Illinois Tools: NanoGromacsDemo

By Dairui Chen1, Derrick Kearney2, Jay Mashl1, Nahil Sobh1, Eric Jakobsson1

1. University of Illinois at Urbana-Champaign 2. Purdue University

Implementation of the popular molecular dynamics software suite GROMACS

Launch Tool

You must login before you can run this tool.

Version 2.1.3 - published on 29 Mar 2016

doi:10.4231/D31C1TG95 cite this

This tool is closed source.

View All Supporting Documents



Published on


NanoGromacs is an interface for performing molecular dynamics (MD) simulations using Gromacs. NanoGromacs simplifies the task of assembling the input files required. Users can perform lipid and protein simulations by uploading their own structure file, selecting a corresponding force field, and setting the run-time parameters. Snapshots of coordinates generated by the simulation can be visualized on the nanoHUB, and corresponding structure files can be downloaded and visualized locally, for example, with PyMOL. Several of the analysis programs from Gromacs are also provided.

Powered by



Biophysics & Computational Biology Group

University of Illinois at Urbana-Champaign

Cite this work

Researchers should cite this work as follows:

  • Dairui Chen, Derrick Kearney, Jay Mashl, Nahil Sobh, Eric Jakobsson (2016), "Illinois Tools: NanoGromacsDemo," (DOI: 10.4231/D31C1TG95).

    BibTex | EndNote