1 | |
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2 | /* |
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3 | * ---------------------------------------------------------------------- |
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4 | * Nanovis: Visualization of Nanoelectronics Data |
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5 | * |
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6 | * dxReader.cpp |
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7 | * This module contains openDX readers for 2D and 3D volumes. |
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8 | * |
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9 | * ====================================================================== |
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10 | * AUTHOR: Wei Qiao <qiaow@purdue.edu> |
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11 | * Michael McLennan <mmclennan@purdue.edu> |
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12 | * Purdue Rendering and Perceptualization Lab (PURPL) |
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13 | * |
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14 | * Copyright (c) 2004-2006 Purdue Research Foundation |
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15 | * |
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16 | * See the file "license.terms" for information on usage and |
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17 | * redistribution of this file, and for a DISCLAIMER OF ALL WARRANTIES. |
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18 | * ====================================================================== |
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19 | */ |
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20 | |
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21 | #include <stdio.h> |
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22 | #include <math.h> |
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23 | #include <fstream> |
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24 | #include <iostream> |
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25 | #include <sstream> |
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26 | #include <string> |
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27 | #include <sys/types.h> |
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28 | #include <unistd.h> |
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29 | |
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30 | #include "Nv.h" |
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31 | |
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32 | #include "nanovis.h" |
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33 | #include "RpField1D.h" |
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34 | #include "RpFieldRect3D.h" |
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35 | #include "RpFieldPrism3D.h" |
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36 | |
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37 | //transfer function headers |
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38 | #include "ZincBlendeVolume.h" |
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39 | #include "NvZincBlendeReconstructor.h" |
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40 | #include "GradientFilter.h" |
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41 | |
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42 | #define _LOCAL_ZINC_TEST_ 0 |
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43 | |
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44 | static float * |
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45 | merge(float* scalar, float* gradient, int size) |
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46 | { |
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47 | float* data = (float*) malloc(sizeof(float) * 4 * size); |
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48 | |
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49 | Vector3* g = (Vector3*) gradient; |
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50 | |
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51 | int ngen = 0, sindex = 0; |
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52 | for (sindex = 0; sindex <size; ++sindex) { |
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53 | data[ngen++] = scalar[sindex]; |
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54 | data[ngen++] = g[sindex].x; |
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55 | data[ngen++] = g[sindex].y; |
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56 | data[ngen++] = g[sindex].z; |
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57 | } |
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58 | return data; |
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59 | } |
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60 | |
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61 | static void |
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62 | normalizeScalar(float* fdata, int count, float min, float max) |
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63 | { |
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64 | float v = max - min; |
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65 | if (v != 0.0f) { |
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66 | for (int i = 0; i < count; ++i) { |
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67 | fdata[i] = fdata[i] / v; |
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68 | } |
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69 | } |
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70 | } |
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71 | |
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72 | static float* |
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73 | computeGradient(float* fdata, int width, int height, int depth, |
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74 | float min, float max) |
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75 | { |
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76 | float* gradients = (float *)malloc(width * height * depth * 3 * |
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77 | sizeof(float)); |
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78 | float* tempGradients = (float *)malloc(width * height * depth * 3 * |
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79 | sizeof(float)); |
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80 | int sizes[3] = { width, height, depth }; |
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81 | computeGradients(tempGradients, fdata, sizes, DATRAW_FLOAT); |
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82 | filterGradients(tempGradients, sizes); |
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83 | quantizeGradients(tempGradients, gradients, sizes, DATRAW_FLOAT); |
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84 | normalizeScalar(fdata, width * height * depth, min, max); |
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85 | float* data = merge(fdata, gradients, width * height * depth); |
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86 | return data; |
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87 | } |
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88 | |
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89 | /* |
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90 | * Load a 3D vector field from a dx-format file |
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91 | */ |
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92 | void |
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93 | load_vector_stream(int index, std::istream& fin) |
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94 | { |
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95 | int dummy, nx, ny, nz, npts; |
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96 | double x0, y0, z0, dx, dy, dz, ddx, ddy, ddz; |
