# # ChangeLog for trunk # # Generated by Trac 1.0.13 # Jul 16, 2024 12:39:11 PM Wed, 11 Jul 2007 20:34:29 GMT mmc [781] * trunk/gui/scripts/controlOwner.tcl (modified) * trunk/gui/scripts/drawing.tcl (added) * trunk/gui/scripts/drawingentry.tcl (added) * trunk/gui/scripts/page.tcl (modified) Rough version of a drawing element that can be used for diagrams. Tue, 10 Jul 2007 14:55:13 GMT vrinside [780] * trunk/vizservers/nanovis/ContourLineFilter.cpp (modified) * trunk/vizservers/nanovis/HeightMap.cpp (modified) * trunk/vizservers/nanovis/HeightMap.h (modified) * trunk/vizservers/nanovis/R2/src/R2Geometry.cpp (modified) * trunk/vizservers/nanovis/nanovis.cpp (modified) Add changing the color of linecontour Tue, 10 Jul 2007 01:38:11 GMT vrinside [779] * trunk/vizservers/nanovis/HeightMap.cpp (modified) * trunk/vizservers/nanovis/nanovis.cpp (modified) modified controlling visibility of linecontour of heightmap Tue, 10 Jul 2007 00:48:28 GMT vrinside [778] * trunk/vizservers/nanovis/nanovis.cpp (modified) modified axis and grid visible command Tue, 10 Jul 2007 00:14:09 GMT vrinside [777] * trunk/vizservers/nanovis/NvZincBlendeReconstructor.cpp (modified) modified creation of zincblende volume Mon, 09 Jul 2007 23:55:19 GMT vrinside [776] * trunk/vizservers/nanovis/ContourLineFilter.cpp (added) * trunk/vizservers/nanovis/ContourLineFilter.h (added) * trunk/vizservers/nanovis/Grid.cpp (added) * trunk/vizservers/nanovis/Grid.h (added) * trunk/vizservers/nanovis/HeightMap.cpp (added) * trunk/vizservers/nanovis/HeightMap.h (added) * trunk/vizservers/nanovis/Makefile.in (modified) * trunk/vizservers/nanovis/Nv.cpp (modified) * trunk/vizservers/nanovis/NvShader.cpp (modified) * trunk/vizservers/nanovis/NvShader.h (modified) * trunk/vizservers/nanovis/R2/include/R2/graphics (added) * trunk/vizservers/nanovis/R2/include/R2/graphics/R2Geometry.h (added) * trunk/vizservers/nanovis/R2/include/R2/graphics/R2IndexBuffer.h (added) * trunk/vizservers/nanovis/R2/include/R2/graphics/R2VertexBuffer.h (added) * trunk/vizservers/nanovis/R2/src/R2Geometry.cpp (added) * trunk/vizservers/nanovis/R2/src/R2IndexBuffer.cpp (added) * trunk/vizservers/nanovis/R2/src/R2VertexBuffer.cpp (added) * trunk/vizservers/nanovis/TransferFunction.h (modified) * trunk/vizservers/nanovis/TypeDefs.h (added) * trunk/vizservers/nanovis/Volume.cpp (modified) * trunk/vizservers/nanovis/Volume.h (modified) * trunk/vizservers/nanovis/ZincBlendeVolume.cpp (modified) * trunk/vizservers/nanovis/ZincBlendeVolume.h (modified) * trunk/vizservers/nanovis/nanovis.cpp (modified) * trunk/vizservers/nanovis/shaders/heightcolor.cg (added) * trunk/vizservers/nanovis/shaders/one_volume.cg (modified) Add 3D surface plot and grid rendering Mon, 09 Jul 2007 19:41:26 GMT dkearney [775] * trunk/gui/scripts/tool.tcl (modified) removed the hard coded path to submit per steve's request. now, on ... Mon, 09 Jul 2007 15:54:12 GMT mmc [774] * trunk/gui/scripts/textresult.tcl (modified) Downloading of binary data within objects was broken because ... Fri, 15 Jun 2007 02:27:40 GMT mmc [773] * trunk/gui/scripts/htmlviewer.tcl (modified) Fixed the default font size used in the HTML viewer for objects. Fri, 15 Jun 2007 01:55:08 GMT mmc [772] * trunk/gui/scripts/images/ballnstick.gif (modified) * trunk/gui/scripts/images/lines.gif (modified) * trunk/gui/scripts/images/rocker.xbm (added) * trunk/gui/scripts/images/spheres.gif (modified) * trunk/gui/scripts/molvisviewer.tcl (modified) Fixed up the rendering controls for the MolvisViewer. Thu, 14 Jun 2007 21:27:40 GMT dkearney [771] * trunk/gui/apps/rappture.env.in (modified) adding the : back to the OCTAVE_PATH environment variable because it ... Wed, 13 Jun 2007 16:15:38 GMT nkissebe [770] * trunk/gui/scripts/deviceEditor.tcl (modified) * trunk/gui/scripts/molvisviewer.tcl (modified) rename resource variable to look for to molvis_server instead of ... Mon, 11 Jun 2007 06:09:09 GMT dkearney [769] * trunk/src/core/RpLibrary.cc (modified) updated result function for all language bindings to automatically ... Mon, 11 Jun 2007 00:56:34 GMT mmc [768] * trunk/gui/scripts/analyzer.tcl (modified) * trunk/gui/scripts/numberresult.tcl (modified) * trunk/gui/scripts/xyresult.tcl (modified) Added manual-resim directive. This allows you to ... Sun, 10 Jun 2007 23:21:42 GMT mmc [767] * trunk/gui/scripts/contourresult.tcl (modified) * trunk/gui/scripts/deviceViewer1D.tcl (modified) * trunk/gui/scripts/deviceresult.tcl (modified) * trunk/gui/scripts/imageresult.tcl (modified) * trunk/gui/scripts/meshresult.tcl (modified) * trunk/gui/scripts/moleculeViewer.tcl (modified) * trunk/gui/scripts/molvisviewer.tcl (modified) * trunk/gui/scripts/nanovisviewer.tcl (modified) * trunk/gui/scripts/sequenceresult.tcl (modified) * trunk/gui/scripts/textresult.tcl (modified) * trunk/gui/scripts/valueresult.tcl (modified) * trunk/gui/scripts/xyresult.tcl (modified) Oops! Forgot to add the new -param option emitted by the ResultSet, ... Sun, 10 Jun 2007 23:06:35 GMT mmc [766] * trunk/examples/zoo/number/number.tcl (modified) * trunk/gui/scripts/contourresult.tcl (modified) * trunk/gui/scripts/deviceEditor.tcl (modified) * trunk/gui/scripts/deviceViewer1D.tcl (modified) * trunk/gui/scripts/deviceresult.tcl (modified) * trunk/gui/scripts/energyLevels.tcl (modified) * trunk/gui/scripts/field3dresult.tcl (modified) * trunk/gui/scripts/imageresult.tcl (modified) * trunk/gui/scripts/meshresult.tcl (modified) * trunk/gui/scripts/moleculeViewer.tcl (modified) * trunk/gui/scripts/molvisviewer.tcl (modified) * trunk/gui/scripts/nanovisviewer.tcl (modified) * trunk/gui/scripts/numberresult.tcl (added) * trunk/gui/scripts/resultset.tcl (modified) * trunk/gui/scripts/resultviewer.tcl (modified) * trunk/gui/scripts/sequenceresult.tcl (modified) * trunk/gui/scripts/textresult.tcl (modified) * trunk/gui/scripts/valueresult.tcl (modified) * trunk/gui/scripts/xyresult.tcl (modified) * trunk/tcl/scripts/result.tcl (modified) Fixed the output viewer for numbers/integers to show a plot of the ... Sat, 09 Jun 2007 22:01:25 GMT dkearney [765] * trunk/tcl/scripts/exec.tcl (modified) added SIGTERM as the kill signal for rappture exec at steve's request Sat, 09 Jun 2007 21:12:34 GMT mmc [764] * trunk/gui/scripts/resultset.tcl (modified) Fix for support ticket #1607 (can't set _cntlInfo(...)) This ticket ... Sat, 09 Jun 2007 19:09:16 GMT mmc [763] * trunk/tcl/scripts/library.tcl (modified) Fix for support ticket #2273 (can't read "val": no such variable). Sat, 09 Jun 2007 01:04:01 GMT dkearney [762] * trunk/src/Makefile.in (modified) * trunk/src2/core/Makefile.in (modified) removed rpath from linking to make sure /apps is not mounted on ... Sat, 09 Jun 2007 00:16:22 GMT mmc [761] * trunk/gui/scripts/controlOwner.tcl (modified) * trunk/gui/scripts/controls.tcl (modified) * trunk/gui/scripts/energyLevels.tcl (modified) * trunk/gui/scripts/htmlviewer.tcl (added) * trunk/gui/scripts/note.tcl (added) * trunk/gui/scripts/valueresult.tcl (modified) Added a new object which can be used to add annotations to ... Fri, 08 Jun 2007 22:46:18 GMT dkearney [760] * trunk/vizservers/configure.in (modified) * trunk/vizservers/pymolproxy/Makefile.in (modified) * trunk/vizservers/pymolproxy/pymol (added) * trunk/vizservers/start_viz.sh.in (modified) added pymol script for launching pymol. updated pymolproxy's ... Fri, 08 Jun 2007 20:48:39 GMT dkearney [759] * trunk/src/core/RpLibrary.cc (modified) * trunk/src/core/RpLibrary.h (modified) fixes for the copy function within the core rappture library. this ... Sun, 03 Jun 2007 03:15:26 GMT dkearney [758] * trunk/src/core/RpLibrary.cc (modified) * trunk/src/core/RpLibrary.h (modified) added safety check to result() fxn to report failure to write run.xml ... Thu, 31 May 2007 21:45:54 GMT dkearney [757] * trunk/vizservers/start_viz.sh.in (modified) simplified start_vis to just copy the whole install_dir tree to /tmp ... Thu, 31 May 2007 19:46:34 GMT dkearney [756] * trunk/vizservers/start_viz.sh.in (modified) adding -r flag to cp so it does a recursive copy Thu, 31 May 2007 18:22:53 GMT dkearney [755] * trunk/vizservers/nanovis/Lic.cpp (modified) * trunk/vizservers/nanovis/Nv.cpp (modified) * trunk/vizservers/nanovis/Nv.h (modified) * trunk/vizservers/nanovis/NvColorTableShader.cpp (modified) * trunk/vizservers/nanovis/NvLIC.cpp (modified) * trunk/vizservers/nanovis/NvParticleAdvectionShader.cpp (modified) * trunk/vizservers/nanovis/NvParticleRenderer.cpp (modified) * trunk/vizservers/nanovis/NvRegularVolumeShader.cpp (modified) * trunk/vizservers/nanovis/ParticleSystem.cpp (modified) * trunk/vizservers/nanovis/PlaneRenderer.cpp (modified) * trunk/vizservers/nanovis/nanovis.cpp (modified) * trunk/vizservers/start_viz.sh.in (modified) added -p option to nanovis so we can add paths in a colon separated ... Wed, 30 May 2007 19:10:06 GMT dkearney [754] * trunk/vizservers/start_viz.sh.in (modified) moved binary programs to the bin directory in start_viz.sh script Wed, 30 May 2007 08:23:18 GMT dkearney [753] * trunk/vizservers/start_viz.sh.in (modified) updated start server script for nanovis/nanoscale changing the port ... Wed, 30 May 2007 07:19:11 GMT dkearney [752] * trunk/gui/scripts/field.tcl (modified) * trunk/src2/core/RpEncode.cc (modified) * trunk/tcl/scripts/library.tcl (modified) * trunk/vizservers/nanovis/nanovis.cpp (modified) added use of RPENC_HDR flag in decode function so users can give the ... Tue, 29 May 2007 04:10:04 GMT dkearney [751] * trunk/gui/configure (modified) * trunk/gui/configure.in (modified) * trunk/src/Makefile.in (modified) * trunk/src2/core/Makefile.in (modified) * trunk/src2/core/RpEncode.cc (moved) * trunk/src2/core/RpEncode.h (moved) * trunk/vizservers/configure (modified) * trunk/vizservers/configure.in (modified) moved encode code to src2/core so it can be used in librappture2 for ... Mon, 28 May 2007 19:24:28 GMT dkearney [750] * trunk/vizservers/Makefile.in (modified) * trunk/vizservers/nanoscale/Makefile (deleted) * trunk/vizservers/nanoscale/Makefile.in (modified) * trunk/vizservers/nanovis/Makefile (deleted) * trunk/vizservers/nanovis/Makefile.in (modified) * trunk/vizservers/nanovis/start_server (deleted) * trunk/vizservers/pymolproxy/Makefile (deleted) * trunk/vizservers/pymolproxy/Makefile.in (modified) * trunk/vizservers/start_viz.sh (deleted) added distclean targets Mon, 28 May 2007 18:45:31 GMT dkearney [749] * trunk/vizservers (moved) * trunk/vizservers/Makefile.in (added) * trunk/vizservers/configure (added) * trunk/vizservers/configure.in (added) * trunk/vizservers/nanoscale (copied) * trunk/vizservers/nanoscale/Makefile (modified) * trunk/vizservers/nanoscale/Makefile.in (added) * trunk/vizservers/nanovis (copied) * trunk/vizservers/nanovis/Makefile (modified) * trunk/vizservers/nanovis/Makefile.in (added) * trunk/vizservers/nanovis/start_server (modified) * trunk/vizservers/pymolproxy (copied) * trunk/vizservers/pymolproxy/Makefile (modified) * trunk/vizservers/pymolproxy/Makefile.in (added) * trunk/vizservers/start_viz.sh (copied) * trunk/vizservers/start_viz.sh.in (added) moved vizservers directory to top level. added configure/makefiles to ... Wed, 23 May 2007 23:16:47 GMT dkearney [748] * trunk/src/Makefile.in (modified) fixed librappture.a to properly include object files from src2/core Wed, 23 May 2007 20:41:01 GMT dkearney [747] * trunk/src/core/RpUnits.cc (modified) added decibel to list of recognized units. Fri, 18 May 2007 22:28:20 GMT mmc [746] * trunk/gui/scripts/combobox.tcl (modified) * trunk/gui/scripts/loader.tcl (modified) * trunk/gui/scripts/spinint.tcl (modified) Fix for support ticket #1773 "bad window path name ".main.area..." ... Fri, 18 May 2007 18:55:33 GMT mmc [745] * trunk/gui/scripts/analyzer.tcl (modified) Fix for a problem loading structures that showed up in the MOSFET ... Fri, 18 May 2007 14:03:10 GMT dkearney [744] * trunk/gui/apps/rappture.env.in (modified) added lib/vtk to lib search path so rappture can find vtk libraries, ... Thu, 17 May 2007 20:57:06 GMT mmc [743] * trunk/gui/scripts/bugreport.tcl (modified) * trunk/test/jobs (added) * trunk/test/jobs/coredumps (added) * trunk/test/jobs/coredumps/coredump.tcl (added) * trunk/test/jobs/coredumps/genoutput.tcl (added) * trunk/test/jobs/coredumps/tool.xml (added) Added a test so we can simulate jobs that dump core mid-way through. ... Thu, 17 May 2007 15:12:25 GMT mmc [742] * trunk/gui/scripts/deviceViewer1D.tcl (modified) Fix for problem viewing structures in app-mgnanowirefet. The icon on ... Thu, 17 May 2007 03:33:19 GMT nkissebe [741] * trunk/t.txt (deleted) completeing repository check after conversion to fsfs Thu, 17 May 2007 03:32:49 GMT nkissebe [740] * trunk/t.txt (added) testing repository after conversion to fsfs Thu, 17 May 2007 02:52:40 GMT mmc [739] * trunk/gui/scripts/contourresult.tcl (modified) Fix for support ticket #1686 'can't read "_limits(vmin)": no such ... Thu, 17 May 2007 02:37:45 GMT mmc [738] * trunk/gui/scripts/deviceViewer1D.tcl (modified) * trunk/gui/scripts/energyLevels.tcl (modified) * trunk/gui/scripts/field.tcl (modified) * trunk/gui/scripts/gauge.tcl (modified) * trunk/gui/scripts/xyresult.tcl (modified) Fixed a problem recently introduced with device structures on the ... Wed, 16 May 2007 20:27:15 GMT dkearney [737] * trunk/src/matlab/RpMatlabInterface.cc (modified) * trunk/src/matlab/RpMatlabInterface.h (modified) * trunk/src/matlab/rpUtilsProgress.cc (modified) added the rpmxFlush function to flush matlab's buffers on demand. ... Tue, 15 May 2007 06:44:47 GMT dkearney [736] * trunk/gui/scripts/curve.tcl (modified) * trunk/gui/scripts/resultviewer.tcl (modified) * trunk/gui/scripts/xyresult.tcl (modified) adding capabilities for xy scatter plots by adding curve.about.type = ... Sun, 13 May 2007 02:18:44 GMT mmc [735] * trunk/gui/scripts/tool.tcl (modified) Oops! The "submit" command isn't on the user's path right now. ... Sun, 13 May 2007 02:12:48 GMT mmc [734] * trunk/gui/scripts/tool.tcl (modified) Fixed the handling for "job_protocol=submit" so that it doesn't print ... Sun, 13 May 2007 00:53:51 GMT mmc [733] * trunk/gui/scripts/analyzer.tcl (modified) * trunk/gui/scripts/bugreport.tcl (modified) Fixed long messages (usually resulting from "Problem launching job") ... Sat, 12 May 2007 22:39:48 GMT mmc [732] * trunk/gui/scripts/field.tcl (modified) Oops! Goofed up the "string is double" test when adding -strict. Sat, 12 May 2007 22:33:40 GMT mmc [731] * trunk/gui/scripts/tool.tcl (modified) Fixed tool execution to honor the new "job_protocol" directive. If ... Sat, 12 May 2007 22:07:26 GMT mmc [730] * trunk/gui/scripts/field.tcl (modified) * trunk/gui/scripts/gauge.tcl (modified) * trunk/gui/scripts/moleculeViewer.tcl (modified) Fix for support ticket #1434 "reset zoom button does not work on ... Sat, 12 May 2007 21:14:49 GMT mmc [729] * trunk/examples/zoo/structure/structure.tcl (modified) * trunk/gui/scripts/deviceViewer1D.tcl (modified) * trunk/gui/scripts/field.tcl (modified) Fix for support ticket #1455, "floating-point value too large to ... Fri, 11 May 2007 20:06:36 GMT mmc [728] * trunk/gui/apps/driver (modified) * trunk/gui/scripts/analyzer.tcl (modified) * trunk/gui/scripts/bugreport.tcl (modified) Fixed the automatic bug reporting system to avoid reporting bugs ... Fri, 11 May 2007 18:31:34 GMT mmc [727] * trunk/gui/scripts/bugreport.tcl (modified) Final tweaks to improve the messages for automatic ticket submission ... Fri, 11 May 2007 17:28:42 GMT mmc [726] * trunk/gui/scripts/tool.tcl (modified) Added a fix so that tools running without a $SESSIONDIR/resources ... Fri, 11 May 2007 03:00:44 GMT mmc [725] * trunk/src/core/RpEncode.cc (modified) * trunk/src/tcl/src/RpEncodeTclInterface.cc (modified) * trunk/src/tcl/tests/encode.test (modified) Fixed the Rappture::encoding::is function to properly detect embedded ... Fri, 11 May 2007 02:53:32 GMT mmc [724] * trunk/gui/Makefile.in (modified) * trunk/gui/configure (modified) * trunk/gui/configure.in (modified) * trunk/gui/scripts/analyzer.tcl (modified) * trunk/gui/scripts/animicon.tcl (added) * trunk/gui/scripts/bugreport.tcl (modified) * trunk/gui/scripts/images/circle-ball1.gif (added) * trunk/gui/scripts/images/circle-ball2.gif (added) * trunk/gui/scripts/images/circle-ball3.gif (added) * trunk/gui/scripts/images/circle-ball4.gif (added) * trunk/gui/scripts/images/circle-ball5.gif (added) * trunk/gui/scripts/images/circle-ball6.gif (added) * trunk/gui/scripts/images/circle-ball7.gif (added) * trunk/gui/scripts/images/circle-ball8.gif (added) * trunk/gui/scripts/loader.tcl (modified) * trunk/gui/scripts/textentry.tcl (modified) * trunk/gui/scripts/tool.tcl (modified) Fixed the bugreport component to automatically register all "Oops!" ... Thu, 10 May 2007 21:39:45 GMT nkissebe [723] * trunk/gui/vizservers/pymolproxy/Makefile (modified) fix install dir for pymolproxy Thu, 10 May 2007 21:32:13 GMT nkissebe [722] * trunk/gui/vizservers/nanoscale/server.c (modified) leave read end of request pipe open when launching client to prevent ... Thu, 10 May 2007 21:29:26 GMT nkissebe [721] * trunk/gui/vizservers/pymolproxy/pymolproxy.c (modified) ignore SIGPIPE signal (ie, if nanoscale terminated) Thu, 10 May 2007 21:28:20 GMT nkissebe [720] * trunk/gui/vizservers/nanovis/nanovis.cpp (modified) ignore SIGPIPE signals (which would occur if nanoscale terminated) Wed, 09 May 2007 23:48:53 GMT dkearney [719] * trunk/Makefile.in (modified) * trunk/configure (modified) * trunk/configure.in (modified) * trunk/include (added) adding include directory and adjusting build system's matlab arch ... Wed, 09 May 2007 20:48:39 GMT dkearney [718] * trunk/Makefile.in (modified) * trunk/configure (modified) * trunk/configure.in (modified) * trunk/perl/Makefile.PL.in (modified) * trunk/python/setup.py.in (modified) * trunk/src/Makefile.in (modified) * trunk/src/matlab/Makefile.in (modified) * trunk/src/matlab/RpMatlabInterface.h (modified) * trunk/src/octave/Makefile.in (modified) * trunk/src/octave/RpOctaveInterface.h (modified) * trunk/src/tcl/configure (modified) * trunk/src/tcl/configure.in (modified) * trunk/src2/core/Makefile.in (modified) after the core rappture library (librappture.so) is created the ... Wed, 09 May 2007 15:58:58 GMT nkissebe [717] * trunk/gui/vizservers/nanoscale/Makefile (modified) build binary as "nanoscale" rather than "server". changed install dir ... Wed, 09 May 2007 15:58:18 GMT nkissebe [716] * trunk/gui/vizservers/nanoscale/server.c (modified) daemonize by default, use -f (debug flag) to run in the foreground Tue, 08 May 2007 20:55:00 GMT nkissebe [715] * trunk/gui/vizservers/nanoscale/server.c (modified) multi-service and detachment support added to nanoscale Tue, 08 May 2007 19:33:48 GMT nkissebe [714] * trunk/gui/vizservers/pymolproxy/pymolproxy.c (modified) had stdin/stdout parameters reversed give a little more information ... Tue, 08 May 2007 15:34:09 GMT nkissebe [713] * trunk/gui/scripts/nanovisviewer.tcl (modified) nanovisviewer should send memory reservation in big endian (network ... Mon, 07 May 2007 22:28:39 GMT dkearney [712] * trunk/gui/apps/simsim.in (modified) changed simsim to reference the tcl version instead of the old python ... Mon, 07 May 2007 22:18:15 GMT mmc [711] * trunk/examples/graph/graph.py (modified) * trunk/examples/zoo/loader/tool.xml (modified) * trunk/gui/scripts/mainwin.tcl (modified) * trunk/gui/scripts/moleculeViewer.tcl (modified) Fixed the older MoleculeViewer to work properly with the add/delete ... Mon, 07 May 2007 19:41:07 GMT dkearney [710] * trunk/Makefile.in (modified) fixed exmaples typo to examples in rappture makefile Mon, 07 May 2007 19:18:04 GMT dkearney [709] * trunk/src/core/RpUnits.cc (modified) * trunk/src/core/RpUnits.h (modified) added newton, amu as units. clarified system names for hz, bq, mol Mon, 07 May 2007 18:07:32 GMT dkearney [708] * trunk/Makefile.in (modified) * trunk/configure (modified) * trunk/configure.in (modified) * trunk/gui/apps/rappture.env.in (modified) * trunk/gui/configure.in (modified) * trunk/perl/Makefile.PL.in (modified) * trunk/python/setup.py.in (modified) * trunk/src/Makefile.in (modified) * trunk/src/matlab/Makefile.in (modified) * trunk/src/octave/Makefile.in (modified) * trunk/src/tcl/Makefile.in (modified) * trunk/src/tcl/configure (modified) * trunk/src/tcl/configure.in (modified) * trunk/src2/core/Makefile.in (modified) updateing build system for rappture and language bindings. ... Mon, 07 May 2007 03:13:02 GMT nkissebe [707] * trunk/gui/vizservers/pymolproxy/pymolproxy.c (modified) disable last of the debugging output Sun, 06 May 2007 01:52:47 GMT nkissebe [706] * trunk/gui/scripts/molvisviewer.tcl (modified) clear image cache immediately when window resizes and defer updates ... Sat, 05 May 2007 22:15:21 GMT nkissebe [705] * trunk/gui/scripts/molvisviewer.tcl (modified) send memory request in big endian format (network byte order) Sat, 05 May 2007 19:19:43 GMT nkissebe [704] * trunk/gui/scripts/molvisviewer.tcl (modified) move reconnection code to from _send to _rebuild reorganized ... Sat, 05 May 2007 01:17:35 GMT mmc [703] * trunk/gui/vizservers/pymol (deleted) Moved standard PyMol distribution over to rappture-runtime project. Sat, 05 May 2007 00:22:57 GMT mmc [702] * trunk/examples/zoo/binary/tardir.tcl (modified) * trunk/gui/configure (modified) * trunk/gui/configure.in (modified) * trunk/gui/scripts/textentry.tcl (modified) * trunk/gui/scripts/textresult.tcl (modified) * trunk/gui/scripts/utils.tcl (added) * trunk/gui/src/RpDaemon.c (added) * trunk/gui/src/RpInit.c (modified) * trunk/src2/core/Makefile (modified) * trunk/tcl/scripts/library.tcl (modified) - Added Rappture::daemon function