Find information on common issues.
Ask questions and find answers from other users.
Suggest a new site feature or improvement.
Check on status of your tickets.
Atomic Resolution Brownian Dynamics
0.0 out of 5 stars
29 Nov 2016 | Tools | Contributor(s): Chris Maffeo
GPU-accelerated Brownian dynamics simulation tool for biomolecular and nanotechnological systems
Coarse Graining of Crystalline Cellulose
24 Oct 2016 | Tools | Contributor(s): Kuo Tian, Mehdi Shishehbor, Pablo Daniel Zavattieri
Bio-inspired Crystalline Nano-Cellulose coarse graining toolkit
10 Oct 2016 | Tools | Contributor(s): Aldi Hoxha, Paolo Scarbolo, Andrea Cossettini, Federico Pittino, Luca Selmi
A tool to simulate Ion Sensitive Field Effect Transistors in two dimensions
29 Apr 2016 | Tools | Contributor(s): Federico Pittino, Paolo Scarbolo, Matteo , Andrea Cossettini, Luca Selmi
A tool to simulate Electrolyte/Insulator/Semiconductor systems in one dimension
07 Mar 2016 | Tools | Contributor(s): Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev
Tool workflow for building DNA Brick structures automatically.
Molecular Dynamics Showcase Builder
09 Nov 2015 | Tools | Contributor(s): Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li
Tool to create showcases for the Molecular Dynamics Showcase viewer.
A computational method for rapid prediction of amyloid beta-fibril structures
27 Aug 2015 | Tools | Contributor(s): Hamed Tabatabaei Ghomi, Markus A. Lill
06 Aug 2015 | Tools | Contributor(s): Juan Camilo Lopez, Rohit Kaushal Tripathy, Ilias Bilionis, Marcial Gonzalez
Allows the user to sample properties of granular chains under uncertainty propagation
Gaussian processes 2D
03 Aug 2015 | Tools | Contributor(s): Ilias Bilionis, Yinuo Li, Juan Camilo Lopez
Gaussian Process 2D Sampling
Gaussian processes 1D
22 Jul 2015 | Tools | Contributor(s): Ilias Bilionis, Juan Camilo Lopez, Yinuo Li
Allows the user to sample functions from a Gaussian process.
Traction Force Microscopy
29 Jan 2015 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi
This is a tool for particle motion tracking with respect to physical forces.
Nanoindentation of Soft Elastic Materials
09 Jan 2015 | Tools | Contributor(s): Taha Goudarzi
Estimates Young's Modulus of a soft material from its force-displacement data of nanoindentaton test.
Nanoindentation of soft viscoelastic materials
Finds viscoelastic parameters of Standard Linear Solid models from experimental data
5.0 out of 5 stars
24 Sep 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain
Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.
29 Aug 2014 | Tools | Contributor(s): Mingxuan Lu, Chang Wan Han, Benjamin P Haley, Volkan Ortalan
Online IMOD tool for electron tomography
07 Mar 2014 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk
Nanoindentation for Mechanical Characterization of Soft Materials
22 Jan 2014 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser
Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.
cadnano to PDB File Converter
3.0 out of 5 stars
13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev
Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.
13 Jan 2014 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev
Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.
Tensile Mechanics of alpha-Helical Polypeptides
23 Oct 2013 | Tools | Contributor(s): Korosh Torabi, George C. Schatz
This model is capable of making quantitatively accurate predictions of force-extension behavior of a given helix-forming polypeptide sequence including its dependence on pH, temperature and ionic...