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97 | char line[128], type[128], *start; |
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98 | |
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99 | dx = dy = dz = 0.0; // Suppress compiler warning. |
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100 | while (!fin.eof()) { |
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101 | fin.getline(line, sizeof(line) - 1); |
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102 | if (fin.fail()) { |
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103 | //return result.error("error in data stream"); |
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104 | return; |
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105 | } |
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106 | for (start=&line[0]; *start == ' ' || *start == '\t'; start++) |
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107 | ; // skip leading blanks |
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108 | |
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109 | if (*start != '#') { // skip comment lines |
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110 | if (sscanf(start, "object %d class gridpositions counts %d %d %d", &dummy, &nx, &ny, &nz) == 4) { |
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111 | // found grid size |
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112 | } else if (sscanf(start, "origin %lg %lg %lg", &x0, &y0, &z0) == 3) { |
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113 | // found origin |
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114 | } else if (sscanf(start, "delta %lg %lg %lg", &ddx, &ddy, &ddz) == 3) { |
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115 | // found one of the delta lines |
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116 | if (ddx != 0.0) { |
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117 | dx = ddx; |
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118 | } else if (ddy != 0.0) { |
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119 | dy = ddy; |
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120 | } else if (ddz != 0.0) { |
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121 | dz = ddz; |
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122 | } |
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123 | } else if (sscanf(start, "object %d class array type %s shape 3 rank 1 items %d data follows", &dummy, type, &npts) == 3) { |
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124 | if (npts != nx*ny*nz) { |
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125 | std::cerr << "inconsistent data: expected " << nx*ny*nz << " points but found " << npts << " points" << std::endl; |
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126 | return; |
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127 | } |
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128 | break; |
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129 | } else if (sscanf(start, "object %d class array type %s rank 0 times %d data follows", &dummy, type, &npts) == 3) { |
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130 | if (npts != nx*ny*nz) { |
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131 | std::cerr << "inconsistent data: expected " << nx*ny*nz << " points but found " << npts << " points" << std::endl; |
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132 | return; |
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133 | } |
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134 | break; |
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135 | } |
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136 | } |
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137 | } |
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138 | |
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139 | // read data points |
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140 | if (!fin.eof()) { |
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141 | Rappture::Mesh1D xgrid(x0, x0+nx*dx, nx); |
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142 | Rappture::Mesh1D ygrid(y0, y0+ny*dy, ny); |
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143 | Rappture::Mesh1D zgrid(z0, z0+nz*dz, nz); |
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144 | Rappture::FieldRect3D xfield(xgrid, ygrid, zgrid); |
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145 | Rappture::FieldRect3D yfield(xgrid, ygrid, zgrid); |
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146 | Rappture::FieldRect3D zfield(xgrid, ygrid, zgrid); |
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147 | |
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148 | double vx, vy, vz; |
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149 | int nread = 0; |
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150 | for (int ix=0; ix < nx; ix++) { |
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151 | for (int iy=0; iy < ny; iy++) { |
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152 | for (int iz=0; iz < nz; iz++) { |
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153 | if (fin.eof() || nread > npts) { |
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154 | break; |
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155 | } |
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156 | fin.getline(line,sizeof(line)-1); |
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157 | if (sscanf(line, "%lg %lg %lg", &vx, &vy, &vz) == 3) { |
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158 | int nindex = iz*nx*ny + iy*nx + ix; |
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159 | xfield.define(nindex, vx); |
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160 | yfield.define(nindex, vy); |
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161 | zfield.define(nindex, vz); |
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162 | nread++; |
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163 | } |
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164 | } |
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165 | } |
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166 | } |
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167 | |
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168 | // make sure that we read all of the expected points |
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169 | if (nread != nx*ny*nz) { |
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170 | std::cerr << "inconsistent data: expected " << nx*ny*nz << " points but found " << nread << " points" << std::endl; |
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171 | return; |
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172 | } |
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173 | |
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174 | // figure out a good mesh spacing |
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175 | int nsample = 30; |
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176 | dx = xfield.rangeMax(Rappture::xaxis) - xfield.rangeMin(Rappture::xaxis); |
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177 | dy = xfield.rangeMax(Rappture::yaxis) - xfield.rangeMin(Rappture::yaxis); |
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178 | dz = xfield.rangeMax(Rappture::zaxis) - xfield.rangeMin(Rappture::zaxis); |
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179 | double dmin = pow((dx*dy*dz)/(nsample*nsample*nsample), 0.333); |
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180 | |
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181 | nx = (int)ceil(dx/dmin); |
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182 | ny = (int)ceil(dy/dmin); |
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183 | nz = (int)ceil(dz/dmin); |
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184 | |
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185 | #ifndef NV40 |
