified |
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107 | interval |
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108 | |
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109 | Category: Utility |
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110 | |
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111 | Inputs: |
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112 | ctx - context variable |
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113 | start - starting (integer) value of the interval |
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114 | end - ending (integer) value of the interval |
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115 | |
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116 | Outputs: |
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117 | A uniformly distributed random number in the interval [start, end]. |
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118 | |
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119 | Example: |
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120 | Generate a value uniformly random from the interval [0,99] |
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121 | |
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122 | PGAContext *ctx; |
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123 | : |
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124 | PGARandomInterval(ctx, 0, 99); |
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125 | |
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126 | ****************************************************************************U*/ |
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127 | int PGARandomInterval( PGAContext *ctx, int start, int end) |
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128 | { |
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129 | PGADebugEntered("PGARandomInterval"); |
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130 | |
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131 | PGADebugExited("PGARandomInterval"); |
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132 | |
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133 | return( (int)floor(PGARandom01(ctx, 0) * (double)(end-start+1) ) + start ); |
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134 | |
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135 | /* |
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136 | The original call... |
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137 | |
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138 | return(ceil( (double)(end-start+1) * PGARandom01(ctx, 0) )+start-1); |
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139 | */ |
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140 | } |
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141 | |
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142 | |
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143 | /***************************************************************************** |
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144 | * This is a C language implementation of the universal random number * |
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145 | * generator proposed by G. Marsaglia and A. Zaman and translated from * |
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146 | * F. James' version. * |
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147 | * * |
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148 | * F. James * |
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149 | * A review of pseudorandom number generators * |
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150 | * Computer Physics Communication * |
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151 | * 60 (1990) 329-344 * |
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152 | * * |
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153 | * G. Marsaglia, A. Zaman, W. Tseng * |
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154 | * Stat Prob. Letter * |
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155 | * 9 (1990) 35. * |
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156 | * * |
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157 | * G. Marsaglia, A. Zaman * |
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158 | * FSU-SCRI-87-50 * |
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159 | * * |
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160 | * This algorithm is a combination of a lagged Fibonacci and arithmetic * |
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161 | * sequence (F. James) generator with period of 2^144. It provides 32-bit * |
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162 | * floating point numbers in the range from zero to one. It is claimed to * |
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163 | * be portable and provides bit-identical results on all machines with at * |
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164 | * least 24-bit mantissas. * |
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165 | * * |
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166 | * PGARandom01 should be initialized with a 32-bit integer seed such that * |
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167 | * 0 <= seed <= 900,000,000. Each of these 900,000,000 values gives rise * |
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168 | * to an independent sequence of ~ 10^30. * |
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169 | * * |
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170 | * warning on use of static storage class on thread shared memory machines * |
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171 | *****************************************************************************/ |
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172 | /*U**************************************************************************** |
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173 | PGARandom01 - generates a uniform random number on the interval [0,1) |
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174 | If the second argument is 0 it returns the next random number in the |
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175 | sequence. Otherwise, the second argument is used as a new seed for the |
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176 | population |
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177 | |
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178 | Category: Utility |
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179 | |
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180 | Inputs: |
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181 | ctx - context variable |
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182 | newseed - either 0 to get the next random number, or nonzero |
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183 | to reseed |
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184 | Outputs: |
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185 | A random number on the interval [0,1) |
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186 | |
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187 | Example: |
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188 | To get the next random number use |
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189 | |
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190 | PGAContext *ctx; |
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191 | double r; |
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192 | : |
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193 | r = PGARandom01(ctx,0); |
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194 | |
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195 | ****************************************************************************U*/ |
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196 | double PGARandom01( PGAContext *ctx, int newseed ) |
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197 | { |
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198 | |
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199 | /* initialization variables */ |
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200 | int ij, kl, i, j, k, l, m, ii, jj; |
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201 | float s, t; |
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202 | |
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203 | /* random number variables */ |
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204 | static int seed=1; /* default seed if none specified */ |
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205 | static int i96, j96; |
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206 | static float u[97], uni, c, cd, cm; |
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207 | |
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208 | |
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209 | PGADebugEntered("PGARandom01"); |
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210 | |
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211 | /* initialization */ |
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212 | /* printf("i96 = %d\tj96 = %d\n", i96, j96); */ |
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213 | |
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214 | if ( newseed != 0 ) { |
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215 | |
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216 | seed = newseed % 900000000; |
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217 | ij = seed / 30082; |