so that any process can be forked ... Fri, 04 May 2007 20:52:36 GMT nkissebe [701] * trunk/gui/scripts/molvisviewer.tcl (modified) typo fix (-nonewline, not --nonewline) Fri, 04 May 2007 20:50:53 GMT nkissebe [700] * trunk/gui/vizservers/pymol/layer0/MyPNG.c (modified) * trunk/gui/vizservers/pymol/layer0/PyMOLGlobals.h (modified) * trunk/gui/vizservers/pymol/layer0/os_gl.c (modified) * trunk/gui/vizservers/pymol/layer1/Ortho.c (modified) * trunk/gui/vizservers/pymol/layer1/P.c (modified) * trunk/gui/vizservers/pymol/layer1/Scene.c (modified) * trunk/gui/vizservers/pymol/layer4/Cmd.c (modified) * trunk/gui/vizservers/pymol/layer5/PyMOL.c (modified) * trunk/gui/vizservers/pymol/layer5/main.c (modified) * trunk/gui/vizservers/pymol/modules/pymol/api.py (modified) * trunk/gui/vizservers/pymol/modules/pymol/cmd.py (modified) * trunk/gui/vizservers/pymol/modules/pymol/controlling.py (modified) * trunk/gui/vizservers/pymol/modules/pymol/exporting.py (modified) * trunk/gui/vizservers/pymol/modules/pymol/keywords.py (modified) initial modifications to pyMol for remote visualization server support Fri, 04 May 2007 20:36:33 GMT nkissebe [699] * trunk/gui/vizservers/pymol (added) * trunk/gui/vizservers/pymol/AUTHORS (added) * trunk/gui/vizservers/pymol/COPYING (added) * trunk/gui/vizservers/pymol/ChangeLog (added) * trunk/gui/vizservers/pymol/DEVELOPERS (added) * trunk/gui/vizservers/pymol/INSTALL (added) * trunk/gui/vizservers/pymol/LICENSE (added) * trunk/gui/vizservers/pymol/Makefile.am (added) * trunk/gui/vizservers/pymol/Makefile.delsci (added) * trunk/gui/vizservers/pymol/Makefile.in (added) * trunk/gui/vizservers/pymol/NEWS (added) * trunk/gui/vizservers/pymol/PACKAGING (added) * trunk/gui/vizservers/pymol/README (added) * trunk/gui/vizservers/pymol/aclocal.m4 (added) * trunk/gui/vizservers/pymol/acsite.m4 (added) * trunk/gui/vizservers/pymol/autogen.sh (added) * trunk/gui/vizservers/pymol/config.guess (added) * trunk/gui/vizservers/pymol/config.h.in (added) * trunk/gui/vizservers/pymol/config.sub (added) * trunk/gui/vizservers/pymol/configure (added) * trunk/gui/vizservers/pymol/configure.ac (added) * trunk/gui/vizservers/pymol/contrib (added) * trunk/gui/vizservers/pymol/contrib/Makefile.delsci (added) * trunk/gui/vizservers/pymol/contrib/README (added) * trunk/gui/vizservers/pymol/contrib/champ (added) * trunk/gui/vizservers/pymol/contrib/champ/LICENSE (added) * trunk/gui/vizservers/pymol/contrib/champ/Makefile.am (added) * trunk/gui/vizservers/pymol/contrib/champ/Makefile.delsci (added) * trunk/gui/vizservers/pymol/contrib/champ/Makefile.in (added) * trunk/gui/vizservers/pymol/contrib/champ/README (added) * trunk/gui/vizservers/pymol/contrib/champ/champ.c (added) * trunk/gui/vizservers/pymol/contrib/champ/champ.h (added) * trunk/gui/vizservers/pymol/contrib/champ/champ_module.c (added) * trunk/gui/vizservers/pymol/contrib/champ/chiral.c (added) * trunk/gui/vizservers/pymol/contrib/champ/chiral.h (added) * trunk/gui/vizservers/pymol/contrib/champ/const.h (added) * trunk/gui/vizservers/pymol/contrib/champ/err2.c (added) * trunk/gui/vizservers/pymol/contrib/champ/err2.h (added) * trunk/gui/vizservers/pymol/contrib/champ/feedback2.c (added) * trunk/gui/vizservers/pymol/contrib/champ/feedback2.h (added) * trunk/gui/vizservers/pymol/contrib/champ/list.c (added) * trunk/gui/vizservers/pymol/contrib/champ/list.h (added) * trunk/gui/vizservers/pymol/contrib/champ/mac.h (added) * trunk/gui/vizservers/pymol/contrib/champ/os_memory.c (added) * trunk/gui/vizservers/pymol/contrib/champ/os_memory.h (added) * trunk/gui/vizservers/pymol/contrib/champ/os_python.h (added) * trunk/gui/vizservers/pymol/contrib/champ/os_std.h (added) * trunk/gui/vizservers/pymol/contrib/champ/sort.c (added) * trunk/gui/vizservers/pymol/contrib/champ/sort.h (added) * trunk/gui/vizservers/pymol/contrib/champ/strblock.c (added) * trunk/gui/vizservers/pymol/contrib/champ/strblock.h (added) * trunk/gui/vizservers/pymol/contrib/champ/test (added) * trunk/gui/vizservers/pymol/contrib/champ/test/01basic.py (added) * trunk/gui/vizservers/pymol/contrib/champ/test/10stereo.py (added) * trunk/gui/vizservers/pymol/contrib/champ/test/11stereo.py (added) * trunk/gui/vizservers/pymol/contrib/champ/test/20export_naming.py (added) * trunk/gui/vizservers/pymol/contrib/champ/test/21export_formal_charges.py (added) * trunk/gui/vizservers/pymol/contrib/champ/test/22export_partial_charges.py (added) * trunk/gui/vizservers/pymol/contrib/champ/test/50nci.py (added) * trunk/gui/vizservers/pymol/contrib/champ/vla.c (added) * trunk/gui/vizservers/pymol/contrib/champ/vla.h (added) * trunk/gui/vizservers/pymol/contrib/modules (added) * trunk/gui/vizservers/pymol/contrib/modules/ExtensionClass.LICENSE (added) * trunk/gui/vizservers/pymol/contrib/modules/ExtensionClass.c (added) * trunk/gui/vizservers/pymol/contrib/modules/ExtensionClass.c-py152 (added) * trunk/gui/vizservers/pymol/contrib/modules/ExtensionClass.h (added) * trunk/gui/vizservers/pymol/contrib/modules/ExtensionClass.h-py152 (added) * trunk/gui/vizservers/pymol/contrib/modules/ExtensionClass.stx (added) * trunk/gui/vizservers/pymol/contrib/modules/Makefile.am (added) * trunk/gui/vizservers/pymol/contrib/modules/Makefile.in (added) * trunk/gui/vizservers/pymol/contrib/modules/Makefile.pre.in.src (added) * trunk/gui/vizservers/pymol/contrib/modules/Makefile.static (added) * trunk/gui/vizservers/pymol/contrib/modules/Setup.in (added) * trunk/gui/vizservers/pymol/contrib/modules/extensionclass.def (added) * trunk/gui/vizservers/pymol/contrib/modules/notes (added) * trunk/gui/vizservers/pymol/contrib/pyopengl (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/Makefile.am (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/Makefile.delsci (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/Makefile.in (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/_glu_nummodule.c (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/_glu_nummodule.def (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/_glumodule.c (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/_glumodule.def (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/_glutmodule.c (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/_glutmodule.def (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/_opengl_nummodule.c (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/_opengl_nummodule.def (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/_openglmodule.c (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/_openglmodule.def (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/openglutil.c (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/openglutil.h (added) * trunk/gui/vizservers/pymol/contrib/pyopengl/openglutil_num.c (added) * trunk/gui/vizservers/pymol/contrib/sglite (added) * trunk/gui/vizservers/pymol/contrib/sglite/LICENSE (added) * trunk/gui/vizservers/pymol/contrib/sglite/Makefile.am (added) * trunk/gui/vizservers/pymol/contrib/sglite/Makefile.delsci (added) * trunk/gui/vizservers/pymol/contrib/sglite/Makefile.in (added) * trunk/gui/vizservers/pymol/contrib/sglite/runtests.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgcb.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgcharmx.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgconst.h (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgfile.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sggen.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgglobal.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sghall.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sghkl.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sglite.h (added) * trunk/gui/vizservers/pymol/contrib/sglite/sglitemodule.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sglitemodule.def (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgltr.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgmath.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgmetric.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgnorm.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgprop.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgrefset.h (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgss.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgstr.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgsymbols.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgtidy.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgtype.c (added) * trunk/gui/vizservers/pymol/contrib/sglite/sgutil.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc (added) * trunk/gui/vizservers/pymol/contrib/uiuc/README (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/LICENSE (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/include (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/include/import_graphics_plugin.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/include/molfile_plugin.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/include/vmdplugin.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/LICENSE (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/.files (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/.includes (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/Makefile.am (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/Makefile.delsci (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/Makefile.in (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadMDLMol.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/cpmdplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/fastio.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/fortread.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/hash.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/hash.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/largefiles.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/objects.make (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/vmddir.h (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c (added) * trunk/gui/vizservers/pymol/contrib/uiuc/plugins/molfile_plugin/update.py (added) * trunk/gui/vizservers/pymol/data (added) * trunk/gui/vizservers/pymol/data/chempy (added) * trunk/gui/vizservers/pymol/data/chempy/fragments (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ace.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/acetylene.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ala.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/arg.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/argn.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/asn.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/asp.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/asph.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/benzene.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/butane.