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186 | // must be an even power of 2 for older cards |
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187 | nx = (int)pow(2.0, ceil(log10((double)nx)/log10(2.0))); |
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188 | ny = (int)pow(2.0, ceil(log10((double)ny)/log10(2.0))); |
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189 | nz = (int)pow(2.0, ceil(log10((double)nz)/log10(2.0))); |
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190 | #endif |
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191 | |
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192 | float *data = new float[3*nx*ny*nz]; |
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193 | memset(data, 0, sizeof(float) * 3 * nx * ny * nz); |
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194 | |
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195 | std::cout << "generating " << nx << "x" << ny << "x" << nz << " = " << nx*ny*nz << " points" << std::endl; |
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196 | |
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197 | // generate the uniformly sampled data that we need for a volume |
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198 | double vmin = 1e21; |
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199 | double vmax = -1e21; |
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200 | double nzero_min = 0.0; |
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201 | int ngen = 0; |
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202 | for (int iz=0; iz < nz; iz++) { |
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203 | double zval = z0 + iz*dmin; |
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204 | for (int iy=0; iy < ny; iy++) { |
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205 | double yval = y0 + iy*dmin; |
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206 | for (int ix=0; ix < nx; ix++) { |
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207 | double xval = x0 + ix*dmin; |
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208 | |
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209 | vx = xfield.value(xval,yval,zval); |
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210 | vy = yfield.value(xval,yval,zval); |
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211 | vz = zfield.value(xval,yval,zval); |
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212 | |
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213 | double vm; |
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214 | vm = sqrt(vx*vx + vy*vy + vz*vz); |
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215 | if (vm < vmin) { |
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216 | vmin = vm; |
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217 | } else if (vm > vmax) { |
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218 | vmax = vm; |
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219 | } |
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220 | if ((vm != 0.0f) && (vm < nzero_min)) { |
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221 | nzero_min = vm; |
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222 | } |
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223 | data[ngen++] = vx; |
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224 | data[ngen++] = vy; |
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225 | data[ngen++] = vz; |
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226 | } |
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227 | } |
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228 | } |
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229 | |
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230 | ngen = 0; |
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231 | |
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232 | // scale should be accounted. |
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233 | for (ngen=0; ngen < npts; ngen++) { |
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234 | data[ngen] = (data[ngen]/(2.0*vmax) + 0.5); |
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235 | } |
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236 | Volume *volPtr; |
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237 | volPtr = NanoVis::load_volume(index, nx, ny, nz, 3, data, vmin, vmax, |
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238 | nzero_min); |
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239 | volPtr->set_limits(NanoVis::X, x0, x0 + (nx * ddx)); |
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240 | volPtr->set_limits(NanoVis::Y, y0, y0 + (ny * ddy)); |
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241 | volPtr->set_limits(NanoVis::Z, z0, z0 + (nz * ddz)); |
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242 | delete [] data; |
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243 | } else { |
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244 | std::cerr << "WARNING: data not found in stream" << std::endl; |
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245 | } |
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246 | } |
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247 | |
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248 | |
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249 | /* Load a 3D volume from a dx-format file |
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250 | */ |
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251 | Rappture::Outcome |
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252 | load_volume_stream2(int index, std::iostream& fin) |
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253 | { |
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254 | Rappture::Outcome result; |
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255 | |
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256 | Rappture::MeshTri2D xymesh; |
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257 | int dummy, nx, ny, nz, nxy, npts; |
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258 | double x0, y0, z0, dx, dy, dz, ddx, ddy, ddz; |
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259 | char line[128], type[128], *start; |
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260 | |
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261 | int isrect = 1; |
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262 | dx = dy = dz = 0.0; // Suppress compiler warning. |
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263 | do { |
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264 | fin.getline(line,sizeof(line)-1); |
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265 | for (start=&line[0]; *start == ' ' || *start == '\t'; start++) |
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266 | ; // skip leading blanks |
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267 | |
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268 | if (*start != '#') { // skip comment lines |
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269 | printf("%s\n", line); |
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270 | if (sscanf(start, "object %d class gridpositions counts %d %d %d", &dummy, &nx, &ny, &nz) == 4) { |
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271 | // found grid size |
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272 | isrect = 1; |
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273 | } else if (sscanf(start, "object %d class array type float rank 1 shape 3 items %d data follows", &dummy, &nxy) == 2) { |
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274 | isrect = 0; |
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275 | double xx, yy, zz; |
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276 | for (int i=0; i < nxy; i++) { |
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277 | fin.getline(line, sizeof(line)); |
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278 | fin.getline(line,sizeof(line)-1); |