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218 | kl = seed - 30082 * ij; |
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219 | i = ( (ij/177) % 177 ) + 2; |
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220 | j = ( ij % 177 ) + 2; |
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221 | k = ( (kl/169) % 178 ) + 1; |
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222 | l = ( kl % 169 ); |
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223 | |
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224 | for ( ii=0; ii<97; ii++ ) { |
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225 | |
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226 | s = 0.0; |
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227 | t = 0.5; |
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228 | |
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229 | for ( jj=0; jj<24; jj++ ) { |
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230 | |
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231 | m = ( ((i*j) % 179) * k ) % 179; |
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232 | i = j; |
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233 | j = k; |
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234 | k = m; |
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235 | l = ( (53*l) + 1 ) % 169; |
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236 | if ( ( (l*m) % 64 ) >= 32 ) |
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237 | s += t; |
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238 | t *= .5; |
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239 | } |
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240 | |
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241 | u[ii] = s; |
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242 | } |
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243 | |
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244 | c = 362436. /16777216.; |
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245 | cd = 7654321. /16777216.; |
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246 | cm = 16777213./16777216.; |
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247 | i96 = 96; |
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248 | j96 = 32; |
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249 | } |
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250 | |
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251 | /* random number generation */ |
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252 | uni = u[i96] - u[j96]; |
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253 | if ( uni < 0. ) uni += 1.0; |
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254 | u[i96] = uni; |
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255 | i96--; |
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256 | if ( i96 < 0 ) i96 = 96; |
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257 | j96--; |
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258 | if ( j96 < 0 ) j96 = 96; |
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259 | c -= cd; |
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260 | if ( c < 0. ) c += cm; |
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261 | uni -= c; |
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262 | if ( uni < 0. ) uni += 1.0; |
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263 | |
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264 | PGADebugExited("PGARandom01"); |
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265 | return( (double) uni); |
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266 | } |
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267 | |
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268 | /*U**************************************************************************** |
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269 | PGARandomUniform - returns a uniform random number on the interval |
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270 | [start,end] |
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271 | |
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272 | Category: Utility |
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273 | |
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274 | Inputs: |
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275 | ctx - context variable |
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276 | start - starting (double) value of the interval |
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277 | end - ending (double) value of the interval |
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278 | |
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279 | Outputs: |
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280 | A random number on the interval [start,end] |
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281 | |
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282 | Example: |
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283 | Generate a uniform random number on the interval [-0.5, 1.5] |
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284 | |
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285 | PGAContext *ctx; |
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286 | double r; |
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287 | : |
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288 | r = PGARandomUniform(ctx, -0.5, 1.5); |
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289 | |
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290 | ****************************************************************************U*/ |
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291 | double PGARandomUniform( PGAContext *ctx, double start, double end) |
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292 | { |
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293 | double val, r; |
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294 | |
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295 | PGADebugEntered("PGARandomUniform"); |
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296 | |
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297 | r = PGARandom01(ctx, 0); |
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298 | val = (end-start) * r + start; |
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299 | |
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300 | PGADebugExited("PGARandomUniform"); |
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301 | |
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302 | return(val); |
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303 | } |
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304 | |
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305 | |
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306 | /*U**************************************************************************** |
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307 | PGARandomGaussian - returns an approximation to a Gaussian random number |
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308 | |
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309 | Category: Utility |
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310 | |
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311 | Inputs: |
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312 | mean - the mean of the Gaussian distribution |
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313 | sigma - the standard deviation of the Gaussian distribution |
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314 | |
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315 | Outputs: |
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316 | A random number selected from a Gaussian distribution with given |
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317 | mean and standard deviation |
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318 | |
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319 | Example: |
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320 | To generate a Gaussian random number with mean 0.0 and standard |
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321 | deviation 1.0 use |
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322 | |
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323 | PGAContext *ctx; |
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324 | : |
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325 | r = PGARandomGaussian(ctx, 0.0, 1.0); |
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326 | |
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327 | ****************************************************************************U*/ |
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328 | double PGARandomGaussian( PGAContext *ctx, double mean, double sigma) |
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329 | { |
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330 | int i; |
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331 | double sum = 0.; |
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332 | |
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333 | PGADebugEntered("PGARandomGaussian"); |
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334 | |
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335 | for (i=11;i>=0; i--) |
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336 | sum += PGARandom01(ctx, 0); |
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337 | |
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338 | PGADebugExited("PGARandomGaussian"); |
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339 | |