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_ala.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_arg.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_argn.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_asn.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_asp.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_asph.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_cys.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_gln.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_glu.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_gluh.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_gly.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_hid.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_hie.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_hip.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_his.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_ile.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_leu.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_lys.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_lysn.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_met.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_phe.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_pro.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_ser.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_thr.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_trp.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_tyr.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ct_val.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/cyclobutane.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/cycloheptane.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/cyclohexane.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/cyclopentadiene.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/cyclopentane.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/cys.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ethylene.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/formaldehyde.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/formamide.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/gln.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/glu.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/gluh.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/gly.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/hid.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/hie.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/hip.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/his.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ile.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/leu.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/lys.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/lysn.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/met.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/methane.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nhh.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nme.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_ala.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_arg.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_argn.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_asn.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_asp.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_asph.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_cys.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_gln.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_glu.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_gluh.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_gly.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_hid.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_hie.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_hip.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_his.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_ile.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_leu.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_lys.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_lysn.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_met.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_phe.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_pro.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_ser.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_thr.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_trp.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_tyr.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/nt_val.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/peptide.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/phe.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/pro.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/realtime.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/ser.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/sulfone.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/thr.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/trp.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/tyr.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/fragments/val.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/sidechains (added) * trunk/gui/vizservers/pymol/data/chempy/sidechains/generate1.py (added) * trunk/gui/vizservers/pymol/data/chempy/sidechains/generate2.py (added) * trunk/gui/vizservers/pymol/data/chempy/sidechains/sc_bb_dep.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/sidechains/sc_bb_dep.py (added) * trunk/gui/vizservers/pymol/data/chempy/sidechains/sc_bb_ind.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/sidechains/sc_bb_ind.py (added) * trunk/gui/vizservers/pymol/data/chempy/sidechains/sc_library.pkl (added) * trunk/gui/vizservers/pymol/data/chempy/tinker (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/Makefile.delsci (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/chempy.prm (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/make99_simple.py (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/make_simple.py (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/parm94.dat (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/parm94_rsm.dat (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/parm96.dat (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/parm96_rsm.dat (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/parm99.dat (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/parm99_simple.dat (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/parm99_wld.dat (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/parm_simple.dat (added) * trunk/gui/vizservers/pymol/data/chempy/tinker/parm_simple.inp (added) * trunk/gui/vizservers/pymol/data/chempy/water.pdb (added) * trunk/gui/vizservers/pymol/data/demo (added) * trunk/gui/vizservers/pymol/data/demo/1hpv.r3d (added) * trunk/gui/vizservers/pymol/data/demo/1tii.pdb (added) * trunk/gui/vizservers/pymol/data/demo/cgo03.py (added) * trunk/gui/vizservers/pymol/data/demo/il2.pdb (added) * trunk/gui/vizservers/pymol/data/demo/pept.pdb (added) * trunk/gui/vizservers/pymol/data/demo/pept.pkl (added) * trunk/gui/vizservers/pymol/data/pmg_tk (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/aro5.gif (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/aro5.xbm (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/aro6.gif (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/aro6.xbm (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/cyc4.gif (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/cyc4.xbm (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/cyc5.gif (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/cyc5.xbm (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/cyc6.gif (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/cyc6.xbm (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/cyc7.gif (added) * trunk/gui/vizservers/pymol/data/pmg_tk/bitmaps/builder/cyc7.xbm (added) * trunk/gui/vizservers/pymol/data/pymol (added) * trunk/gui/vizservers/pymol/data/pymol/cmyk.png (added) * trunk/gui/vizservers/pymol/data/pymol/matrices (added) * trunk/gui/vizservers/pymol/data/pymol/matrices/BLOSUM62 (added) * trunk/gui/vizservers/pymol/data/pymol/splash.png (added) * trunk/gui/vizservers/pymol/data/tut (added) * trunk/gui/vizservers/pymol/data/tut/1hpv.pdb (added) * trunk/gui/vizservers/pymol/depcomp (added) * trunk/gui/vizservers/pymol/examples (added) * trunk/gui/vizservers/pymol/examples/chempy (added) * trunk/gui/vizservers/pymol/examples/chempy/generate_amber.py (added) * trunk/gui/vizservers/pymol/examples/chempy/generate_mmff.py (added) * trunk/gui/vizservers/pymol/examples/cookbook (added) * trunk/gui/vizservers/pymol/examples/cookbook/README (added) * trunk/gui/vizservers/pymol/examples/cookbook/build_peptide.py (added) * trunk/gui/vizservers/pymol/examples/cookbook/contact.pml (added) * trunk/gui/vizservers/pymol/examples/cookbook/dali.py (added) * trunk/gui/vizservers/pymol/examples/cookbook/density.pml (added) * trunk/gui/vizservers/pymol/examples/cookbook/groel_es.pml (added) * trunk/gui/vizservers/pymol/examples/cookbook/packing.pml (added) * trunk/gui/vizservers/pymol/examples/cookbook/packsurf.pml (added) * trunk/gui/vizservers/pymol/examples/cookbook/ref_frame.pml (added) * trunk/gui/vizservers/pymol/examples/cookbook/ribosome.pml (added) * trunk/gui/vizservers/pymol/examples/cookbook/scenes2movie.pml (added) * trunk/gui/vizservers/pymol/examples/devel (added) * trunk/gui/vizservers/pymol/examples/devel/brick01.py (added) * trunk/gui/vizservers/pymol/examples/devel/cam2crd.pym (added) * trunk/gui/vizservers/pymol/examples/devel/cgo01.py (added) * trunk/gui/vizservers/pymol/examples/devel/cgo02.py (added) * trunk/gui/vizservers/pymol/examples/devel/cgo03.py (added) * trunk/gui/vizservers/pymol/examples/devel/cgo04.py (added) * trunk/gui/vizservers/pymol/examples/devel/cgo_3Dtext01.py (added) * trunk/gui/vizservers/pymol/examples/devel/cgo_label_hack.py (added) * trunk/gui/vizservers/pymol/examples/devel/cgo_plane.py (added) * trunk/gui/vizservers/pymol/examples/devel/chempy_model01.py (added) * trunk/gui/vizservers/pymol/examples/devel/chempy_model02.py (added) * trunk/gui/vizservers/pymol/examples/devel/chempy_model03.py (added) * trunk/gui/vizservers/pymol/examples/devel/gl01.py (added) * trunk/gui/vizservers/pymol/examples/devel/gl02.py (added) * trunk/gui/vizservers/pymol/examples/devel/gl03.py (added) * trunk/gui/vizservers/pymol/examples/devel/importing.py (added) * trunk/gui/vizservers/pymol/examples/devel/membrane.py (added) * trunk/gui/vizservers/pymol/examples/devel/mutate01.pml (added) * trunk/gui/vizservers/pymol/examples/devel/mutate02.py (added) * trunk/gui/vizservers/pymol/examples/devel/my_ext_gui.py (added) * trunk/gui/vizservers/pymol/examples/devel/pick_wiz.py (added) * trunk/gui/vizservers/pymol/examples/devel/povray01.py (added) * trunk/gui/vizservers/pymol/examples/devel/scenes_to_movie01.pml (added) * trunk/gui/vizservers/pymol/examples/devel/sd_annotate.pml (added) * trunk/gui/vizservers/pymol/examples/devel/sele_wiz.py (added) * trunk/gui/vizservers/pymol/examples/devel/start_pymol.py (added) * trunk/gui/vizservers/pymol/examples/devel/xmlrpc01.py (added) * trunk/gui/vizservers/pymol/examples/devel/xmlrpc02.py (added) * trunk/gui/vizservers/pymol/examples/launching (added) * trunk/gui/vizservers/pymol/examples/launching/README (added) * trunk/gui/vizservers/pymol/examples/launching/launch.py (added) * trunk/gui/vizservers/pymol/examples/launching/launch_demo.py (added) * trunk/gui/vizservers/pymol/examples/launching/launch_no_tk.py (added) * trunk/gui/vizservers/pymol/examples/launching/launch_viewer1.py (added) * trunk/gui/vizservers/pymol/examples/launching/launch_viewer2.py (added) * trunk/gui/vizservers/pymol/examples/package (added) * trunk/gui/vizservers/pymol/examples/package/redhat (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.93-1.rh62.py152.spec (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.93-1.rh70.py152.spec (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.93-1.rh72.py21.spec (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.93-1.rh73.py22.spec (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.93-1.rh80.py22.spec (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.93-1.rh90.py22.spec (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.96-1.rh62.py152.spec (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.96-1.rh70.py152.spec (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.96-1.rh72.py21.spec (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.96-1.rh73.py22.spec (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.96-1.rh80.py22.spec (added) * trunk/gui/vizservers/pymol/examples/package/redhat/pymol-0.96-1.rh90.py22.spec (added) * trunk/gui/vizservers/pymol/install-sh (added) * trunk/gui/vizservers/pymol/layer0 (added) * trunk/gui/vizservers/pymol/layer0/Base.h (added) * trunk/gui/vizservers/pymol/layer0/Block.c (added) * trunk/gui/vizservers/pymol/layer0/Block.h (added) * trunk/gui/vizservers/pymol/layer0/Crystal.c (added) * trunk/gui/vizservers/pymol/layer0/Crystal.h (added) * trunk/gui/vizservers/pymol/layer0/Debug.c (added) * trunk/gui/vizservers/pymol/layer0/Debug.h (added) * trunk/gui/vizservers/pymol/layer0/Deferred.c (added) * trunk/gui/vizservers/pymol/layer0/Deferred.h (added) * trunk/gui/vizservers/pymol/layer0/Err.c (added) * trunk/gui/vizservers/pymol/layer0/Err.h (added) * trunk/gui/vizservers/pymol/layer0/Feedback.c (added) * trunk/gui/vizservers/pymol/layer0/Feedback.h (added) * trunk/gui/vizservers/pymol/layer0/Field.c (added) * trunk/gui/vizservers/pymol/layer0/Field.h (added) * trunk/gui/vizservers/pymol/layer0/Isosurf.c (added) * trunk/gui/vizservers/pymol/layer0/Isosurf.h (added) * trunk/gui/vizservers/pymol/layer0/ListMacros.h (added) * trunk/gui/vizservers/pymol/layer0/Makefile.am (added) * trunk/gui/vizservers/pymol/layer0/Makefile.delsci (added) * trunk/gui/vizservers/pymol/layer0/Makefile.in (added) * trunk/gui/vizservers/pymol/layer0/Map.c (added) * trunk/gui/vizservers/pymol/layer0/Map.h (added) * trunk/gui/vizservers/pymol/layer0/Match.c (added) * trunk/gui/vizservers/pymol/layer0/Match.h (added) * trunk/gui/vizservers/pymol/layer0/Matrix.c (added) * trunk/gui/vizservers/pymol/layer0/Matrix.h (added) * trunk/gui/vizservers/pymol/layer0/MemoryCache.c (added) * trunk/gui/vizservers/pymol/layer0/MemoryCache.h (added) * trunk/gui/vizservers/pymol/layer0/MemoryDebug.c (added) * trunk/gui/vizservers/pymol/layer0/MemoryDebug.h (added) * trunk/gui/vizservers/pymol/layer0/MyPNG.c (added) * trunk/gui/vizservers/pymol/layer0/MyPNG.h (added) * trunk/gui/vizservers/pymol/layer0/OOMac.h (added) * trunk/gui/vizservers/pymol/layer0/Parse.c (added) * trunk/gui/vizservers/pymol/layer0/Parse.h (added) * trunk/gui/vizservers/pymol/layer0/Pixmap.c (added) * trunk/gui/vizservers/pymol/layer0/Pixmap.h (added) * trunk/gui/vizservers/pymol/layer0/PyMOLGlobals.h (added) * trunk/gui/vizservers/pymol/layer0/PyMOLOptions.h (added) * trunk/gui/vizservers/pymol/layer0/Queue.c (added) * trunk/gui/vizservers/pymol/layer0/Queue.h (added) * trunk/gui/vizservers/pymol/layer0/Raw.c (added) * trunk/gui/vizservers/pymol/layer0/Raw.h (added) * trunk/gui/vizservers/pymol/layer0/Sphere.c (added) * trunk/gui/vizservers/pymol/layer0/Sphere.h (added) * trunk/gui/vizservers/pymol/layer0/SphereData.h (added) * trunk/gui/vizservers/pymol/layer0/Tetsurf.c (added) * trunk/gui/vizservers/pymol/layer0/Tetsurf.h (added) * trunk/gui/vizservers/pymol/layer0/Texture.c (added) * trunk/gui/vizservers/pymol/layer0/Texture.h (added) * trunk/gui/vizservers/pymol/layer0/Tracker.c (added) * trunk/gui/vizservers/pymol/layer0/Tracker.h (added) * trunk/gui/vizservers/pymol/layer0/Triangle.c (added) * trunk/gui/vizservers/pymol/layer0/Triangle.h (added) * trunk/gui/vizservers/pymol/layer0/Util.c (added) * trunk/gui/vizservers/pymol/layer0/Util.h (added) * trunk/gui/vizservers/pymol/layer0/Vector.c (added) * trunk/gui/vizservers/pymol/layer0/Vector.h (added) * trunk/gui/vizservers/pymol/layer0/Version.h (added) * trunk/gui/vizservers/pymol/layer0/Word.c (added) * trunk/gui/vizservers/pymol/layer0/Word.h (added) * trunk/gui/vizservers/pymol/layer0/os_gl.c (added) * trunk/gui/vizservers/pymol/layer0/os_gl.h (added) * trunk/gui/vizservers/pymol/layer0/os_limits.h (added) * trunk/gui/vizservers/pymol/layer0/os_predef.h (added) * trunk/gui/vizservers/pymol/layer0/os_proprietary.h (added) * trunk/gui/vizservers/pymol/layer0/os_python.h (added) * trunk/gui/vizservers/pymol/layer0/os_std.h (added) * trunk/gui/vizservers/pymol/layer0/os_time.h (added) * trunk/gui/vizservers/pymol/layer0/os_types.h (added) * trunk/gui/vizservers/pymol/layer0/os_unix.h (added) * trunk/gui/vizservers/pymol/layer1 (added) * trunk/gui/vizservers/pymol/layer1/Basis.c (added) * trunk/gui/vizservers/pymol/layer1/Basis.h (added) * trunk/gui/vizservers/pymol/layer1/ButMode.c (added) * trunk/gui/vizservers/pymol/layer1/ButMode.h (added) * trunk/gui/vizservers/pymol/layer1/CGO.c (added) * trunk/gui/vizservers/pymol/layer1/CGO.h (added) * trunk/gui/vizservers/pymol/layer1/Character.c (added) * trunk/gui/vizservers/pymol/layer1/Character.h (added) * trunk/gui/vizservers/pymol/layer1/Color.c (added) * trunk/gui/vizservers/pymol/layer1/Color.h (added) * trunk/gui/vizservers/pymol/layer1/Control.c (added) * trunk/gui/vizservers/pymol/layer1/Control.h (added) * trunk/gui/vizservers/pymol/layer1/Extrude.c (added) * trunk/gui/vizservers/pymol/layer1/Extrude.h (added) * trunk/gui/vizservers/pymol/layer1/Font.c (added) * trunk/gui/vizservers/pymol/layer1/Font.h (added) * trunk/gui/vizservers/pymol/layer1/FontGLUT.c (added) * trunk/gui/vizservers/pymol/layer1/FontGLUT.h (added) * trunk/gui/vizservers/pymol/layer1/FontGLUT8x13.c (added) * trunk/gui/vizservers/pymol/layer1/FontGLUT9x15.c (added) * trunk/gui/vizservers/pymol/layer1/FontGLUTHel10.c (added) * trunk/gui/vizservers/pymol/layer1/FontGLUTHel12.c (added) * trunk/gui/vizservers/pymol/layer1/FontGLUTHel18.c (added) * trunk/gui/vizservers/pymol/layer1/FontTTF.h (added) * trunk/gui/vizservers/pymol/layer1/FontTTF2.h (added) * trunk/gui/vizservers/pymol/layer1/FontType.c (added) * trunk/gui/vizservers/pymol/layer1/FontType.h (added) * trunk/gui/vizservers/pymol/layer1/Makefile.am (added) * trunk/gui/vizservers/pymol/layer1/Makefile.delsci (added) * trunk/gui/vizservers/pymol/layer1/Makefile.in (added) * trunk/gui/vizservers/pymol/layer1/Movie.c (added) * trunk/gui/vizservers/pymol/layer1/Movie.h (added) * trunk/gui/vizservers/pymol/layer1/Ortho.c (added) * trunk/gui/vizservers/pymol/layer1/Ortho.h (added) * trunk/gui/vizservers/pymol/layer1/P.c (added) * trunk/gui/vizservers/pymol/layer1/P.h (added) * trunk/gui/vizservers/pymol/layer1/PConv.c (added) * trunk/gui/vizservers/pymol/layer1/PConv.h (added) * trunk/gui/vizservers/pymol/layer1/Pop.c (added) * trunk/gui/vizservers/pymol/layer1/Pop.h (added) * trunk/gui/vizservers/pymol/layer1/PyMOLObject.c (added) * trunk/gui/vizservers/pymol/layer1/PyMOLObject.h (added) * trunk/gui/vizservers/pymol/layer1/Ray.c (added) * trunk/gui/vizservers/pymol/layer1/Ray.h (added) * trunk/gui/vizservers/pymol/layer1/Rep.c (added) * trunk/gui/vizservers/pymol/layer1/Rep.h (added) * trunk/gui/vizservers/pymol/layer1/Scene.c (added) * trunk/gui/vizservers/pymol/layer1/Scene.h (added) * trunk/gui/vizservers/pymol/layer1/ScrollBar.c (added) * trunk/gui/vizservers/pymol/layer1/ScrollBar.h (added) * trunk/gui/vizservers/pymol/layer1/Seq.c (added) * trunk/gui/vizservers/pymol/layer1/Seq.h (added) * trunk/gui/vizservers/pymol/layer1/Setting.c (added) * trunk/gui/vizservers/pymol/layer1/Setting.h (added) * trunk/gui/vizservers/pymol/layer1/Shaker.c (added) * trunk/gui/vizservers/pymol/layer1/Shaker.h (added) * trunk/gui/vizservers/pymol/layer1/Symmetry.c (added) * trunk/gui/vizservers/pymol/layer1/Symmetry.h (added) * trunk/gui/vizservers/pymol/layer1/Text.c (added) * trunk/gui/vizservers/pymol/layer1/Text.h (added) * trunk/gui/vizservers/pymol/layer1/TypeFace.c (added) * trunk/gui/vizservers/pymol/layer1/TypeFace.h (added) * trunk/gui/vizservers/pymol/layer1/View.c (added) * trunk/gui/vizservers/pymol/layer1/View.h (added) * trunk/gui/vizservers/pymol/layer1/Wizard.c (added) * trunk/gui/vizservers/pymol/layer1/Wizard.h (added) * trunk/gui/vizservers/pymol/layer2 (added) * trunk/gui/vizservers/pymol/layer2/AtomInfo.c (added) * trunk/gui/vizservers/pymol/layer2/AtomInfo.h (added) * trunk/gui/vizservers/pymol/layer2/CoordSet.c (added) * trunk/gui/vizservers/pymol/layer2/CoordSet.h (added) * trunk/gui/vizservers/pymol/layer2/DistSet.c (added) * trunk/gui/vizservers/pymol/layer2/DistSet.h (added) * trunk/gui/vizservers/pymol/layer2/GadgetSet.c (added) * trunk/gui/vizservers/pymol/layer2/GadgetSet.h (added) * trunk/gui/vizservers/pymol/layer2/Makefile.am (added) * trunk/gui/vizservers/pymol/layer2/Makefile.delsci (added) * trunk/gui/vizservers/pymol/layer2/Makefile.in (added) * trunk/gui/vizservers/pymol/layer2/ObjectAlignment.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectAlignment.h (added) * trunk/gui/vizservers/pymol/layer2/ObjectCGO.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectCGO.h (added) * trunk/gui/vizservers/pymol/layer2/ObjectCallback.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectCallback.h (added) * trunk/gui/vizservers/pymol/layer2/ObjectDist.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectDist.h (added) * trunk/gui/vizservers/pymol/layer2/ObjectGadget.