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279 | if (sscanf(line, "%lg %lg %lg", &xx, &yy, &zz) == 3) { |
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280 | xymesh.addNode( Rappture::Node2D(xx,yy) ); |
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281 | } |
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282 | } |
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283 | char mesg[256]; |
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284 | sprintf(mesg,"test"); |
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285 | result.error(mesg); |
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286 | return result; |
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287 | |
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288 | char fpts[128]; |
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289 | sprintf(fpts, "/tmp/tmppts%d", getpid()); |
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290 | char fcells[128]; |
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291 | sprintf(fcells, "/tmp/tmpcells%d", getpid()); |
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292 | |
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293 | std::ofstream ftmp(fpts); |
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294 | // save corners of bounding box first, to work around meshing |
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295 | // problems in voronoi utility |
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296 | ftmp << xymesh.rangeMin(Rappture::xaxis) << " " |
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297 | << xymesh.rangeMin(Rappture::yaxis) << std::endl; |
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298 | ftmp << xymesh.rangeMax(Rappture::xaxis) << " " |
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299 | << xymesh.rangeMin(Rappture::yaxis) << std::endl; |
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300 | ftmp << xymesh.rangeMax(Rappture::xaxis) << " " |
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301 | << xymesh.rangeMax(Rappture::yaxis) << std::endl; |
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302 | ftmp << xymesh.rangeMin(Rappture::xaxis) << " " |
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303 | << xymesh.rangeMax(Rappture::yaxis) << std::endl; |
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304 | for (int i=0; i < nxy; i++) { |
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305 | ftmp << xymesh.atNode(i).x() << " " << xymesh.atNode(i).y() << std::endl; |
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306 | |
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307 | } |
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308 | ftmp.close(); |
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309 | |
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310 | char cmdstr[512]; |
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311 | sprintf(cmdstr, "voronoi -t < %s > %s", fpts, fcells); |
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312 | if (system(cmdstr) == 0) { |
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313 | int cx, cy, cz; |
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314 | std::ifstream ftri(fcells); |
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315 | while (!ftri.eof()) { |
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316 | ftri.getline(line,sizeof(line)-1); |
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317 | if (sscanf(line, "%d %d %d", &cx, &cy, &cz) == 3) { |
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318 | if (cx >= 4 && cy >= 4 && cz >= 4) { |
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319 | // skip first 4 boundary points |
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320 | xymesh.addCell(cx-4, cy-4, cz-4); |
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321 | } |
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322 | } |
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323 | } |
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324 | ftri.close(); |
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325 | } else { |
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326 | return result.error("triangularization failed"); |
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327 | } |
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328 | |
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329 | sprintf(cmdstr, "rm -f %s %s", fpts, fcells); |
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330 | system(cmdstr); |
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331 | } else if (sscanf(start, "object %d class regulararray count %d", &dummy, &nz) == 2) { |
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332 | // found z-grid |
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333 | } else if (sscanf(start, "origin %lg %lg %lg", &x0, &y0, &z0) == 3) { |
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334 | // found origin |
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335 | } else if (sscanf(start, "delta %lg %lg %lg", &ddx, &ddy, &ddz) == 3) { |
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336 | int count = 0; |
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337 | // found one of the delta lines |
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338 | if (ddx != 0.0) { |
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339 | dx = ddx; |
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340 | count++; |
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341 | } |
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342 | if (ddy != 0.0) { |
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343 | dy = ddy; |
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344 | count++; |
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345 | } |
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346 | if (ddz != 0.0) { |
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347 | dz = ddz; |
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348 | count++; |
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349 | } |
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350 | if (count > 1) { |
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351 | return result.error( |
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352 | "don't know how to handle multiple non-zero delta values"); |
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353 | } |
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354 | } else if (sscanf(start, "object %d class array type %s rank 0 items %d data follows", &dummy, type, &npts) == 3) { |
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355 | if (isrect && (npts != nx*ny*nz)) { |
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356 | char mesg[256]; |
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357 | sprintf(mesg,"inconsistent data: expected %d points but found %d points", nx*ny*nz, npts); |
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358 | return result.error(mesg); |
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359 | } else if (!isrect && (npts != nxy*nz)) { |
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360 | char mesg[256]; |
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361 | sprintf(mesg,"inconsistent data: expected %d points but found %d points", nxy*nz, npts); |
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362 | return result.error(mesg); |
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363 | } |
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364 | break; |
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365 | } else if (sscanf(start, "object %d class array type %s rank 0 times %d data follows", &dummy, type, &npts) == 3) { |
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366 | if (npts != nx*ny*nz) { |
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367 | char mesg[256]; |
