# # ChangeLog for trunk/optimizer/src # # Generated by Trac 1.0.13 # Mar 28, 2024 5:21:23 PM Mon, 02 Jun 2008 19:55:07 GMT liveletlive [1010] * trunk/optimizer/src/fitfunc/ff_modules_for_discrete_params.c (modified) Comments and a small change made. Mon, 02 Jun 2008 19:38:16 GMT liveletlive [1009] * trunk/optimizer/src/fitfunc/ff_modules_for_discrete_params.c (added) Placeholder code for helper modules for fitness function calculation ... Fri, 30 May 2008 20:58:42 GMT liveletlive [1008] * trunk/optimizer/src/fitfunc/a.out (modified) * trunk/optimizer/src/fitfunc/ff_helper_modules_for_curves.c (moved) renamed the file to something more appropriate. Fri, 30 May 2008 20:48:49 GMT liveletlive [1007] * trunk/optimizer/src/fitfunc (added) * trunk/optimizer/src/fitfunc/a.out (added) * trunk/optimizer/src/fitfunc/fitnessfunctions.c (added) This Folder is for modules that will help the user write his own ... Wed, 02 Apr 2008 21:32:58 GMT gah [986] * trunk/optimizer/src/Makefile.in (modified) * trunk/optimizer/src/pgapack/pgapack/examples/c/classic (modified) * trunk/optimizer/src/pgapack/pgapack/examples/c/dejong (modified) * trunk/optimizer/src/pgapack/pgapack/examples/c/example (modified) * trunk/optimizer/src/pgapack/pgapack/examples/c/maxbit (modified) * trunk/optimizer/src/pgapack/pgapack/examples/c/maxchar (modified) * trunk/optimizer/src/pgapack/pgapack/examples/c/maxint (modified) * trunk/optimizer/src/pgapack/pgapack/examples/c/name (modified) * trunk/optimizer/src/pgapack/pgapack/examples/c/namefull (modified) * trunk/optimizer/src/pgapack/pgapack/examples/c/udtstr (modified) * trunk/optimizer/src/pgapack/pgapack/source/parallel.c (modified) * trunk/optimizer/src/pgapack/pgapack/source/pga.c (modified) * trunk/optimizer/src/pgapack/pgapack/source/stop.c (modified) * trunk/optimizer/src/pgapack/pgapack/test/instverf (modified) * trunk/optimizer/src/plugin_pgapack.c (modified) * trunk/optimizer/src/rp_optimizer_tcl.c (modified) added global pgapack_abort flag to plugin and abort operation to ... Wed, 12 Mar 2008 18:39:29 GMT gah [951] * trunk/Makefile.in (modified) * trunk/gui/Makefile.in (modified) * trunk/optimizer/src/Makefile.in (modified) * trunk/src/Makefile.in (modified) * trunk/src/matlab/Makefile.in (modified) * trunk/src/octave/Makefile.in (modified) * trunk/src/tcl/Makefile.in (modified) * trunk/src2/core/Makefile.in (modified) * trunk/vizservers/nanoscale/Makefile.in (modified) * trunk/vizservers/nanovis/Makefile.in (modified) * trunk/vizservers/nanovis/R2/src/Makefile.in (modified) * trunk/vizservers/nanovis/imgLoaders/Makefile.in (modified) * trunk/vizservers/nanovis/newmat11/Makefile.in (modified) * trunk/vizservers/nanovis/transfer-function/Makefile.in (modified) * trunk/vizservers/pymolproxy/Makefile.in (modified) added datarootdir to Makefile.in Wed, 12 Mar 2008 00:42:08 GMT gah [947] * trunk/optimizer/src/configure (added) add configure Tue, 11 Mar 2008 23:23:01 GMT gah [943] * trunk/optimizer/src/configure.in (modified) Makefile fixups Tue, 11 Mar 2008 23:22:12 GMT gah [942] * trunk/Makefile.in (modified) * trunk/configure (modified) * trunk/configure.in (modified) * trunk/examples/zoo/field/tool.xml (modified) * trunk/gui/apps/driver (modified) * trunk/optimizer/src/Makefile.in (modified) * trunk/optimizer/src/configure.in (modified) * trunk/src/Makefile.in (modified) * trunk/src/matlab/Makefile.in (modified) * trunk/src/octave/Makefile.in (modified) * trunk/src/tcl/Makefile.in (modified) Makefile fixups Sun, 24 Feb 2008 04:16:38 GMT mmc [903] * trunk/gui/scripts/analyzer.tcl (modified) * trunk/gui/scripts/tool.tcl (modified) * trunk/optimizer/examples/simple.tcl (modified) * trunk/optimizer/src/plugin_pgapack.c (modified) * trunk/optimizer/src/rp_optimizer_tcl.c (modified) * trunk/optimizer/tests/aaa.test (modified) Final tweaks on the optimization package. The demo now works ... Fri, 22 Feb 2008 22:08:40 GMT mmc [899] * trunk/optimizer/examples/rosenbrock.tcl (added) * trunk/optimizer/examples/simple.tcl (modified) * trunk/optimizer/examples/tool.xml (modified) * trunk/optimizer/examples/visualize.tcl (added) * trunk/optimizer/src/plugin_pgapack.c (modified) * trunk/optimizer/src/rp_optimizer.c (modified) * trunk/optimizer/src/rp_optimizer.h (modified) * trunk/optimizer/src/rp_optimizer_plugin.h (deleted) * trunk/optimizer/src/rp_optimizer_tcl.c (modified) Added a -fitness option to the "perform" operation. Right now, you ... Fri, 22 Feb 2008 02:43:57 GMT mmc [898] * trunk/optimizer/examples (added) * trunk/optimizer/examples/simple.tcl (added) * trunk/optimizer/examples/tool.xml (added) * trunk/optimizer/src/Makefile.in (modified) * trunk/optimizer/src/configure.in (modified) * trunk/optimizer/src/pgapack/pgapack/config.status (deleted) * trunk/optimizer/src/pgapack/pgapack/examples/c/Makefile (deleted) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/Makefile (deleted) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/Makefile (deleted) * trunk/optimizer/src/pgapack/pgapack/source/Makefile (deleted) * trunk/optimizer/src/pgapack/pgapack/test/Makefile (deleted) * trunk/optimizer/src/plugin_pgapack.c (modified) * trunk/optimizer/src/rp_optimizer.c (modified) * trunk/optimizer/src/rp_optimizer.h (modified) * trunk/optimizer/src/rp_optimizer_plugin.h (modified) * trunk/optimizer/src/rp_optimizer_tcl.c (modified) * trunk/optimizer/src/rp_tcloptions.c (modified) * trunk/optimizer/src/rp_tcloptions.h (modified) * trunk/optimizer/tests/aaa.test (modified) * trunk/optimizer/tests/pgapack.test (added) Optimization part is getting better. Fleshed out the plug-in for ... Tue, 19 Feb 2008 22:48:42 GMT mmc [897] * trunk/optimizer/src/Makefile (deleted) * trunk/optimizer/src/Makefile.in (added) * trunk/optimizer/src/aclocal.m4 (added) * trunk/optimizer/src/configure.in (added) * trunk/optimizer/src/pkgIndex.tcl.in (added) * trunk/optimizer/src/plugin_pgapack.c (added) * trunk/optimizer/src/rp_optimizer.c (modified) * trunk/optimizer/src/rp_optimizer.h (modified) * trunk/optimizer/src/rp_optimizer_plugin.h (added) * trunk/optimizer/src/rp_optimizer_tcl.c (added) * trunk/optimizer/src/rp_tcloptions.c (added) * trunk/optimizer/src/rp_tcloptions.h (added) * trunk/optimizer/src/tclconfig (added) * trunk/optimizer/src/tclconfig/config.guess (added) * trunk/optimizer/src/tclconfig/config.sub (added) * trunk/optimizer/src/tclconfig/install-sh (added) * trunk/optimizer/src/tclconfig/mkindex.tcl (added) * trunk/optimizer/src/tclconfig/mkinstalldirs (added) * trunk/optimizer/src/tclconfig/patchlevel.tcl (added) * trunk/optimizer/src/tclconfig/tcl.m4 (added) * trunk/optimizer/tests/aaa.test (added) * trunk/optimizer/tests/all.tcl (added) Improved the Rappture optimization API to include Tcl bindings. ... Wed, 14 Nov 2007 21:55:14 GMT liveletlive [816] * trunk/optimizer/src/pgapack/pgapack (added) * trunk/optimizer/src/pgapack/pgapack/CHANGES (added) * trunk/optimizer/src/pgapack/pgapack/COPYRIGHT (added) * trunk/optimizer/src/pgapack/pgapack/Makefile (added) * trunk/optimizer/src/pgapack/pgapack/Makefile.in (added) * trunk/optimizer/src/pgapack/pgapack/README (added) * trunk/optimizer/src/pgapack/pgapack/config.status (added) * trunk/optimizer/src/pgapack/pgapack/configure (added) * trunk/optimizer/src/pgapack/pgapack/configure.in (added) * trunk/optimizer/src/pgapack/pgapack/docs (added) * trunk/optimizer/src/pgapack/pgapack/docs/user_guide.ps (added) * trunk/optimizer/src/pgapack/pgapack/examples (added) * trunk/optimizer/src/pgapack/pgapack/examples/Makefile (added) * trunk/optimizer/src/pgapack/pgapack/examples/Makefile.in (added) * trunk/optimizer/src/pgapack/pgapack/examples/README (added) * trunk/optimizer/src/pgapack/pgapack/examples/c (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/Makefile (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/Makefile.in (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/README (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/classic (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/classic.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/dejong (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/dejong.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/example (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/example.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/maxbit (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/maxbit.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/maxchar (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/maxchar.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/maxint (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/maxint.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/name (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/name.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/namefull (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/namefull.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/sampleOptimization (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/sampleOptimization.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/test.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/udtstr (added) * trunk/optimizer/src/pgapack/pgapack/examples/c/udtstr.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/Makefile (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/Makefile.in (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/README (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/classic.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/dejong.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/example.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/maxbit.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/maxchar.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/maxint.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/name.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/namefull.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/fortran/pgapackf.h (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/Makefile (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/Makefile.in (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/README (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/grdfcn77.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/hesfcn77.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/objfcn77.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/pgapackf.h (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/ssqfcn77.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/ssqjac77.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/testprog.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/vecfcn77.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/mgh/vecjac77.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/templates (added) * trunk/optimizer/src/pgapack/pgapack/examples/templates/README (added) * trunk/optimizer/src/pgapack/pgapack/examples/templates/uf_native.c (added) * trunk/optimizer/src/pgapack/pgapack/examples/templates/uf_native.f (added) * trunk/optimizer/src/pgapack/pgapack/examples/templates/uf_new.c (added) * trunk/optimizer/src/pgapack/pgapack/include (added) * trunk/optimizer/src/pgapack/pgapack/include/fakempi_h (added) * trunk/optimizer/src/pgapack/pgapack/include/fakempif_h (added) * trunk/optimizer/src/pgapack/pgapack/include/pgapack.h (added) * trunk/optimizer/src/pgapack/pgapack/include/pgapackf.h (added) * trunk/optimizer/src/pgapack/pgapack/lib (added) * trunk/optimizer/src/pgapack/pgapack/lib/generic (added) * trunk/optimizer/src/pgapack/pgapack/lib/linux (added) * trunk/optimizer/src/pgapack/pgapack/man (added) * trunk/optimizer/src/pgapack/pgapack/man/man1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAEncodeIntegerAsBinary.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAEncodeIntegerAsGrayCode.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAEncodeRealAsBinary.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAEncodeRealAsGrayCode.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAEvaluate.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAFitness.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetBinaryAllele.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetCharacterAllele.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetEvaluation.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetEvaluationUpToDateFlag.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetFitness.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetFitnessCmaxValue.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetFitnessMinType.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetFitnessType.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetIntegerAllele.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetIntegerFromBinary.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetIntegerFromGrayCode.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetMaxFitnessRank.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetRealAllele.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetRealFromBinary.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGAGetRealFromGrayCode.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGARank.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGASetBinaryAllele.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGASetCharacterAllele.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGASetEvaluation.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGASetEvaluationUpToDateFlag.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGASetFitnessCmaxValue.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGASetFitnessMinType.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGASetFitnessType.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGASetIntegerAllele.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGASetMaxFitnessRank.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man1/PGASetRealAllele.1 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGAGetBinaryInitProb.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGAGetIntegerInitType.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGAGetMaxIntegerInitValue.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGAGetMaxRealInitValue.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGAGetMinIntegerInitValue.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGAGetMinRealInitValue.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGAGetRandomInitFlag.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGAGetRealInitType.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGASetBinaryInitProb.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGASetCharacterInitType.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGASetIntegerInitPermute.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGASetIntegerInitRange.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGASetRandomInitFlag.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGASetRealInitPercent.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man2/PGASetRealInitRange.2 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGACrossover.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetCrossoverProb.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetCrossoverType.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetMutationBoundedFlag.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetMutationIntegerValue.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetMutationProb.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetMutationRealValue.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetMutationType.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetPTournamentProb.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetRestartAlleleChangeProb.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetRestartFlag.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetRestartFrequencyValue.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetSelectType.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAGetUniformCrossoverProb.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGAMutate.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGARestart.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASelect.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASelectNextIndex.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetCrossoverProb.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetCrossoverType.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetMutationBoundedFlag.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetMutationIntegerValue.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetMutationProb.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetMutationRealValue.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetPTournamentProb.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetRestartAlleleChangeProb.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetRestartFlag.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetRestartFrequencyValue.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetSelectType.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man3/PGASetUniformCrossoverProb.3 (added) * trunk/optimizer/src/pgapack/pgapack/man/man4 (added) * trunk/optimizer/src/pgapack/pgapack/man/man4/PGABuildDatatype.4 (added) * trunk/optimizer/src/pgapack/pgapack/man/man4/PGAGetCommunicator.4 (added) * trunk/optimizer/src/pgapack/pgapack/man/man4/PGAGetNumProcs.4 (added) * trunk/optimizer/src/pgapack/pgapack/man/man4/PGAGetRank.4 (added) * trunk/optimizer/src/pgapack/pgapack/man/man4/PGAReceiveIndividual.4 (added) * trunk/optimizer/src/pgapack/pgapack/man/man4/PGASendIndividual.4 (added) * trunk/optimizer/src/pgapack/pgapack/man/man4/PGASendReceiveIndividual.4 (added) * trunk/optimizer/src/pgapack/pgapack/man/man4/PGASetCommunicator.4 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGACheckSum.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGAGetBestIndex.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGAGetRandomSeed.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGAGetWorstIndex.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGAHammingDistance.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGAMean.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGARandom01.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGARandomFlip.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGARandomGaussian.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGARandomInterval.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGARandomUniform.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGARound.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGASetRandomSeed.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man5/PGAStddev.5 (added) * trunk/optimizer/src/pgapack/pgapack/man/man6 (added) * trunk/optimizer/src/pgapack/pgapack/man/man6/PGAError.6 (added) * trunk/optimizer/src/pgapack/pgapack/man/man6/PGAGetMaxMachineDoubleValue.6 (added) * trunk/optimizer/src/pgapack/pgapack/man/man6/PGAGetMaxMachineIntValue.6 (added) * trunk/optimizer/src/pgapack/pgapack/man/man6/PGAGetMinMachineDoubleValue.6 (added) * trunk/optimizer/src/pgapack/pgapack/man/man6/PGAGetMinMachineIntValue.6 (added) * trunk/optimizer/src/pgapack/pgapack/man/man7 (added) * 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trunk/optimizer/src/pgapack/pgapack/source/fitness.c (added) * trunk/optimizer/src/pgapack/pgapack/source/hamming.c (added) * trunk/optimizer/src/pgapack/pgapack/source/heap.c (added) * trunk/optimizer/src/pgapack/pgapack/source/integer.c (added) * trunk/optimizer/src/pgapack/pgapack/source/mpi_stub.c (added) * trunk/optimizer/src/pgapack/pgapack/source/mutation.c (added) * trunk/optimizer/src/pgapack/pgapack/source/parallel.c (added) * trunk/optimizer/src/pgapack/pgapack/source/pga.c (added) * trunk/optimizer/src/pgapack/pgapack/source/pop.c (added) * trunk/optimizer/src/pgapack/pgapack/source/random.c (added) * trunk/optimizer/src/pgapack/pgapack/source/real.c (added) * trunk/optimizer/src/pgapack/pgapack/source/report.c (added) * trunk/optimizer/src/pgapack/pgapack/source/restart.c (added) * trunk/optimizer/src/pgapack/pgapack/source/select.c (added) * trunk/optimizer/src/pgapack/pgapack/source/stop.c (added) * trunk/optimizer/src/pgapack/pgapack/source/system.c (added) * trunk/optimizer/src/pgapack/pgapack/source/user.c (added) * trunk/optimizer/src/pgapack/pgapack/source/utility.c (added) * trunk/optimizer/src/pgapack/pgapack/test (added) * trunk/optimizer/src/pgapack/pgapack/test/Makefile (added) * trunk/optimizer/src/pgapack/pgapack/test/Makefile.in (added) * trunk/optimizer/src/pgapack/pgapack/test/README (added) * trunk/optimizer/src/pgapack/pgapack/test/instverf (added) * trunk/optimizer/src/pgapack/pgapack/test/instverf.c (added) * trunk/optimizer/src/pgapack/pgapack/test/instverf.data (added) * trunk/optimizer/src/pgapack/pgapack/test/pgapackf.h (added) * trunk/optimizer/src/pgapack/pgapack/util (added) * trunk/optimizer/src/pgapack/pgapack/util/README (added) * trunk/optimizer/src/pgapack/pgapack/util/convertfortran.pl (added) * trunk/optimizer/src/pgapack/pgapack/util/upgrade_script.pl (added) * trunk/optimizer/src/pgapack/pgapack/util/wordsizes.c (added) Committing the newer version of PGAPack. Wed, 14 Nov 2007 19:06:25 GMT liveletlive [815] * trunk/optimizer/src/pgapack/gekco/pgapack (added) * trunk/optimizer/src/pgapack/gekco/pgapack/CHANGES (added) * trunk/optimizer/src/pgapack/gekco/pgapack/COPYRIGHT (added) * trunk/optimizer/src/pgapack/gekco/pgapack/INSTALL_gekco.txt (added) * trunk/optimizer/src/pgapack/gekco/pgapack/Makefile (added) * trunk/optimizer/src/pgapack/gekco/pgapack/Makefile.in (added) * trunk/optimizer/src/pgapack/gekco/pgapack/README (added) * trunk/optimizer/src/pgapack/gekco/pgapack/config.status (added) * trunk/optimizer/src/pgapack/gekco/pgapack/config_gekco (added) * trunk/optimizer/src/pgapack/gekco/pgapack/configure (added) * trunk/optimizer/src/pgapack/gekco/pgapack/configure.in (added) * trunk/optimizer/src/pgapack/gekco/pgapack/docs (added) * trunk/optimizer/src/pgapack/gekco/pgapack/docs/user_guide.ps (added) * trunk/optimizer/src/pgapack/gekco/pgapack/examples (added) * trunk/optimizer/src/pgapack/gekco/pgapack/examples/Makefile (added) * 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trunk/optimizer/src/pgapack/gekco/pgapack/man/man1/PGASetEvaluation.1 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man1/PGASetEvaluationUpToDateFlag.1 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man1/PGASetFitnessCmaxValue.1 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man1/PGASetFitnessMinType.1 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man1/PGASetFitnessType.1 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man1/PGASetIntegerAllele.1 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man1/PGASetMaxFitnessRank.1 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man1/PGASetRealAllele.1 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man2 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man2/PGAGetBinaryInitProb.2 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man2/PGAGetIntegerInitType.2 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man2/PGAGetMaxIntegerInitValue.2 (added) * 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trunk/optimizer/src/pgapack/gekco/pgapack/man/man2/PGASetRealInitRange.2 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGACrossover.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetCrossoverProb.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetCrossoverType.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetMutationBoundedFlag.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetMutationIntegerValue.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetMutationProb.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetMutationRealValue.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetMutationType.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetPTournamentProb.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetRestartAlleleChangeProb.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetRestartFlag.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetRestartFrequencyValue.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetSelectType.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAGetUniformCrossoverProb.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGAMutate.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGARestart.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASelect.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASelectNextIndex.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetCrossoverProb.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetCrossoverType.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetMutationBoundedFlag.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetMutationIntegerValue.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetMutationProb.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetMutationRealValue.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetPTournamentProb.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetRestartAlleleChangeProb.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetRestartFlag.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetRestartFrequencyValue.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetSelectType.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man3/PGASetUniformCrossoverProb.3 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man4 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man4/PGABuildDatatype.4 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man4/PGAGetCommunicator.4 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man4/PGAGetNumProcs.4 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man4/PGAGetRank.4 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man4/PGAReceiveIndividual.4 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man4/PGASendIndividual.4 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man4/PGASendReceiveIndividual.4 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man4/PGASetCommunicator.4 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGACheckSum.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGAGetBestIndex.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGAGetRandomSeed.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGAGetWorstIndex.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGAHammingDistance.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGAMean.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGARandom01.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGARandomFlip.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGARandomGaussian.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGARandomInterval.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGARandomUniform.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGARound.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGASetRandomSeed.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man5/PGAStddev.5 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man6 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man6/PGAError.6 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man6/PGAGetMaxMachineDoubleValue.6 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man6/PGAGetMaxMachineIntValue.6 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man6/PGAGetMinMachineDoubleValue.6 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man6/PGAGetMinMachineIntValue.6 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man7 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man7/PGAGetPrintFrequencyValue.7 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man7/PGAPrintContextVariable.7 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man7/PGAPrintIndividual.7 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man7/PGAPrintPopulation.7 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man7/PGAPrintReport.7 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man7/PGAPrintString.7 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man7/PGASetPrintFrequencyValue.7 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man7/PGASetPrintOptions.7 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAChange.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGACheckStoppingConditions.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGACopyIndividual.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGACreate.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGADestroy.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGADone.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGADuplicate.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetDataType.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetGAIterValue.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetMaxGAIterValue.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetMutationAndCrossoverFlag.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetMutationOrCrossoverFlag.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetNoDuplicatesFlag.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetNumReplaceValue.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetOptDirFlag.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetPopReplaceType.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetPopSize.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetSortedPopIndex.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetStoppingRuleType.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAGetStringLength.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGARun.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGARunGM.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGARunMutationAndCrossover.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGARunMutationOrCrossover.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetMaxGAIterValue.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetMaxNoChangeValue.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetMaxSimilarityValue.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetMutationAndCrossoverFlag.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetMutationOrCrossoverFlag.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetNoDuplicatesFlag.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetNumReplaceValue.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetPopReplaceType.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetPopSize.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetStoppingRuleType.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetUp.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASetUserFunction.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGASortPop.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/man8/PGAUpdateGeneration.8 (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/mandesc (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/manl (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/manl/PGAClearDebugLevel.l (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/manl/PGAClearDebugLevelByName.l (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/manl/PGADebugPrint.l (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/manl/PGASetDebugLevel.l (added) * trunk/optimizer/src/pgapack/gekco/pgapack/man/manl/PGASetDebugLevelByName.l (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/Makefile (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/Makefile.in (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/binary.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/char.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/cmdline.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/create.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/cross.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/debug.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/duplcate.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/evaluate.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/f2c.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/fitness.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/hamming.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/heap.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/integer.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/mpi_stub.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/mutation.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/parallel.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/pga.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/pop.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/random.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/real.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/report.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/restart.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/select.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/stop.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/system.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/user.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/source/utility.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/test (added) * trunk/optimizer/src/pgapack/gekco/pgapack/test/Makefile (added) * trunk/optimizer/src/pgapack/gekco/pgapack/test/Makefile.in (added) * trunk/optimizer/src/pgapack/gekco/pgapack/test/README (added) * trunk/optimizer/src/pgapack/gekco/pgapack/test/instverf.c (added) * trunk/optimizer/src/pgapack/gekco/pgapack/test/instverf.data (added) * trunk/optimizer/src/pgapack/gekco/pgapack/test/mpif.h (added) * trunk/optimizer/src/pgapack/gekco/pgapack/test/pgapackf.h (added) * trunk/optimizer/src/pgapack/gekco/pgapack/util (added) * trunk/optimizer/src/pgapack/gekco/pgapack/util/README (added) * trunk/optimizer/src/pgapack/gekco/pgapack/util/convertfortran.pl (added) * trunk/optimizer/src/pgapack/gekco/pgapack/util/upgrade_script.pl (added) * trunk/optimizer/src/pgapack/gekco/pgapack/util/wordsizes.c (added) Committing the /tmp/gekco/pgapack folder that contains the older ... Wed, 14 Nov 2007 19:04:37 GMT liveletlive [814] * trunk/optimizer/src/pgapack/gekco (added) Committing the /tmp/gekco/pgapack folder that contains the older ... Wed, 14 Nov 2007 18:29:26 GMT liveletlive [813] * trunk/optimizer/src/pgapack (moved) renaming the folder Wed, 14 Nov 2007 18:23:39 GMT liveletlive [812] * trunk/optimizer/src/PGAPack_gekco (added) This is the folder meant to be for Prof. Klimeck's modified version ... Fri, 02 Nov 2007 15:23:19 GMT mmc [809] * trunk/optimizer (added) * trunk/optimizer/src (added) * trunk/optimizer/src/Makefile (added) * trunk/optimizer/src/rp_optimizer.c (added) * trunk/optimizer/src/rp_optimizer.h (added) * trunk/optimizer/src/test.c (added) * trunk/optimizer/tests (added) Created the initial API for the optimizer. Type "make" in this ...