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340 | return ( (sum-6.0) * sigma + mean ); |
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341 | } |
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342 | |
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343 | /*U*************************************************************************** |
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344 | PGAGetRandomSeed - returns the integer to seed random numbers with |
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345 | |
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346 | Category: Utility |
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347 | |
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348 | Inputs: |
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349 | ctx - context variable |
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350 | |
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351 | Outputs: |
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352 | The seed for the random number generator |
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353 | |
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354 | Example: |
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355 | PGAContext *ctx; |
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356 | int seed; |
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357 | : |
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358 | seed = PGAGetRandomSeed(ctx); |
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359 | |
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360 | ***************************************************************************U*/ |
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361 | int PGAGetRandomSeed(PGAContext *ctx) |
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362 | { |
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363 | PGADebugEntered("PGAGetRandomSeed"); |
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364 | |
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365 | PGADebugExited("PGAGetRandomSeed"); |
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366 | |
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367 | return(ctx->init.RandomSeed); |
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368 | } |
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369 | |
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370 | /*U**************************************************************************** |
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371 | PGASetRandomSeed - set a seed for the random number generator. The |
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372 | default is to use a random seed. Specifying a seed exlicitly allows |
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373 | for reproducibility of runs. |
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374 | |
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375 | Category: Utility |
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376 | |
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377 | Inputs: |
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378 | ctx - context variable |
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379 | seed - seed for the random number generator |
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380 | |
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381 | Outputs: |
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382 | None |
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383 | |
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384 | Example: |
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385 | PGAContext *ctx; |
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386 | : |
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387 | PGASetRandomSeed(ctx,1); |
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388 | |
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389 | ****************************************************************************U*/ |
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390 | void PGASetRandomSeed(PGAContext *ctx, int seed) |
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391 | { |
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392 | #define MAX_PROCESSORS 2048 |
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393 | |
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394 | PGADebugEntered("PGASetRandomSeed"); |
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395 | PGAFailIfSetUp("PGASetRandomSeed"); |
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396 | |
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397 | if ((seed < 1) || (seed + MAX_PROCESSORS > 900000000)) |
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398 | PGAError ( ctx, "PGASetRandomSeed: Invalid value of seed:", |
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399 | PGA_FATAL, PGA_INT, (void *) &seed); |
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400 | else |
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401 | ctx->init.RandomSeed = seed; |
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402 | |
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403 | PGADebugExited("PGASetRandomSeed"); |
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404 | } |
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405 | |
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406 | /***************************************************************************** |
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407 | Category: Generation/Utility |
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408 | |
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409 | Inputs: |
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410 | ctx - context variable |
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411 | randreplaceprop - proportion of individuals to be replaced per generation randomly, post initialization |
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412 | |
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413 | Outputs: |
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414 | None |
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415 | |
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416 | Example: |
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417 | PGAContext *ctx; |
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418 | . |
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419 | . |
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420 | PGASetRandReplProp(ctx, 0.05); |
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421 | ***************************************************************************/ |
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422 | void PGASetRandReplProp(PGAContext *ctx, double randreplprop){ |
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423 | PGADebugEntered("PGASetRandReplProp"); |
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424 | PGAFailIfSetUp("PGASetRandReplProp"); |
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425 | if(randreplprop < 0 || randreplprop > 1){ |
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426 | PGAError ( ctx, "PGASetRandReplProp: Invalid value set:", |
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427 | PGA_FATAL, PGA_DOUBLE, (void *) &randreplprop); |
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428 | }else{ |
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429 | ctx->ga.randreplprop = randreplprop; |
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430 | } |
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431 | PGADebugExited("PGASetRandReplProp"); |
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432 | } |
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433 | |
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434 | /***************************************************************************** |
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435 | Category: Generation/Utility |
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436 | |
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437 | Inputs: |
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438 | ctx - context variable |
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439 | |
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440 | Outputs: |
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441 | randreplprop - proportion of randomly generated individuals per population, post initialization |
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442 | |
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443 | Example: |
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444 | PGAContext *ctx; |
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445 | double randreplprop; |
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446 | . |
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447 | . |
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448 | randreplprop = PGAGetRandReplProp(ctx); |
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449 | ***************************************************************************/ |
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450 | double PGAGetRandReplProp(PGAContext *ctx){ |
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451 | PGADebugEntered("PGAGetRandReplProp"); |
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452 | PGADebugExited("PGAGetRandReplProp"); |
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453 | return ctx->ga.randreplprop; |
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454 | } |
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