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368 | sprintf(mesg,"inconsistent data: expected %d points but found %d points", nx*ny*nz, npts); |
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369 | return result.error(mesg); |
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370 | } |
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371 | break; |
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372 | } |
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373 | } |
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374 | } while (!fin.eof()); |
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375 | |
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376 | // read data points |
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377 | if (!fin.eof()) { |
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378 | if (isrect) { |
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379 | double dval[6]; |
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380 | int nread = 0; |
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381 | int ix = 0; |
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382 | int iy = 0; |
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383 | int iz = 0; |
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384 | float* data = new float[nx * ny * nz * 4]; |
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385 | memset(data, 0, nx*ny*nz*4); |
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386 | double vmin = 1e21; |
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387 | double nzero_min = 1e21; |
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388 | double vmax = -1e21; |
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389 | |
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390 | |
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391 | while (!fin.eof() && nread < npts) { |
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392 | fin.getline(line,sizeof(line)-1); |
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393 | int n = sscanf(line, "%lg %lg %lg %lg %lg %lg", &dval[0], &dval[1], &dval[2], &dval[3], &dval[4], &dval[5]); |
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394 | |
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395 | for (int p=0; p < n; p++) { |
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396 | int nindex = (iz*nx*ny + iy*nx + ix) * 4; |
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397 | data[nindex] = dval[p]; |
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398 | |
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399 | if (dval[p] < vmin) { |
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400 | vmin = dval[p]; |
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401 | } else if (dval[p] > vmax) { |
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402 | vmax = dval[p]; |
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403 | } |
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404 | if (dval[p] != 0.0f && dval[p] < nzero_min) { |
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405 | nzero_min = dval[p]; |
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406 | } |
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407 | |
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408 | nread++; |
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409 | if (++iz >= nz) { |
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410 | iz = 0; |
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411 | if (++iy >= ny) { |
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412 | iy = 0; |
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413 | ++ix; |
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414 | } |
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415 | } |
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416 | } |
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417 | } |
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418 | |
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419 | // make sure that we read all of the expected points |
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420 | if (nread != nx*ny*nz) { |
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421 | char mesg[256]; |
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422 | sprintf(mesg,"inconsistent data: expected %d points but found %d points", nx*ny*nz, nread); |
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423 | result.error(mesg); |
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424 | return result; |
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425 | } |
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426 | |
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427 | double dv = vmax - vmin; |
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428 | int count = nx*ny*nz; |
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429 | int ngen = 0; |
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430 | double v; |
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431 | printf("test2\n"); |
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432 | fflush(stdout); |
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433 | if (dv == 0.0) { |
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434 | dv = 1.0; |
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435 | } |
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436 | for (int i = 0; i < count; ++i) { |
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437 | v = data[ngen]; |
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438 | // scale all values [0-1], -1 => out of bounds |
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439 | v = (isnan(v)) ? -1.0 : (v - vmin)/dv; |
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440 | data[ngen] = v; |
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441 | ngen += 4; |
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442 | } |
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443 | // Compute the gradient of this data. BE CAREFUL: center |
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444 | // calculation on each node to avoid skew in either direction. |
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445 | ngen = 0; |
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446 | for (int iz=0; iz < nz; iz++) { |
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447 | for (int iy=0; iy < ny; iy++) { |
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448 | for (int ix=0; ix < nx; ix++) { |
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449 | // gradient in x-direction |
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450 | double valm1 = (ix == 0) ? 0.0 : data[ngen - 4]; |
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451 | double valp1 = (ix == nx-1) ? 0.0 : data[ngen + 4]; |
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452 | if (valm1 < 0 || valp1 < 0) { |
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453 | data[ngen+1] = 0.0; |
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454 | } else { |
---|
455 | data[ngen+1] = valp1-valm1; // assume dx=1 |
---|
456 | //data[ngen+1] = ((valp1-valm1) + 1) * 0.5; // assume dx=1 |
---|
457 | } |
---|
458 | |
---|
459 | // gradient in y-direction |
---|
460 | valm1 = (iy == 0) ? 0.0 : data[ngen-4*nx]; |
---|
461 | valp1 = (iy == ny-1) ? 0.0 : data[ngen+4*nx]; |
---|
462 | if (valm1 < 0 || valp1 < 0) { |
---|
463 | data[ngen+2] = 0.0; |
---|
464 | } else { |
---|
465 | data[ngen+2] = valp1-valm1; // assume dx=1 |
---|
466 | //data[ngen+2] = ((valp1-valm1) + 1) * 0.5; // assume dy=1 |
---|
467 | } |
---|
468 | |
---|
469 | // gradient in z-direction |
---|
470 | valm1 = (iz == 0) ? 0.0 : data[ngen-4*nx*ny]; |
---|
471 | valp1 = (iz == nz-1) ? 0.0 : data[ngen+4*nx*ny]; |
---|
472 | if (valm1 < 0 || valp1 < 0) { |
---|
473 | data[ngen+3] = 0.0; |
---|
474 | } else { |
---|
475 | data[ngen+3] = valp1-valm1; // assume dx=1 |
---|
476 | //data[ngen+3] = ((valp1-valm1) + 1.0) * 0.5; // assume dz=1 |
---|
477 | } |
---|
478 | |
---|
479 | ngen += 4; |
