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Short Course on Molecular Dynamics Simulation

By Ashlie Martini

University of California, Merced

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Lecture Number/Topic Online Lecture Video Lecture Notes Supplemental Material Suggested Exercises
Lecture 1: Basic Concepts Notes
Lecture 2: Potential Energy Functions Notes
Lecture 3: Integration Algorithms Notes
Lecture 4: Temperature Control Notes
Lecture 5: Boundary Conditions Notes
Lecture 6: Neighbor Lists Notes
Lecture 7: Initialization and Equilibrium Notes
Lecture 8: Static Properties Notes
Lecture 9: Dynamic Properties Notes
Lecture 10: Non Equilibrium MD Notes, a resource for nanoscience and nanotechnology, is supported by the National Science Foundation and other funding agencies. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.