Tags: nano/bio

Tools (1-20 of 96)

  1. Replication Competent Oncolytic Virus expressing secretable trimeric TRAIL: hypothesis testing

    23 Apr 2019 | Contributor(s):: Adrianne Jenner, Paul Macklin

    Using PhysiCell to simulate a replication competent oncolytic virus expressing secretable trimeric TRAIL which induces apoptosis in nearby cells

  2. Wound Healing - Physicell

    22 Apr 2019 | Contributor(s):: Juliano Ferrari Gianlupi, Vedang Narain

    Wound healing simulation using physicell

  3. CompuCell3D - Bacterium Macrophage

    17 Apr 2019 | | Contributor(s):: Juliano Ferrari Gianlupi, Somogyi, Andy T

    Simulation of macrophage chasing bacterium

  4. Polyvalent Nanoparticle Binding Simulator

    16 Apr 2019 | | Contributor(s):: Nilsson, Lauren, JCS Kadupitiya, Vikram Jadhao

    Simulates the binding of ligand-decorated nanoparticles to cell membrane driven by ligand-cell-receptor attraction

  5. CompuCell3D Vascular Tumor

    16 Apr 2019 | | Contributor(s):: Juliano Ferrari Gianlupi, Somogyi, Andy T

    Simulate 3D vascular tumor with CompuCell3D

  6. PhysiCell: biased random migration demonstrator

    22 Feb 2019 | | Contributor(s):: Paul Macklin, Randy Heiland

    PhysiCell demonstration of biased random cell migration

  7. PhysiCell for tumor heterogeneity

    12 Feb 2019 | | Contributor(s):: Randy Heiland, Paul Macklin

    2D simulation of tumor heterogeneity

  8. PhysiCell: invader-scout-attacker system

    05 Feb 2019 | | Contributor(s):: Paul Macklin, Randy Heiland

    PhysiCell model of an invader-scout-attacker multicellular system

  9. PhysiCell cancer biorobots simulation

    28 Jan 2019 | | Contributor(s):: Randy Heiland, Paul Macklin

    2D simulation of biorobots delivering a drug to cancer cells

  10. Nanoparticle Assembly Lab

    28 Jan 2019 | | Contributor(s):: Nicholas Brunk, JCS Kadupitiya, Masaki Uchida, Douglas, Trevor, Vikram Jadhao

    Simulate assembly of nanoparticles into aggregates in physiological conditions.

  11. Nanosphere Electrostatics Lab

    22 May 2018 | | Contributor(s):: JCS Kadupitiya, Nicholas Brunk, Sohile Ali, Fox, Geoffrey C., Vikram Jadhao

    The Nanosphere Electrostatics Lab empowers users to simulate the self-assembly of ions near a spherically shaped nanoparticle, and extract the effective electrostatic properties.

  12. pc4nanobio: cancer nanotherapy simulator

    19 Apr 2018 | | Contributor(s):: Randy Heiland, Paul Macklin

    Simulate cancer response to shape-changing nanoparticles conjugated to novel therapeutics

  13. The Effective Fragment Potential Method Calculation Tool

    07 Jun 2017 | | Contributor(s):: Lyudmila V. Slipchenko, Pradeep Kumar Gurunathan, Hanjing Xu

    LIBEFP facilitates extension of unique electronic structure methodologies designed for accurate simulations in the gas phase to condensed phases via QM/EFP. This tool provides a easy-to-use GUI for input generation and output visualization.

  14. Ions in Nanoconfinement

    06 Dec 2017 | | Contributor(s):: Kadupitige Kadupitiya, Nasim Anousheh, Suresh Marru, Fox, Geoffrey C., Vikram Jadhao

    The Ions in Nanoconfinement app empowers users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.

  15. Atomistic Polymer Workflow Notebook

    19 Oct 2017 | | Contributor(s):: Benjamin P Haley

    Run PolymerModeler and nuSIMM tools to create atomistic polymer systems

  16. Mechanics of Crystalline Nano Cellulose Nanofilm

    06 Jul 2017 | | Contributor(s):: Joshua Leonardo, Mehdi Shishehbor, Pablo Daniel Zavattieri

    Simulation of tensile tests on your own Crystalline Nano Cellulose structures.

  17. Glass transition temperature notebook

    22 May 2017 | | Contributor(s):: Benjamin P Haley, Lorena Alzate-Vargas

    Calculate the glass transition temperature of an atomistic, amorphous system by running MD simulations in a notebook

  18. DNA Origami Visualization Tools

    12 Sep 2016 | | Contributor(s):: Jessica Nash

    Visualize DNA origami designs

  19. Atomic Resolution Brownian Dynamics

    09 Nov 2016 | | Contributor(s):: Chris Maffeo

    GPU-accelerated Brownian dynamics simulation tool for biomolecular and nanotechnological systems

  20. Coarse Graining of Crystalline Cellulose

    29 Jul 2016 | | Contributor(s):: Kuo Tian, Mehdi Shishehbor, Pablo Daniel Zavattieri

    Bio-inspired Crystalline Nano-Cellulose coarse graining toolkit