---|
480 | } |
---|
481 | } |
---|
482 | } |
---|
483 | |
---|
484 | dx = nx; |
---|
485 | dy = ny; |
---|
486 | dz = nz; |
---|
487 | Volume *volPtr; |
---|
488 | volPtr = NanoVis::load_volume(index, nx, ny, nz, 4, data, |
---|
489 | vmin, vmax, nzero_min); |
---|
490 | volPtr->set_limits(NanoVis::X, x0, x0 + (nx * ddx)); |
---|
491 | volPtr->set_limits(NanoVis::Y, y0, y0 + (ny * ddy)); |
---|
492 | volPtr->set_limits(NanoVis::Z, z0, z0 + (nz * ddz)); |
---|
493 | delete [] data; |
---|
494 | |
---|
495 | } else { |
---|
496 | Rappture::Mesh1D zgrid(z0, z0+nz*dz, nz); |
---|
497 | Rappture::FieldPrism3D field(xymesh, zgrid); |
---|
498 | |
---|
499 | double dval; |
---|
500 | int nread = 0; |
---|
501 | int ixy = 0; |
---|
502 | int iz = 0; |
---|
503 | while (!fin.eof() && nread < npts) { |
---|
504 | fin >> dval; |
---|
505 | if (fin.fail()) { |
---|
506 | char mesg[256]; |
---|
507 | sprintf(mesg,"after %d of %d points: can't read number", |
---|
508 | nread, npts); |
---|
509 | return result.error(mesg); |
---|
510 | } else { |
---|
511 | int nid = nxy*iz + ixy; |
---|
512 | field.define(nid, dval); |
---|
513 | |
---|
514 | nread++; |
---|
515 | if (++iz >= nz) { |
---|
516 | iz = 0; |
---|
517 | ixy++; |
---|
518 | } |
---|
519 | } |
---|
520 | } |
---|
521 | |
---|
522 | // make sure that we read all of the expected points |
---|
523 | if (nread != nxy*nz) { |
---|
524 | char mesg[256]; |
---|
525 | sprintf(mesg,"inconsistent data: expected %d points but found %d points", nxy*nz, nread); |
---|
526 | return result.error(mesg); |
---|
527 | } |
---|
528 | |
---|
529 | // figure out a good mesh spacing |
---|
530 | int nsample = 30; |
---|
531 | x0 = field.rangeMin(Rappture::xaxis); |
---|
532 | dx = field.rangeMax(Rappture::xaxis) - field.rangeMin(Rappture::xaxis); |
---|
533 | y0 = field.rangeMin(Rappture::yaxis); |
---|
534 | dy = field.rangeMax(Rappture::yaxis) - field.rangeMin(Rappture::yaxis); |
---|
535 | z0 = field.rangeMin(Rappture::zaxis); |
---|
536 | dz = field.rangeMax(Rappture::zaxis) - field.rangeMin(Rappture::zaxis); |
---|
537 | double dmin = pow((dx*dy*dz)/(nsample*nsample*nsample), 0.333); |
---|
538 | |
---|
539 | nx = (int)ceil(dx/dmin); |
---|
540 | ny = (int)ceil(dy/dmin); |
---|
541 | nz = (int)ceil(dz/dmin); |
---|
542 | #ifndef NV40 |
---|
543 | // must be an even power of 2 for older cards |
---|
544 | nx = (int)pow(2.0, ceil(log10((double)nx)/log10(2.0))); |
---|
545 | ny = (int)pow(2.0, ceil(log10((double)ny)/log10(2.0))); |
---|
546 | nz = (int)pow(2.0, ceil(log10((double)nz)/log10(2.0))); |
---|
547 | #endif |
---|
548 | float *data = new float[4*nx*ny*nz]; |
---|
549 | |
---|
550 | double vmin = field.valueMin(); |
---|
551 | double dv = field.valueMax() - field.valueMin(); |
---|
552 | if (dv == 0.0) { |
---|
553 | dv = 1.0; |
---|
554 | } |
---|
555 | // generate the uniformly sampled data that we need for a volume |
---|
556 | int ngen = 0; |
---|
557 | double nzero_min = 0.0; |
---|
558 | for (iz=0; iz < nz; iz++) { |
---|
559 | double zval = z0 + iz*dmin; |
---|
560 | for (int iy=0; iy < ny; iy++) { |
---|
561 | double yval = y0 + iy*dmin; |
---|
562 | for (int ix=0; ix < nx; ix++) { |
---|
563 | double xval = x0 + ix*dmin; |
---|
564 | double v = field.value(xval,yval,zval); |
---|
565 | |
---|
566 | if (v != 0.0f && v < nzero_min) |
---|
567 | { |
---|
568 | nzero_min = v; |
---|
569 | } |
---|
570 | // scale all values [0-1], -1 => out of bounds |
---|
571 | v = (isnan(v)) ? -1.0 : (v - vmin)/dv; |
---|
572 | data[ngen] = v; |
---|
573 | |
---|
574 | ngen += 4; |
---|
575 | } |
---|
576 | } |
---|
577 | } |
---|
578 | |
---|
579 | // Compute the gradient of this data. BE CAREFUL: center |
---|
580 | // calculation on each node to avoid skew in either direction. |
---|
581 | ngen = 0; |
---|
582 | for (int iz=0; iz < nz; iz++) { |
---|
583 | for (int iy=0; iy < ny; iy++) { |
---|
584 | for (int ix=0; ix < nx; ix++) { |
---|
585 | // gradient in x-direction |
---|
586 | double valm1 = (ix == 0) ? 0.0 : data[ngen-4]; |
---|
587 | double valp1 = (ix == nx-1) ? 0.0 : data[ngen+4]; |
---|
588 | if (valm1 < 0 || valp1 < 0) { |
---|
589 | data[ngen+1] = 0.0; |
---|
590 | } else { |
---|
591 | //data[ngen+1] = valp1-valm1; // assume dx=1 |
---|
592 | data[ngen+1] = ((valp1-valm1) + 1.0) * 0.5; // assume dz=1 |
---|
593 | } |
---|
594 | |
---|
595 | // gradient in y-direction |
---|
596 | valm1 = (iy == 0) ? 0.0 : data[ngen-4*nx]; |
---|
597 | valp1 = (iy == ny-1) ? 0.0 : data[ngen+4*nx]; |
---|
598 | if (valm1 < 0 || valp1 < 0) { |
---|
599 | data[ngen+2] = 0.0; |
---|
600 | } else { |
---|
601 | //data[ngen+2] = valp1-valm1; // assume dy=1 |
---|
602 | data[ngen+2] = ((valp1-valm1) + 1.0) * 0.5; // assume dz=1 |
---|
603 | } |
---|
604 | |
---|
605 | // gradient in z-direction |
---|
606 | valm1 = (iz == 0) ? 0.0 : data[ngen-4*nx*ny]; |
---|
607 | valp1 = (iz == nz-1) ? 0.0 : data[ngen+4*nx*ny]; |
---|
608 | if (valm1 < 0 || valp1 < 0) { |
---|
609 | data[ngen+3] = 0.0; |
---|
610 | } else { |
---|
611 | //data[ngen+3] = valp1-valm1; // assume dz=1 |
---|
612 | data[ngen+3] = ((valp1-valm1) + 1.0) * 0.5; // assume dz=1 |
---|
613 | } |
---|
614 | |
---|
615 | ngen += 4; |
---|
616 | } |
---|
617 | } |
---|
618 | } |
---|
619 | |
---|
620 | Volume *volPtr; |
---|
621 | volPtr = NanoVis::load_volume(index, nx, ny, nz, 4, data, |
---|
622 | field.valueMin(), field.valueMax(), nzero_min); |
---|
623 | volPtr->set_limits(NanoVis::X, field.rangeMin(Rappture::xaxis), |
---|
624 | field.rangeMax(Rappture::xaxis)); |
---|
625 | volPtr->set_limits(NanoVis::Y, field.rangeMin(Rappture::yaxis), |
---|
626 | field.rangeMax(Rappture::yaxis)); |
---|
627 | volPtr->set_limits(NanoVis::Z, field.rangeMin(Rappture::zaxis), |
---|
628 | field.rangeMax(Rappture::zaxis)); |
---|
629 | delete [] data; |
---|
630 | } |
---|
631 | } else { |
---|
632 | return result.error("data not found in stream"); |
---|
633 | } |
---|
634 | |
---|
635 | // |
---|
636 | // Center this new volume on the origin. |
---|
637 | // |
---|
638 | float dx0 = -0.5; |
---|
639 | float dy0 = -0.5*dy/dx; |
---|
640 | float dz0 = -0.5*dz/dx; |
---|
641 | NanoVis::volume[index]->move(Vector3(dx0, dy0, dz0)); |
---|
642 | |
---|
643 | return result; |
---|
644 | } |
---|
645 | |
---|
646 | Rappture::Outcome |
---|
647 | load_volume_stream(int index, std::iostream& fin) |
---|
648 | { |
---|
649 | Rappture::Outcome result; |
---|
650 | |
---|
651 | Rappture::MeshTri2D xymesh; |
---|
652 | int dummy, nx, ny, nz, nxy, npts; |
---|
653 | double x0, y0, z0, dx, dy, dz, ddx, ddy, ddz; |
---|
654 | char line[128], type[128], *start; |
---|
655 | |
---|
656 | int isrect = 1; |
---|
657 | |
---|
658 | dx = dy = dz = 0.0; // Suppress compiler warning. |
---|
659 | while (!fin.eof()) { |
---|
660 | fin.getline(line, sizeof(line) - 1); |
---|
661 | if (fin.fail()) { |
---|
662 | return result.error("error in data stream"); |
---|
663 | } |
---|
664 | for (start=line; *start == ' ' || *start == '\t'; start++) |
---|
665 | ; // skip leading blanks |
---|
666 | |
---|
667 | if (*start != '#') { // skip comment lines |
---|
668 | if (sscanf(start, "object %d class gridpositions counts %d %d %d", &dummy, &nx, &ny, &nz) == 4) { |
---|
669 | // found grid size |
---|
670 | isrect = 1; |
---|
671 | } else if (sscanf(start, "object %d class array type float rank 1 shape 3 items %d data follows", &dummy, &nxy) == 2) { |
---|
672 | isrect = 0; |
---|
673 | |
---|
674 | double xx, yy, zz; |
---|
675 | for (int i=0; i < nxy; i++) { |
---|
676 | fin.getline(line,sizeof(line)-1); |
---|
677 | if (sscanf(line, "%lg %lg %lg", &xx, &yy, &zz) == 3) { |
---|
678 | xymesh.addNode( Rappture::Node2D(xx,yy) ); |
---|
679 | } |
---|
680 | } |
---|
681 | |
---|
682 | char fpts[128]; |
---|
683 | sprintf(fpts, "/tmp/tmppts%d", getpid()); |
---|
684 | char fcells[128]; |
---|
685 | sprintf(fcells, "/tmp/tmpcells%d", getpid()); |
---|
686 | |
---|
687 | std::ofstream ftmp(fpts); |
---|
688 | // save corners of bounding box first, to work around meshing |
---|
689 | // problems in voronoi utility |
