nanoDDSCAT+
13 Aug 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain
Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.
Nanoindentation
28 Oct 2013 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk
Nanoindentation for Mechanical Characterization of Soft Materials
Functionalization Workbench
30 Aug 2013 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev
Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.
[Illinois]: Neural Systems Modeling Ch 1-5 Master Tool
24 Jul 2013 | Tools | Contributor(s): Jessica S Johnson, Nahil Sobh, NanoBio Node
Combination of all tools used in Chapters 1-5 of Neural Systems Modeling by Anastasio
[Illinois]: AsynchUp
16 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, NanoBio Node, Jessica S Johnson
This tool computes asynchronous updates of autoassociative networks.
[Illiniois]: SynchUp
16 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool computes synchronous updates of autoassociative networks.
[Illinois]: Predict Correct Set Up
15 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool sets up a predictor-corrector model of target tracking
[Illinois]: Direction Selectivity
13 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool implements a simple direction selective network.
[Illinois]: Temporal Difference, Iterative Dynamic Programming, and Least Mean Squares
11 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson
This tool updates state values using the Temporal Difference Algorithm.
[Illinois]: Running Average
10 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, Jessica S Johnson, NanoBio Node
This tool implements a running average of a noise series.
[Illinois] KohonenSOM
09 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, Jessica S Johnson, NanoBio Node
This tool implements the Kohonen self-organizing map (SOM) algorithm
[Illinois] A Response of a Single Neuron with Positive Feedback
This tool stimulates the pulse or step response of a single neuron with positive feedback
Hydrodynamic Particle Trapping
14 Jun 2013 | Tools | Contributor(s): Melikhan tanyerim@illinois.edu Tanyeri, John Feser, Nahil Sobh
Simulates the motion of a nanoparticle in a hydrodynamic trap.
Accurate Chemical Master Equation (ACME)
20 May 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang
Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in biological networks.
Pattern Formation in Bacterial Populations
03 May 2013 | Tools | Contributor(s): Ting Lu, John Feser, Nahil Sobh, Pratik Naik
Synthetic biology tool for engineering patterning systems.
nanoDDSCAT
23 Apr 2013 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser
Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.
Nano-Bio-Photonics Simulator
17 Feb 2012 | Tools | Contributor(s): Zuhaib Bashir Sheikh, Nahil Sobh
Simulates passage of light through biological tissue having an embedded metallic nanoparticles using FDTD
Illinois Tools: Bio Photonics Simulator
25 Jan 2012 | Tools | Contributor(s): Zuhaib Bashir Sheikh, Nahil Sobh
Simulate passage of light through biological tissue using FDTD
Illinois Tools: Optics Lab
19 May 2011 | Tools | Contributor(s): Zuhaib Bashir Sheikh, Nahil Sobh
Simulate the passage of light through multiple lenses
Illinois Tools: Nanoparticle Quantitative Lab
18 May 2011 | Tools | Contributor(s): Nahil Sobh, Zuhaib Bashir Sheikh
Quantitative Simulation of the interaction of electromagnetic wave with metallic nano-particle
Illinois Tools: Nanofilm Lab
Interaction of electromagnetic plane wave and nanoscale metallic film with subwavelength slit
Illinois Tools: Nanoparticles Array Lab
10 May 2011 | Tools | Contributor(s): Zuhaib Bashir Sheikh, Nahil Sobh
Simulate the effect of interaction of light with an array of metallic nanoparticles
Illinois Tools: Biconvex Lens
18 Apr 2011 | Tools | Contributor(s): Nahil Sobh, Zuhaib Bashir Sheikh
Apperture controlled 2D bi-convex lens with toggling capability
Illinois Tools: Optical Beam Focusing System
13 Dec 2010 | Tools | Contributor(s): Zuhaib Bashir Sheikh, Nahil Sobh, Mohammad Hazem Jaber
Generate Focused optical beams using principles of electromagnetic optics
Illinois Tool: FIONA (Fluorescence Imaging with One Nanometer Accuracy)
01 Nov 2010 | Tools | Contributor(s): Paul R Selvin, Raheem Syed, Nahil Sobh
Fluorescence Imaging with One Nanometer Accuracy