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectGadget.h (added) * trunk/gui/vizservers/pymol/layer2/ObjectGadgetRamp.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectGadgetRamp.h (added) * trunk/gui/vizservers/pymol/layer2/ObjectGroup.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectGroup.h (added) * trunk/gui/vizservers/pymol/layer2/ObjectMap.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectMap.h (added) * trunk/gui/vizservers/pymol/layer2/ObjectMesh.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectMesh.h (added) * trunk/gui/vizservers/pymol/layer2/ObjectMolecule.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectMolecule.h (added) * trunk/gui/vizservers/pymol/layer2/ObjectMolecule2.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectSlice.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectSlice.h (added) * trunk/gui/vizservers/pymol/layer2/ObjectSurface.c (added) * trunk/gui/vizservers/pymol/layer2/ObjectSurface.h (added) * trunk/gui/vizservers/pymol/layer2/RepAngle.c (added) * trunk/gui/vizservers/pymol/layer2/RepAngle.h (added) * trunk/gui/vizservers/pymol/layer2/RepCartoon.c (added) * trunk/gui/vizservers/pymol/layer2/RepCartoon.h (added) * trunk/gui/vizservers/pymol/layer2/RepCylBond.c (added) * trunk/gui/vizservers/pymol/layer2/RepCylBond.h (added) * trunk/gui/vizservers/pymol/layer2/RepDihedral.c (added) * trunk/gui/vizservers/pymol/layer2/RepDihedral.h (added) * trunk/gui/vizservers/pymol/layer2/RepDistDash.c (added) * trunk/gui/vizservers/pymol/layer2/RepDistDash.h (added) * trunk/gui/vizservers/pymol/layer2/RepDistLabel.c (added) * trunk/gui/vizservers/pymol/layer2/RepDistLabel.h (added) * trunk/gui/vizservers/pymol/layer2/RepDot.c (added) * trunk/gui/vizservers/pymol/layer2/RepDot.h (added) * trunk/gui/vizservers/pymol/layer2/RepLabel.c (added) * trunk/gui/vizservers/pymol/layer2/RepLabel.h (added) * trunk/gui/vizservers/pymol/layer2/RepMesh.c (added) * trunk/gui/vizservers/pymol/layer2/RepMesh.h (added) * trunk/gui/vizservers/pymol/layer2/RepNonbonded.c (added) * trunk/gui/vizservers/pymol/layer2/RepNonbonded.h (added) * trunk/gui/vizservers/pymol/layer2/RepNonbondedSphere.c (added) * trunk/gui/vizservers/pymol/layer2/RepNonbondedSphere.h (added) * trunk/gui/vizservers/pymol/layer2/RepRibbon.c (added) * trunk/gui/vizservers/pymol/layer2/RepRibbon.h (added) * trunk/gui/vizservers/pymol/layer2/RepSphere.c (added) * trunk/gui/vizservers/pymol/layer2/RepSphere.h (added) * trunk/gui/vizservers/pymol/layer2/RepSurface.c (added) * trunk/gui/vizservers/pymol/layer2/RepSurface.h (added) * trunk/gui/vizservers/pymol/layer2/RepWireBond.c (added) * trunk/gui/vizservers/pymol/layer2/RepWireBond.h (added) * trunk/gui/vizservers/pymol/layer2/Sculpt.c (added) * trunk/gui/vizservers/pymol/layer2/Sculpt.h (added) * trunk/gui/vizservers/pymol/layer2/SculptCache.c (added) * trunk/gui/vizservers/pymol/layer2/SculptCache.h (added) * trunk/gui/vizservers/pymol/layer2/VFont.c (added) * trunk/gui/vizservers/pymol/layer2/VFont.h (added) * trunk/gui/vizservers/pymol/layer3 (added) * trunk/gui/vizservers/pymol/layer3/Editor.c (added) * trunk/gui/vizservers/pymol/layer3/Editor.h (added) * trunk/gui/vizservers/pymol/layer3/Executive.c (added) * trunk/gui/vizservers/pymol/layer3/Executive.h (added) * trunk/gui/vizservers/pymol/layer3/Makefile.am (added) * trunk/gui/vizservers/pymol/layer3/Makefile.delsci (added) * trunk/gui/vizservers/pymol/layer3/Makefile.in (added) * trunk/gui/vizservers/pymol/layer3/PlugIOManager.c (added) * trunk/gui/vizservers/pymol/layer3/PlugIOManager.h (added) * trunk/gui/vizservers/pymol/layer3/Seeker.c (added) * trunk/gui/vizservers/pymol/layer3/Seeker.h (added) * trunk/gui/vizservers/pymol/layer3/Selector.c (added) * trunk/gui/vizservers/pymol/layer3/Selector.h (added) * trunk/gui/vizservers/pymol/layer4 (added) * trunk/gui/vizservers/pymol/layer4/Cmd.c (added) * trunk/gui/vizservers/pymol/layer4/Cmd.h (added) * trunk/gui/vizservers/pymol/layer4/Export.c (added) * trunk/gui/vizservers/pymol/layer4/Export.h (added) * trunk/gui/vizservers/pymol/layer4/Makefile.am (added) * trunk/gui/vizservers/pymol/layer4/Makefile.delsci (added) * trunk/gui/vizservers/pymol/layer4/Makefile.in (added) * trunk/gui/vizservers/pymol/layer4/Menu.c (added) * trunk/gui/vizservers/pymol/layer4/Menu.h (added) * trunk/gui/vizservers/pymol/layer4/PopUp.c (added) * trunk/gui/vizservers/pymol/layer4/PopUp.h (added) * trunk/gui/vizservers/pymol/layer5 (added) * trunk/gui/vizservers/pymol/layer5/Makefile.am (added) * trunk/gui/vizservers/pymol/layer5/Makefile.delsci (added) * trunk/gui/vizservers/pymol/layer5/Makefile.in (added) * trunk/gui/vizservers/pymol/layer5/PyMOL.c (added) * trunk/gui/vizservers/pymol/layer5/PyMOL.h (added) * trunk/gui/vizservers/pymol/layer5/TestPyMOL.c (added) * trunk/gui/vizservers/pymol/layer5/TestPyMOL.h (added) * trunk/gui/vizservers/pymol/layer5/main.c (added) * trunk/gui/vizservers/pymol/layer5/main.h (added) * trunk/gui/vizservers/pymol/ltmain.sh (added) * trunk/gui/vizservers/pymol/missing (added) * trunk/gui/vizservers/pymol/modules (added) * trunk/gui/vizservers/pymol/modules/chempy (added) * trunk/gui/vizservers/pymol/modules/chempy/__init__.py (added) * trunk/gui/vizservers/pymol/modules/chempy/arc.py (added) * trunk/gui/vizservers/pymol/modules/chempy/bmin (added) * trunk/gui/vizservers/pymol/modules/chempy/bmin/__init__.py (added) * trunk/gui/vizservers/pymol/modules/chempy/bmin/commands.py (added) * trunk/gui/vizservers/pymol/modules/chempy/bmin/realtime.py (added) * trunk/gui/vizservers/pymol/modules/chempy/bmin/state.py (added) * trunk/gui/vizservers/pymol/modules/chempy/bmin/util.py (added) * trunk/gui/vizservers/pymol/modules/chempy/bond_amber.py (added) * trunk/gui/vizservers/pymol/modules/chempy/bond_mmff.py (added) * trunk/gui/vizservers/pymol/modules/chempy/bonds.py (added) * trunk/gui/vizservers/pymol/modules/chempy/brick.py (added) * trunk/gui/vizservers/pymol/modules/chempy/cc1.py (added) * trunk/gui/vizservers/pymol/modules/chempy/cex.py (added) * trunk/gui/vizservers/pymol/modules/chempy/champ (added) * trunk/gui/vizservers/pymol/modules/chempy/champ/__init__.py (added) * trunk/gui/vizservers/pymol/modules/chempy/champ/amber99.py (added) * trunk/gui/vizservers/pymol/modules/chempy/champ/assign.py (added) * trunk/gui/vizservers/pymol/modules/chempy/champ/formal_charges.py (added) * trunk/gui/vizservers/pymol/modules/chempy/charge.py (added) * trunk/gui/vizservers/pymol/modules/chempy/cpv.py (added) * trunk/gui/vizservers/pymol/modules/chempy/dictdb.py (added) * trunk/gui/vizservers/pymol/modules/chempy/fast (added) * trunk/gui/vizservers/pymol/modules/chempy/fast/__init__.py (added) * trunk/gui/vizservers/pymol/modules/chempy/fragments (added) * trunk/gui/vizservers/pymol/modules/chempy/fragments/__init__.py (added) * trunk/gui/vizservers/pymol/modules/chempy/gamess1.py (added) * trunk/gui/vizservers/pymol/modules/chempy/gms.py (added) * trunk/gui/vizservers/pymol/modules/chempy/hetatm.py (added) * trunk/gui/vizservers/pymol/modules/chempy/io.py (added) * trunk/gui/vizservers/pymol/modules/chempy/lst.py (added) * trunk/gui/vizservers/pymol/modules/chempy/mae.py (added) * trunk/gui/vizservers/pymol/modules/chempy/map.py (added) * trunk/gui/vizservers/pymol/modules/chempy/mass.py (added) * trunk/gui/vizservers/pymol/modules/chempy/mmd.py (added) * trunk/gui/vizservers/pymol/modules/chempy/models.py (added) * trunk/gui/vizservers/pymol/modules/chempy/mol.py (added) * trunk/gui/vizservers/pymol/modules/chempy/neighbor.py (added) * trunk/gui/vizservers/pymol/modules/chempy/pdb.py (added) * trunk/gui/vizservers/pymol/modules/chempy/pkl.py (added) * trunk/gui/vizservers/pymol/modules/chempy/place.py (added) * trunk/gui/vizservers/pymol/modules/chempy/protein.py (added) * trunk/gui/vizservers/pymol/modules/chempy/protein_amber.py (added) * trunk/gui/vizservers/pymol/modules/chempy/protein_amber99.py (added) * trunk/gui/vizservers/pymol/modules/chempy/protein_mmff.py (added) * trunk/gui/vizservers/pymol/modules/chempy/protein_residues.py (added) * trunk/gui/vizservers/pymol/modules/chempy/sdf.py (added) * trunk/gui/vizservers/pymol/modules/chempy/solvate.py (added) * trunk/gui/vizservers/pymol/modules/chempy/tinker (added) * trunk/gui/vizservers/pymol/modules/chempy/tinker/__init__.py (added) * trunk/gui/vizservers/pymol/modules/chempy/tinker/amber.py (added) * trunk/gui/vizservers/pymol/modules/chempy/tinker/keyword.py (added) * trunk/gui/vizservers/pymol/modules/chempy/tinker/realtime.py (added) * trunk/gui/vizservers/pymol/modules/chempy/tinker/state.py (added) * trunk/gui/vizservers/pymol/modules/chempy/water_amber.py (added) * trunk/gui/vizservers/pymol/modules/chempy/water_residues.py (added) * trunk/gui/vizservers/pymol/modules/chempy/xyz.py (added) * trunk/gui/vizservers/pymol/modules/compile_pymol.py (added) * trunk/gui/vizservers/pymol/modules/launch_pymol.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/ColorEditor.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/Demo.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/PMGApp.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/SetEditor.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/Setting.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/pmw.tgz (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/skins (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/skins/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/skins/normal (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/skins/normal/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/skins/normal/builder.