---|
690 | ftmp << xymesh.rangeMin(Rappture::xaxis) << " " |
---|
691 | << xymesh.rangeMin(Rappture::yaxis) << std::endl; |
---|
692 | ftmp << xymesh.rangeMax(Rappture::xaxis) << " " |
---|
693 | << xymesh.rangeMin(Rappture::yaxis) << std::endl; |
---|
694 | ftmp << xymesh.rangeMax(Rappture::xaxis) << " " |
---|
695 | << xymesh.rangeMax(Rappture::yaxis) << std::endl; |
---|
696 | ftmp << xymesh.rangeMin(Rappture::xaxis) << " " |
---|
697 | << xymesh.rangeMax(Rappture::yaxis) << std::endl; |
---|
698 | for (int i=0; i < nxy; i++) { |
---|
699 | ftmp << xymesh.atNode(i).x() << " " << xymesh.atNode(i).y() << std::endl; |
---|
700 | |
---|
701 | } |
---|
702 | ftmp.close(); |
---|
703 | |
---|
704 | char cmdstr[512]; |
---|
705 | sprintf(cmdstr, "voronoi -t < %s > %s", fpts, fcells); |
---|
706 | if (system(cmdstr) == 0) { |
---|
707 | int cx, cy, cz; |
---|
708 | std::ifstream ftri(fcells); |
---|
709 | while (!ftri.eof()) { |
---|
710 | ftri.getline(line,sizeof(line)-1); |
---|
711 | if (sscanf(line, "%d %d %d", &cx, &cy, &cz) == 3) { |
---|
712 | if (cx >= 4 && cy >= 4 && cz >= 4) { |
---|
713 | // skip first 4 boundary points |
---|
714 | xymesh.addCell(cx-4, cy-4, cz-4); |
---|
715 | } |
---|
716 | } |
---|
717 | } |
---|
718 | ftri.close(); |
---|
719 | } else { |
---|
720 | return result.error("triangularization failed"); |
---|
721 | } |
---|
722 | |
---|
723 | sprintf(cmdstr, "rm -f %s %s", fpts, fcells); |
---|
724 | system(cmdstr); |
---|
725 | } else if (sscanf(start, "object %d class regulararray count %d", &dummy, &nz) == 2) { |
---|
726 | // found z-grid |
---|
727 | } else if (sscanf(start, "origin %lg %lg %lg", &x0, &y0, &z0) == 3) { |
---|
728 | // found origin |
---|
729 | } else if (sscanf(start, "delta %lg %lg %lg", &ddx, &ddy, &ddz) == 3) { |
---|
730 | // found one of the delta lines |
---|
731 | if (ddx != 0.0) { dx = ddx; } |
---|
732 | else if (ddy != 0.0) { dy = ddy; } |
---|
733 | else if (ddz != 0.0) { dz = ddz; } |
---|
734 | } else if (sscanf(start, "object %d class array type %s rank 0 items %d data follows", &dummy, type, &npts) == 3) { |
---|
735 | if (isrect && (npts != nx*ny*nz)) { |
---|
736 | char mesg[256]; |
---|
737 | sprintf(mesg,"inconsistent data: expected %d points but found %d points", nx*ny*nz, npts); |
---|
738 | return result.error(mesg); |
---|
739 | } else if (!isrect && (npts != nxy*nz)) { |
---|
740 | char mesg[256]; |
---|
741 | sprintf(mesg,"inconsistent data: expected %d points but found %d points", nxy*nz, npts); |
---|
742 | return result.error(mesg); |
---|
743 | } |
---|
744 | break; |
---|
745 | } else if (sscanf(start, "object %d class array type %s rank 0 times %d data follows", &dummy, type, &npts) == 3) { |
---|
746 | if (npts != nx*ny*nz) { |
---|
747 | char mesg[256]; |
---|
748 | sprintf(mesg,"inconsistent data: expected %d points but found %d points", nx*ny*nz, npts); |
---|
749 | return result.error(mesg); |
---|
750 | } |
---|
751 | break; |
---|
752 | } |
---|
753 | } |
---|
754 | } |
---|
755 | |
---|
756 | // read data points |
---|
757 | if (!fin.eof()) { |
---|
758 | if (isrect) { |
---|
759 | Rappture::Mesh1D xgrid(x0, x0+nx*dx, nx); |
---|
760 | Rappture::Mesh1D ygrid(y0, y0+ny*dy, ny); |
---|
761 | Rappture::Mesh1D zgrid(z0, z0+nz*dz, nz); |
---|
762 | Rappture::FieldRect3D field(xgrid, ygrid, zgrid); |
---|
763 | |
---|
764 | double dval[6]; |
---|
765 | int nread = 0; |
---|
766 | int ix = 0; |
---|
767 | int iy = 0; |
---|
768 | int iz = 0; |
---|
769 | while (!fin.eof() && nread < npts) { |
---|
770 | fin.getline(line,sizeof(line)-1); |
---|
771 | if (fin.fail()) { |
---|
772 | return result.error("error reading data points"); |
---|
773 | } |
---|
774 | int n = sscanf(line, "%lg %lg %lg %lg %lg %lg", &dval[0], &dval[1], &dval[2], &dval[3], &dval[4], &dval[5]); |
---|
775 | |
---|
776 | for (int p=0; p < n; p++) { |
---|
777 | int nindex = iz*nx*ny + iy*nx + ix; |
---|
778 | field.define(nindex, dval[p]); |
---|
779 | nread++; |
---|
780 | if (++iz >= nz) { |
---|
781 | iz = 0; |
---|
782 | if (++iy >= ny) { |
---|
783 | iy = 0; |
---|
784 | ++ix; |
---|
785 | } |
---|
786 | } |
---|
787 | } |
---|
788 | } |
---|
789 | |
---|
790 | // make sure that we read all of the expected points |
---|
791 | if (nread != nx*ny*nz) { |
---|
792 | char mesg[256]; |
---|
793 | sprintf(mesg,"inconsistent data: expected %d points but found %d points", nx*ny*nz, nread); |
---|
794 | result.error(mesg); |
---|
795 | return result; |
---|
796 | } |
---|
797 | |
---|
798 | // figure out a good mesh spacing |
---|
799 | int nsample = 30; |
---|
800 | dx = field.rangeMax(Rappture::xaxis) - field.rangeMin(Rappture::xaxis); |
---|
801 | dy = field.rangeMax(Rappture::yaxis) - field.rangeMin(Rappture::yaxis); |
---|
802 | dz = field.rangeMax(Rappture::zaxis) - field.rangeMin(Rappture::zaxis); |
---|
803 | double dmin = pow((dx*dy*dz)/(nsample*nsample*nsample), 0.333); |
---|
804 | |
---|
805 | nx = (int)ceil(dx/dmin); |
---|
806 | ny = (int)ceil(dy/dmin); |
---|
807 | nz = (int)ceil(dz/dmin); |
---|
808 | |
---|
809 | #ifndef NV40 |
---|
810 | // must be an even power of 2 for older cards |
---|
811 | nx = (int)pow(2.0, ceil(log10((double)nx)/log10(2.0))); |
---|
812 | ny = (int)pow(2.0, ceil(log10((double)ny)/log10(2.0))); |
---|
813 | nz = (int)pow(2.0, ceil(log10((double)nz)/log10(2.0))); |
---|
814 | #endif |
---|
815 | |
---|
816 | float *cdata = new float[nx*ny*nz]; |
---|
817 | int ngen = 0; |
---|
818 | double nzero_min = 0.0; |
---|
819 | for (int iz=0; iz < nz; iz++) { |
---|
820 | double zval = z0 + iz*dmin; |
---|
821 | for (int iy=0; iy < ny; iy++) { |
---|
822 | double yval = y0 + iy*dmin; |
---|
823 | for (int ix=0; ix < nx; ix++) { |
---|
824 | double xval = x0 + ix*dmin; |
---|
825 | double v = field.value(xval,yval,zval); |
---|
826 | |
---|
827 | if (v != 0.0f && v < nzero_min) { |
---|
828 | nzero_min = v; |
---|
829 | } |
---|
830 | |
---|
831 | // scale all values [0-1], -1 => out of bounds |
---|
832 | v = (isnan(v)) ? -1.0 : v; |
---|
833 | |
---|
834 | cdata[ngen] = v; |
---|
835 | ++ngen; |
---|
836 | } |
---|
837 | } |
---|
838 | } |
---|
839 | |
---|
840 | float* data = computeGradient(cdata, nx, ny, nz, field.valueMin(), |
---|
841 | field.valueMax()); |
---|
842 | |
---|
843 | // Compute the gradient of this data. BE CAREFUL: center |
---|
844 | /* |
---|
845 | float *data = new float[4*nx*ny*nz]; |
---|
846 | |
---|
847 | double vmin = field.valueMin(); |
---|
848 | double dv = field.valueMax() - field.valueMin(); |
---|
849 | if (dv == 0.0) { dv = 1.0; } |
---|
850 | |
---|
851 | // generate the uniformly sampled data that we need for a volume |
---|
852 | int ngen = 0; |
---|
853 | double nzero_min = 0.0; |
---|
854 | for (int iz=0; iz < nz; iz++) { |
---|
855 | double zval = z0 + iz*dmin; |
---|
856 | for (int iy=0; iy < ny; iy++) { |
---|
857 | double yval = y0 + iy*dmin; |
---|
858 | for (int ix=0; ix < nx; ix++) { |
---|
859 | double xval = x0 + ix*dmin; |
---|
860 | double v = field.value(xval,yval,zval); |
---|
861 | |
---|
862 | if (v != 0.0f && v < nzero_min) |
---|
863 | { |
---|
864 | nzero_min = v; |
---|
865 | } |
---|
866 | |
---|
867 | // scale all values [0-1], -1 => out of bounds |
---|
868 | v = (isnan(v)) ? -1.0 : (v - vmin)/dv; |
---|
869 | |
---|
870 | data[ngen] = v; |
---|
871 | ngen += 4; |
---|
872 | } |
---|
873 | } |
---|
874 | } |
---|
875 | // Compute the gradient of this data. BE CAREFUL: center |
---|
876 | // calculation on each node to avoid skew in either direction. |
---|
877 | ngen = 0; |
---|
878 | for (int iz=0; iz < nz; iz++) { |
---|
879 | for (int iy=0; iy < ny; iy++) { |
---|
880 | for (int ix=0; ix < nx; ix++) { |
---|
881 | // gradient in x-direction |
---|
882 | double valm1 = (ix == 0) ? 0.0 : data[ngen-4]; |
---|
883 | double valp1 = (ix == nx-1) ? 0.0 : data[ngen+4]; |
---|
884 | if (valm1 < 0 || valp1 < 0) { |
---|
885 | data[ngen+1] = 0.0; |
---|
886 | } else { |
---|
887 | data[ngen+1] = ((valp1-valm1) + 1) * 0.5; // assume dx=1 |
---|
888 | } |
---|
889 | |
---|
890 | // gradient in y-direction |
---|