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/startup (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/startup/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/startup/apbs_tools.py (added) * trunk/gui/vizservers/pymol/modules/pmg_tk/startup/remote_pdb_load.py (added) * trunk/gui/vizservers/pymol/modules/pmg_wx (added) * trunk/gui/vizservers/pymol/modules/pmg_wx/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pymol (added) * trunk/gui/vizservers/pymol/modules/pymol/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pymol/api.py (added) * trunk/gui/vizservers/pymol/modules/pymol/callback.py (added) * trunk/gui/vizservers/pymol/modules/pymol/cgo.py (added) * trunk/gui/vizservers/pymol/modules/pymol/cmd.py (added) * trunk/gui/vizservers/pymol/modules/pymol/commanding.py (added) * trunk/gui/vizservers/pymol/modules/pymol/completing.py (added) * trunk/gui/vizservers/pymol/modules/pymol/contrib.py (added) * trunk/gui/vizservers/pymol/modules/pymol/controlling.py (added) * trunk/gui/vizservers/pymol/modules/pymol/creating.py (added) * trunk/gui/vizservers/pymol/modules/pymol/editing.py (added) * trunk/gui/vizservers/pymol/modules/pymol/editor.py (added) * trunk/gui/vizservers/pymol/modules/pymol/embed (added) * trunk/gui/vizservers/pymol/modules/pymol/embed/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pymol/embed/epymol (added) * trunk/gui/vizservers/pymol/modules/pymol/embed/epymol/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pymol/embed/wxpymol (added) * trunk/gui/vizservers/pymol/modules/pymol/embed/wxpymol/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pymol/experimenting.py (added) * trunk/gui/vizservers/pymol/modules/pymol/exporting.py (added) * trunk/gui/vizservers/pymol/modules/pymol/externing.py (added) * trunk/gui/vizservers/pymol/modules/pymol/fitting.py (added) * trunk/gui/vizservers/pymol/modules/pymol/helping.py (added) * trunk/gui/vizservers/pymol/modules/pymol/importing.py (added) * trunk/gui/vizservers/pymol/modules/pymol/invocation.py (added) * trunk/gui/vizservers/pymol/modules/pymol/keyboard.py (added) * trunk/gui/vizservers/pymol/modules/pymol/keywords.py (added) * trunk/gui/vizservers/pymol/modules/pymol/m4x.py (added) * trunk/gui/vizservers/pymol/modules/pymol/menu.py (added) * trunk/gui/vizservers/pymol/modules/pymol/movie.py (added) * trunk/gui/vizservers/pymol/modules/pymol/moving.py (added) * trunk/gui/vizservers/pymol/modules/pymol/opengl (added) * trunk/gui/vizservers/pymol/modules/pymol/opengl/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pymol/opengl/gl (added) * trunk/gui/vizservers/pymol/modules/pymol/opengl/gl/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pymol/opengl/gl/glconst.py (added) * trunk/gui/vizservers/pymol/modules/pymol/opengl/glu (added) * trunk/gui/vizservers/pymol/modules/pymol/opengl/glu/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pymol/opengl/glu/gluconst.py (added) * trunk/gui/vizservers/pymol/modules/pymol/opengl/glut (added) * trunk/gui/vizservers/pymol/modules/pymol/opengl/glut/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pymol/opengl/glut/glutconst.py (added) * trunk/gui/vizservers/pymol/modules/pymol/parser.py (added) * trunk/gui/vizservers/pymol/modules/pymol/parsing.py (added) * trunk/gui/vizservers/pymol/modules/pymol/povray.py (added) * trunk/gui/vizservers/pymol/modules/pymol/preset.py (added) * trunk/gui/vizservers/pymol/modules/pymol/querying.py (added) * trunk/gui/vizservers/pymol/modules/pymol/rpc.py (added) * trunk/gui/vizservers/pymol/modules/pymol/selecting.py (added) * trunk/gui/vizservers/pymol/modules/pymol/selector.py (added) * trunk/gui/vizservers/pymol/modules/pymol/setting.py (added) * trunk/gui/vizservers/pymol/modules/pymol/shortcut.py (added) * trunk/gui/vizservers/pymol/modules/pymol/util.py (added) * trunk/gui/vizservers/pymol/modules/pymol/vfont.py (added) * trunk/gui/vizservers/pymol/modules/pymol/viewing.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/__init__.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/annotation.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/appearance.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/benchmark.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/box.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/charge.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/cleanup.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/demo.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/density.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/distance.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/dragging.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/fedora.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/filter.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/label.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/measurement.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/message.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/mutagenesis.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/pair_fit.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/renaming.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/sculpting.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/security.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/stereodemo.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizard/toggle.py (added) * trunk/gui/vizservers/pymol/modules/pymol/wizarding.py (added) * trunk/gui/vizservers/pymol/modules/pymol/xray.py (added) * trunk/gui/vizservers/pymol/modules/pymol/xwin.py (added) * trunk/gui/vizservers/pymol/modules/sitecustomize.py (added) * trunk/gui/vizservers/pymol/ov (added) * trunk/gui/vizservers/pymol/ov/src (added) * trunk/gui/vizservers/pymol/ov/src/Makefile.am (added) * trunk/gui/vizservers/pymol/ov/src/Makefile.delsci (added) * trunk/gui/vizservers/pymol/ov/src/Makefile.in (added) * trunk/gui/vizservers/pymol/ov/src/OVContext.c (added) * trunk/gui/vizservers/pymol/ov/src/OVContext.h (added) * trunk/gui/vizservers/pymol/ov/src/OVHeap.c (added) * trunk/gui/vizservers/pymol/ov/src/OVHeap.h (added) * trunk/gui/vizservers/pymol/ov/src/OVHeapArray.c (added) * trunk/gui/vizservers/pymol/ov/src/OVHeapArray.h (added) * trunk/gui/vizservers/pymol/ov/src/OVLexicon.c (added) * trunk/gui/vizservers/pymol/ov/src/OVLexicon.h (added) * trunk/gui/vizservers/pymol/ov/src/OVOneToAny.c (added) * trunk/gui/vizservers/pymol/ov/src/OVOneToAny.h (added) * trunk/gui/vizservers/pymol/ov/src/OVOneToOne.c (added) * trunk/gui/vizservers/pymol/ov/src/OVOneToOne.h (added) * trunk/gui/vizservers/pymol/ov/src/OVRandom.c (added) * trunk/gui/vizservers/pymol/ov/src/OVRandom.h (added) * trunk/gui/vizservers/pymol/ov/src/OVreturns.h (added) * trunk/gui/vizservers/pymol/ov/src/ov_port.h (added) * trunk/gui/vizservers/pymol/ov/src/ov_types.h (added) * trunk/gui/vizservers/pymol/ov/src/ov_utility.c (added) * trunk/gui/vizservers/pymol/ov/src/ov_utility.h (added) * trunk/gui/vizservers/pymol/products (added) * trunk/gui/vizservers/pymol/products/.preserve (added) * trunk/gui/vizservers/pymol/scripts (added) * trunk/gui/vizservers/pymol/scripts/metaphorics (added) * trunk/gui/vizservers/pymol/scripts/metaphorics/alignment.pml (added) * trunk/gui/vizservers/pymol/scripts/metaphorics/annotate.pml (added) * trunk/gui/vizservers/pymol/scripts/metaphorics/fedora.pml (added) * trunk/gui/vizservers/pymol/setup (added) * trunk/gui/vizservers/pymol/setup.py (added) * trunk/gui/vizservers/pymol/setup/INSTALL.unix-mindep (added) * trunk/gui/vizservers/pymol/setup/Rules.alpha (added) * trunk/gui/vizservers/pymol/setup/Rules.irix-mindep (added) * trunk/gui/vizservers/pymol/setup/Rules.linux (added) * trunk/gui/vizservers/pymol/setup/Rules.linux-rh7x (added) * trunk/gui/vizservers/pymol/setup/Rules.linux-rpm-rh72-py21 (added) * trunk/gui/vizservers/pymol/setup/Rules.linux-rpm-rh72-py21n (added) * trunk/gui/vizservers/pymol/setup/Rules.linux-rpm-rh73-py22 (added) * trunk/gui/vizservers/pymol/setup/Rules.linux-rpm-rh90-py22 (added) * trunk/gui/vizservers/pymol/setup/Rules.make (added) * trunk/gui/vizservers/pymol/setup/Rules.osx-fink (added) * trunk/gui/vizservers/pymol/setup/Rules.osx-framework (added) * trunk/gui/vizservers/pymol/setup/Rules.sunos5 (added) * trunk/gui/vizservers/pymol/setup/Rules.sunos5-mindep (added) * trunk/gui/vizservers/pymol/setup/Rules.sunos5-semistat (added) * trunk/gui/vizservers/pymol/setup/pymol.com.basic (added) * trunk/gui/vizservers/pymol/setup/pymol.com.linux-rh7x (added) * trunk/gui/vizservers/pymol/setup/pymol.com.linux-rpm-rh72-py21 (added) * trunk/gui/vizservers/pymol/setup/pymol.com.linux-rpm-rh73-py22 (added) * trunk/gui/vizservers/pymol/setup/pymol.com.osx-fink (added) * trunk/gui/vizservers/pymol/setup/pymol.com.template (added) * trunk/gui/vizservers/pymol/setup/pymol.csh.template (added) * trunk/gui/vizservers/pymol/setup/sample.pymolrc (added) * trunk/gui/vizservers/pymol/setup/setup.sh (added) * trunk/gui/vizservers/pymol/setup/setup.sh.macosx-x11 (added) * trunk/gui/vizservers/pymol/setup/setup.sh.unix-helper (added) * trunk/gui/vizservers/pymol/setup/setup.sh.unix-mindep (added) * trunk/gui/vizservers/pymol/setup2.py (added) * trunk/gui/vizservers/pymol/test (added) * trunk/gui/vizservers/pymol/test/README (added) * trunk/gui/vizservers/pymol/test/cyg (added) * trunk/gui/vizservers/pymol/test/dat (added) * trunk/gui/vizservers/pymol/test/dat/1tii.pdb (added) * trunk/gui/vizservers/pymol/test/dat/3al1.pdb (added) * trunk/gui/vizservers/pymol/test/dat/3al1.r3d (added) * trunk/gui/vizservers/pymol/test/dat/embed01.p1m (added) * trunk/gui/vizservers/pymol/test/dat/embed02.p1m (added) * trunk/gui/vizservers/pymol/test/dat/embed03.p1m (added) * trunk/gui/vizservers/pymol/test/dat/embed04.p1m (added) * trunk/gui/vizservers/pymol/test/dat/embed05.p1m (added) * trunk/gui/vizservers/pymol/test/dat/embed06.p1m (added) * trunk/gui/vizservers/pymol/test/dat/helix_amber.pdb (added) * trunk/gui/vizservers/pymol/test/dat/il2.pdb (added) * trunk/gui/vizservers/pymol/test/dat/ligs3d.sdf (added) * trunk/gui/vizservers/pymol/test/dat/names.pdb (added) * trunk/gui/vizservers/pymol/test/dat/odd01.pdb (added) * trunk/gui/vizservers/pymol/test/dat/odd02.pdb (added) * trunk/gui/vizservers/pymol/test/dat/pept.pdb (added) * trunk/gui/vizservers/pymol/test/dat/pept.pkl (added) * trunk/gui/vizservers/pymol/test/dat/pept.r3d (added) * trunk/gui/vizservers/pymol/test/dat/small01.mol (added) * trunk/gui/vizservers/pymol/test/dat/small02.pdb (added) * trunk/gui/vizservers/pymol/test/dat/small03.mol2 (added) * trunk/gui/vizservers/pymol/test/dat/tiny.pdb (added) * trunk/gui/vizservers/pymol/test/dat/water.pdb (added) * trunk/gui/vizservers/pymol/test/inp (added) * trunk/gui/vizservers/pymol/test/inp/B01.py (added) * trunk/gui/vizservers/pymol/test/inp/B02.py (added) * trunk/gui/vizservers/pymol/test/inp/B03.py (added) * trunk/gui/vizservers/pymol/test/inp/B04.py (added) * trunk/gui/vizservers/pymol/test/inp/B05.py (added) * trunk/gui/vizservers/pymol/test/inp/B06.py (added) * trunk/gui/vizservers/pymol/test/inp/B07.py (added) * trunk/gui/vizservers/pymol/test/inp/B08.py (added) * trunk/gui/vizservers/pymol/test/inp/B09.py (added) * trunk/gui/vizservers/pymol/test/inp/B10.py (added) * trunk/gui/vizservers/pymol/test/inp/B11.py (added) * trunk/gui/vizservers/pymol/test/inp/C0001quit.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0010hello.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0020pdb.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0021pdbstr.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0025mol.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0026sdf.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0027mol2.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0030pkl.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0050multi.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0060delete.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0070rep.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0080create.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0100select.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0105names.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0106order.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0140iterate.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0150alter.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0160get.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0170scene.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0180embed.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0181embed.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0200feedback.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0201extend.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0202help_python.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0300session.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0500misc.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0550pseudo.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0600util.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0700odd.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0740multipdb.pml (added) * trunk/gui/vizservers/pymol/test/inp/C0800matrices.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1000viewing.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1010helping.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1020querying.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1030selecting.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1035wildcards.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1040editing.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1050fitting.py (added) * trunk/gui/vizservers/pymol/test/inp/C1060controlling.py (added) * trunk/gui/vizservers/pymol/test/inp/C1070exporting.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1080isomore.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1090coulomb.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1095slice.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1100do.py (added) * trunk/gui/vizservers/pymol/test/inp/C1110matrix_mode.pml (added) * trunk/gui/vizservers/pymol/test/inp/C1200matrix_maps.pml (added) * trunk/gui/vizservers/pymol/test/inp/C2000returns.py (added) * trunk/gui/vizservers/pymol/test/inp/L0010ccp4read.pml (added) * trunk/gui/vizservers/pymol/test/inp/L0020xplorread.pml (added) * trunk/gui/vizservers/pymol/test/inp/L0030isomesh.pml (added) * trunk/gui/vizservers/pymol/test/inp/L0040isomesh2.pml (added) * trunk/gui/vizservers/pymol/test/inp/L0100isomisc.pml (added) * trunk/gui/vizservers/pymol/test/inp/L0200electro.pml (added) * trunk/gui/vizservers/pymol/test/inp/T01.py (added) * trunk/gui/vizservers/pymol/test/inp/T02.py (added) * trunk/gui/vizservers/pymol/test/inp/T03.py (added) * trunk/gui/vizservers/pymol/test/inp/T04.py (added) * trunk/gui/vizservers/pymol/test/inp/U01.pml (added) * trunk/gui/vizservers/pymol/test/ref (added) * trunk/gui/vizservers/pymol/test/ref/C0001quit.log (added) * trunk/gui/vizservers/pymol/test/ref/C0010hello.log (added) * trunk/gui/vizservers/pymol/test/ref/C0020pdb.log (added) * trunk/gui/vizservers/pymol/test/ref/C0020pdb.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0021pdbstr.log (added) * trunk/gui/vizservers/pymol/test/ref/C0025mol.log (added) * trunk/gui/vizservers/pymol/test/ref/C0026sdf.log (added) * trunk/gui/vizservers/pymol/test/ref/C0027mol2.log (added) * trunk/gui/vizservers/pymol/test/ref/C0030pkl.log (added) * trunk/gui/vizservers/pymol/test/ref/C0030pkl.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0050multi.log (added) * trunk/gui/vizservers/pymol/test/ref/C0060delete.log (added) * trunk/gui/vizservers/pymol/test/ref/C0070rep.log (added) * trunk/gui/vizservers/pymol/test/ref/C0080create.1.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0080create.2.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0080create.log (added) * trunk/gui/vizservers/pymol/test/ref/C0100select.log (added) * trunk/gui/vizservers/pymol/test/ref/C0105names.log (added) * trunk/gui/vizservers/pymol/test/ref/C0106order.log (added) * trunk/gui/vizservers/pymol/test/ref/C0140iterate.log (added) * trunk/gui/vizservers/pymol/test/ref/C0150alter.1.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0150alter.log (added) * trunk/gui/vizservers/pymol/test/ref/C0160get.log (added) * trunk/gui/vizservers/pymol/test/ref/C0170scene.log (added) * trunk/gui/vizservers/pymol/test/ref/C0180embed.log (added) * trunk/gui/vizservers/pymol/test/ref/C0181embed.log (added) * trunk/gui/vizservers/pymol/test/ref/C0200feedback.log (added) * trunk/gui/vizservers/pymol/test/ref/C0201extend.log (added) * trunk/gui/vizservers/pymol/test/ref/C0202help_python.log (added) * trunk/gui/vizservers/pymol/test/ref/C0300session.log (added) * trunk/gui/vizservers/pymol/test/ref/C0500misc.log (added) * trunk/gui/vizservers/pymol/test/ref/C0550pseudo.log (added) * trunk/gui/vizservers/pymol/test/ref/C0600util.log (added) * trunk/gui/vizservers/pymol/test/ref/C0700.odd.G.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700.odd.H.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.1.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.2.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.3.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.4.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.5.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.6.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.7.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.8.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.9.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.A.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.B.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.C.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.D.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.E.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.F.pdb (added) * trunk/gui/vizservers/pymol/test/ref/C0700odd.log (added) * trunk/gui/vizservers/pymol/test/ref/C0740multipdb.log (added) * trunk/gui/vizservers/pymol/test/ref/C0800matrices.log (added) * trunk/gui/vizservers/pymol/test/ref/C1000viewing.log (added) * trunk/gui/vizservers/pymol/test/ref/C1010helping.log (added) * trunk/gui/vizservers/pymol/test/ref/C1020querying.log (added) * trunk/gui/vizservers/pymol/test/ref/C1030selecting.log (added) * trunk/gui/vizservers/pymol/test/ref/C1035wildcards.log (added) * trunk/gui/vizservers/pymol/test/ref/C1040editing.log (added) * trunk/gui/vizservers/pymol/test/ref/C1050fitting.log (added) * trunk/gui/vizservers/pymol/test/ref/C1060controlling.log (added) * trunk/gui/vizservers/pymol/test/ref/C1070exporting.log (added) * trunk/gui/vizservers/pymol/test/ref/C1080isomore.log (added) * trunk/gui/vizservers/pymol/test/ref/C1090coulomb.log (added) * trunk/gui/vizservers/pymol/test/ref/C1095slice.log (added) * trunk/gui/vizservers/pymol/test/ref/C1100do.log (added) * trunk/gui/vizservers/pymol/test/ref/C1110matrix_mode.log (added) * trunk/gui/vizservers/pymol/test/ref/C1200matrix_maps.log (added) * trunk/gui/vizservers/pymol/test/ref/C2000returns.log (added) * trunk/gui/vizservers/pymol/test/ref/L0010ccp4read.log (added) * trunk/gui/vizservers/pymol/test/ref/L0020xplorread.log (added) * trunk/gui/vizservers/pymol/test/ref/L0030isomesh.log (added) * trunk/gui/vizservers/pymol/test/ref/L0040isomesh2.log (added) * trunk/gui/vizservers/pymol/test/ref/L0100isomisc.log (added) * trunk/gui/vizservers/pymol/test/ref/L0200electro.log (added) * trunk/gui/vizservers/pymol/test/ref/T01.log (added) * trunk/gui/vizservers/pymol/test/ref/U01.log (added) * trunk/gui/vizservers/pymol/test/run (added) * trunk/gui/vizservers/pymol/test/show (added) * trunk/gui/vizservers/pymol/test/trim.py (added) * trunk/gui/vizservers/pymol/test/vdiff (added) * trunk/gui/vizservers/pymol/test/win.py (added) pymol r2915 - http://svn.sourceforge.net/svnroot/pymol/trunk/pymol Fri, 04 May 2007 19:13:55 GMT nkissebe [698] * trunk/gui/vizservers/pymolproxy/pymolproxy.c (modified) add requests (pixel count) update for nanoscale compatability ... Fri, 04 May 2007 19:12:17 GMT nkissebe [697] * trunk/gui/scripts/molvisviewer.tcl (modified) add memory reservation to make nanoscale compatible Fri, 04 May 2007 03:12:36 GMT nkissebe [696] * trunk/gui/vizservers/pymolproxy/pymolproxy.c (modified) pretty up pymolproxy error handling Fri, 04 May 2007 03:11:17 GMT nkissebe [695] * trunk/gui/scripts/molvisviewer.tcl (modified) clean up recovery of lost server connection Thu, 03 May 2007 19:32:30 GMT nkissebe [694] * trunk/gui/vizservers/pymolproxy/pymolproxy.c (modified) takes pymol execution command/arguments from own command line ... Wed, 02 May 2007 13:50:29 GMT dkearney [693] * trunk/gui/apps/simsim.tcl (modified) added support for loaders, works with nanowire and rtd, and about ... Tue, 01 May 2007 22:20:55 GMT mmc [692] * trunk/gui/scripts/textentry.tcl (modified) Fixed a problem with upload where extra blank lines were getting ... Tue, 01 May 2007 21:59:06 GMT nkissebe [691] * trunk/gui/vizservers/pymolproxy (added) * trunk/gui/vizservers/pymolproxy/Makefile (added) * trunk/gui/vizservers/pymolproxy/pymolproxy.c (added) Add pymolproxy to vizservers Tue, 01 May 2007 21:25:18 GMT nkissebe [690] * trunk/gui/scripts/molvisviewer.tcl (modified) molvisviewer.tcl: rc1 of molvisviewer Tue, 01 May 2007 21:24:08 GMT nkissebe [689] * trunk/gui/scripts/deviceEditor.tcl (modified) * trunk/gui/scripts/deviceresult.tcl (modified) add support for multiple devices (for molecule viewer) Mon, 30 Apr 2007 15:00:33 GMT dkearney [688] * trunk/gui/apps/simsim.tcl (added) adding tcl version of simsim which adds command line argument ... Sat, 28 Apr 2007 03:44:51 GMT mmc [687] * trunk/gui/scripts/textentry.tcl (modified) * trunk/tcl/scripts/library.tcl (modified) Fixed the Rappture library and element to handle binary ... Sat, 28 Apr 2007 03:43:52 GMT mmc [686] * trunk/examples/zoo/binary/tardir.tcl (modified) Fixed the untar wrapper to work properly. Seems to require a temp ... Sat, 28 Apr 2007 02:06:34 GMT mmc [685] * trunk/src/tcl/src/RpLibraryTclInterface.cc (modified) Converted Library object interface to use Tcl_Obj's so it can handle ... Fri, 27 Apr 2007 23:58:10 GMT mmc [684] * trunk/examples/zoo/binary (added) * trunk/examples/zoo/binary/tardir.tcl (added) * trunk/examples/zoo/binary/tool.xml (added) * trunk/src/tcl/src/RpEncodeTclInterface.cc (modified) * trunk/src/tcl/tests/encode.test (modified) Fixed the Rappture::encoding Tcl bindings to handle binary data ... Fri, 27 Apr 2007 13:13:32 GMT mmc [683] * trunk/gui/scripts/filexfer.tcl (modified) Fixed filexfer so that it tries to find the exportfile/importfile ... Wed, 25 Apr 2007 03:08:51 GMT mmc [682] * trunk/gui/scripts/filexfer.tcl (modified) Fixed the Rappture::filexfer::upload operation to display an error ...