891 | valm1 = (iy == 0) ? 0.0 : data[ngen-4*nx]; |
---|
892 | valp1 = (iy == ny-1) ? 0.0 : data[ngen+4*nx]; |
---|
893 | if (valm1 < 0 || valp1 < 0) { |
---|
894 | data[ngen+2] = 0.0; |
---|
895 | } else { |
---|
896 | //data[ngen+2] = valp1-valm1; // assume dy=1 |
---|
897 | data[ngen+2] = ((valp1-valm1) + 1) * 0.5; // assume dx=1 |
---|
898 | } |
---|
899 | |
---|
900 | // gradient in z-direction |
---|
901 | valm1 = (iz == 0) ? 0.0 : data[ngen-4*nx*ny]; |
---|
902 | valp1 = (iz == nz-1) ? 0.0 : data[ngen+4*nx*ny]; |
---|
903 | if (valm1 < 0 || valp1 < 0) { |
---|
904 | data[ngen+3] = 0.0; |
---|
905 | } else { |
---|
906 | //data[ngen+3] = valp1-valm1; // assume dz=1 |
---|
907 | data[ngen+3] = ((valp1-valm1) + 1) * 0.5; // assume dz=1 |
---|
908 | } |
---|
909 | |
---|
910 | ngen += 4; |
---|
911 | } |
---|
912 | } |
---|
913 | } |
---|
914 | */ |
---|
915 | |
---|
916 | Volume *volPtr; |
---|
917 | volPtr = NanoVis::load_volume(index, nx, ny, nz, 4, data, |
---|
918 | field.valueMin(), field.valueMax(), nzero_min); |
---|
919 | volPtr->set_limits(NanoVis::X, field.rangeMin(Rappture::xaxis), |
---|
920 | field.rangeMax(Rappture::xaxis)); |
---|
921 | volPtr->set_limits(NanoVis::Y, field.rangeMin(Rappture::yaxis), |
---|
922 | field.rangeMax(Rappture::yaxis)); |
---|
923 | volPtr->set_limits(NanoVis::Z, field.rangeMin(Rappture::zaxis), |
---|
924 | field.rangeMax(Rappture::zaxis)); |
---|
925 | // TBD.. |
---|
926 | // POINTSET |
---|
927 | /* |
---|
928 | PointSet* pset = new PointSet(); |
---|
929 | pset->initialize(volume[index], (float*) data); |
---|
930 | pset->setVisible(true); |
---|
931 | NanoVis::pointSet.push_back(pset); |
---|
932 | updateColor(pset); |
---|
933 | NanoVis::volume[index]->pointsetIndex = NanoVis::pointSet.size() - 1; |
---|
934 | */ |
---|
935 | |
---|
936 | delete [] data; |
---|
937 | |
---|
938 | } else { |
---|
939 | Rappture::Mesh1D zgrid(z0, z0+nz*dz, nz); |
---|
940 | Rappture::FieldPrism3D field(xymesh, zgrid); |
---|
941 | |
---|
942 | double dval; |
---|
943 | int nread = 0; |
---|
944 | int ixy = 0; |
---|
945 | int iz = 0; |
---|
946 | while (!fin.eof() && nread < npts) { |
---|
947 | fin >> dval; |
---|
948 | if (fin.fail()) { |
---|
949 | char mesg[256]; |
---|
950 | sprintf(mesg,"after %d of %d points: can't read number", |
---|
951 | nread, npts); |
---|
952 | return result.error(mesg); |
---|
953 | } else { |
---|
954 | int nid = nxy*iz + ixy; |
---|
955 | field.define(nid, dval); |
---|
956 | |
---|
957 | nread++; |
---|
958 | if (++iz >= nz) { |
---|
959 | iz = 0; |
---|
960 | ixy++; |
---|
961 | } |
---|
962 | } |
---|
963 | } |
---|
964 | |
---|
965 | // make sure that we read all of the expected points |
---|
966 | if (nread != nxy*nz) { |
---|
967 | char mesg[256]; |
---|
968 | sprintf(mesg,"inconsistent data: expected %d points but found %d points", nxy*nz, nread); |
---|
969 | return result.error(mesg); |
---|
970 | } |
---|
971 | |
---|
972 | // figure out a good mesh spacing |
---|
973 | int nsample = 30; |
---|
974 | x0 = field.rangeMin(Rappture::xaxis); |
---|
975 | dx = field.rangeMax(Rappture::xaxis) - field.rangeMin(Rappture::xaxis); |
---|
976 | y0 = field.rangeMin(Rappture::yaxis); |
---|
977 | dy = field.rangeMax(Rappture::yaxis) - field.rangeMin(Rappture::yaxis); |
---|
978 | z0 = field.rangeMin(Rappture::zaxis); |
---|
979 | dz = field.rangeMax(Rappture::zaxis) - field.rangeMin(Rappture::zaxis); |
---|
980 | double dmin = pow((dx*dy*dz)/(nsample*nsample*nsample), 0.333); |
---|
981 | |
---|
982 | nx = (int)ceil(dx/dmin); |
---|
983 | ny = (int)ceil(dy/dmin); |
---|
984 | nz = (int)ceil(dz/dmin); |
---|
985 | #ifndef NV40 |
---|
986 | // must be an even power of 2 for older cards |
---|
987 | nx = (int)pow(2.0, ceil(log10((double)nx)/log10(2.0))); |
---|
988 | ny = (int)pow(2.0, ceil(log10((double)ny)/log10(2.0))); |
---|
989 | nz = (int)pow(2.0, ceil(log10((double)nz)/log10(2.0))); |
---|
990 | #endif |
---|
991 | float *data = new float[4*nx*ny*nz]; |
---|
992 | |
---|
993 | double vmin = field.valueMin(); |
---|
994 | double dv = field.valueMax() - field.valueMin(); |
---|
995 | if (dv == 0.0) { dv = 1.0; } |
---|
996 | |
---|
997 | // generate the uniformly sampled data that we need for a volume |
---|
998 | int ngen = 0; |
---|
999 | double nzero_min = 0.0; |
---|
1000 | for (iz=0; iz < nz; iz++) { |
---|
1001 | double zval = z0 + iz*dmin; |
---|
1002 | for (int iy=0; iy < ny; iy++) { |
---|
1003 | double yval = y0 + iy*dmin; |
---|
1004 | for (int ix=0; ix < nx; ix++) { |
---|
1005 | double xval = x0 + ix*dmin; |
---|
1006 | double v = field.value(xval,yval,zval); |
---|
1007 | |
---|
1008 | if (v != 0.0f && v < nzero_min) |
---|
1009 | { |
---|
1010 | nzero_min = v; |
---|
1011 | } |
---|
1012 | // scale all values [0-1], -1 => out of bounds |
---|
1013 | v = (isnan(v)) ? -1.0 : (v - vmin)/dv; |
---|
1014 | data[ngen] = v; |
---|
1015 | |
---|
1016 | ngen += 4; |
---|
1017 | } |
---|
1018 | } |
---|
1019 | } |
---|
1020 | |
---|
1021 | // Compute the gradient of this data. BE CAREFUL: center |
---|
1022 | // calculation on each node to avoid skew in either direction. |
---|
1023 | ngen = 0; |
---|
1024 | for (int iz=0; iz < nz; iz++) { |
---|
1025 | for (int iy=0; iy < ny; iy++) { |
---|
1026 | for (int ix=0; ix < nx; ix++) { |
---|
1027 | // gradient in x-direction |
---|
1028 | double valm1 = (ix == 0) ? 0.0 : data[ngen-1]; |
---|
1029 | double valp1 = (ix == nx-1) ? 0.0 : data[ngen+1]; |
---|
1030 | if (valm1 < 0 || valp1 < 0) { |
---|
1031 | data[ngen+1] = 0.0; |
---|
1032 | } else { |
---|
1033 | //data[ngen+1] = valp1-valm1; // assume dx=1 |
---|
1034 | data[ngen+1] = ((valp1-valm1) + 1) * 0.5; // assume dx=1 |
---|
1035 | } |
---|
1036 | |
---|
1037 | // gradient in y-direction |
---|
1038 | valm1 = (iy == 0) ? 0.0 : data[ngen-4*nx]; |
---|
1039 | valp1 = (iy == ny-1) ? 0.0 : data[ngen+4*nx]; |
---|
1040 | if (valm1 < 0 || valp1 < 0) { |
---|
1041 | data[ngen+2] = 0.0; |
---|
1042 | } else { |
---|
1043 | //data[ngen+2] = valp1-valm1; // assume dy=1 |
---|
1044 | data[ngen+2] = ((valp1-valm1) + 1) * 0.5; // assume dy=1 |
---|
1045 | } |
---|
1046 | |
---|
1047 | // gradient in z-direction |
---|
1048 | valm1 = (iz == 0) ? 0.0 : data[ngen-4*nx*ny]; |
---|
1049 | valp1 = (iz == nz-1) ? 0.0 : data[ngen+4*nx*ny]; |
---|
1050 | if (valm1 < 0 || valp1 < 0) { |
---|
1051 | data[ngen+3] = 0.0; |
---|
1052 | } else { |
---|
1053 | //data[ngen+3] = valp1-valm1; // assume dz=1 |
---|
1054 | data[ngen+3] = ((valp1-valm1) + 1) * 0.5; // assume dz=1 |
---|
1055 | } |
---|
1056 | |
---|
1057 | ngen += 4; |
---|
1058 | } |
---|
1059 | } |
---|
1060 | } |
---|
1061 | |
---|
1062 | Volume *volPtr; |
---|
1063 | volPtr = NanoVis::load_volume(index, nx, ny, nz, 4, data, |
---|
1064 | field.valueMin(), field.valueMax(), nzero_min); |
---|
1065 | volPtr->set_limits(NanoVis::X, field.rangeMin(Rappture::xaxis), |
---|
1066 | field.rangeMax(Rappture::xaxis)); |
---|
1067 | volPtr->set_limits(NanoVis::Y, field.rangeMin(Rappture::yaxis), |
---|
1068 | field.rangeMax(Rappture::yaxis)); |
---|
1069 | volPtr->set_limits(NanoVis::Z, field.rangeMin(Rappture::zaxis), |
---|
1070 | field.rangeMax(Rappture::zaxis)); |
---|
1071 | |
---|
1072 | // TBD.. |
---|
1073 | // POINTSET |
---|
1074 | /* |
---|
1075 | PointSet* pset = new PointSet(); |
---|
1076 | pset->initialize(volume[index], (float*) data); |
---|
1077 | pset->setVisible(true); |
---|
1078 | NanoVis::pointSet.push_back(pset); |
---|
1079 | updateColor(pset); |
---|
1080 | NanoVis::volume[index]->pointsetIndex = NanoVis::pointSet.size() - 1; |
---|
1081 | */ |
---|
1082 | |
---|
1083 | |
---|
1084 | delete [] data; |
---|
1085 | } |
---|
1086 | } else { |
---|
1087 | return result.error("data not found in stream"); |
---|
1088 | } |
---|
1089 | |
---|
1090 | // |
---|
1091 | // Center this new volume on the origin. |
---|
1092 | // |
---|
1093 | float dx0 = -0.5; |
---|
1094 | float dy0 = -0.5*dy/dx; |
---|
1095 | float dz0 = -0.5*dz/dx; |
---|
1096 | NanoVis::volume[index]->move(Vector3(dx0, dy0, dz0)); |
---|
1097 | return result; |
---|
1098 | } |
---|