Tags: nano/bio

Tools (1-20 of 83)

  1. Ions in Nanoconfinement

    22 Dec 2017 | Contributor(s):: Kadupitige Kadupitiya, Suresh Marru, Fox, Geoffrey C., Vikram Jadhao

    The Ions in Nanoconfinement app empowers users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.

  2. Atomistic Polymer Workflow Notebook

    19 Oct 2017 | Contributor(s):: Benjamin P Haley

    Run PolymerModeler and nuSIMM tools to create atomistic polymer systems

  3. Mechanics of Crystalline Nano Cellulose Nanofilm

    06 Jul 2017 | | Contributor(s):: Joshua Leonardo, Mehdi Shishehbor, Pablo Daniel Zavattieri

    Simulation of tensile tests on your own Crystalline Nano Cellulose structures.

  4. Glass transition temperature notebook

    22 May 2017 | | Contributor(s):: Benjamin P Haley, Lorena Alzate-Vargas

    Calculate the glass transition temperature of an atomistic, amorphous system by running MD simulations in a notebook

  5. DNA Origami Visualization Tools

    12 Sep 2016 | | Contributor(s):: Jessica Nash

    Visualize DNA origami designs

  6. Atomic Resolution Brownian Dynamics

    09 Nov 2016 | | Contributor(s):: Chris Maffeo

    GPU-accelerated Brownian dynamics simulation tool for biomolecular and nanotechnological systems

  7. Coarse Graining of Crystalline Cellulose

    29 Jul 2016 | | Contributor(s):: Kuo Tian, Mehdi Shishehbor, Pablo Daniel Zavattieri

    Bio-inspired Crystalline Nano-Cellulose coarse graining toolkit

  8. ENBIOS-2D Lab

    18 Jul 2016 | | Contributor(s):: Aldi Hoxha, Paolo Scarbolo, Andrea Cossettini, Federico Pittino, Luca Selmi

    A tool to simulate Ion Sensitive Field Effect Transistors in two dimensions

  9. ENBIOS-1D Lab

    14 Dec 2015 | | Contributor(s):: Paolo Scarbolo, Federico Pittino, Matteo , Andrea Cossettini, Luca Selmi

    A tool to simulate Electrolyte/Insulator/Semiconductor systems in one dimension

  10. LegoGen

    05 Feb 2016 | | Contributor(s):: Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev

    Tool workflow for building DNA Brick structures automatically.

  11. Molecular Dynamics Showcase Builder

    09 Nov 2015 | | Contributor(s):: Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li

    Tool to create showcases for the Molecular Dynamics Showcase viewer.

  12. A computational method for rapid prediction of amyloid beta-fibril structures

    23 Mar 2015 | | Contributor(s):: Hamed Tabatabaei Ghomi, Markus A. Lill

    A computational method for rapid prediction of amyloid beta-fibril structures

  13. Granular Crystals

    22 Jul 2015 | | Contributor(s):: Juan Camilo Lopez, Rohit Kaushal Tripathy, Ilias Bilionis, Marcial Gonzalez

    Allows the user to sample properties of granular chains under uncertainty propagation

  14. Gaussian processes 2D

    26 Jun 2015 | | Contributor(s):: Ilias Bilionis, Yinuo Li, Juan Camilo Lopez

    Gaussian Process 2D Sampling

  15. Gaussian processes 1D

    10 Jun 2015 | | Contributor(s):: Ilias Bilionis, Juan Camilo Lopez, Yinuo Li

    Allows the user to sample functions from a Gaussian process.

  16. Traction Force Microscopy

    17 Apr 2014 | | Contributor(s):: Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

    This is a tool for particle motion tracking with respect to physical forces.

  17. Nanoindentation of Soft Elastic Materials

    04 Jan 2015 | | Contributor(s):: Taha Goudarzi

    Estimates Young's Modulus of a soft material from its force-displacement data of nanoindentaton test.

  18. Nanoindentation of soft viscoelastic materials

    04 Jan 2015 | | Contributor(s):: Taha Goudarzi

    Finds viscoelastic parameters of Standard Linear Solid models from experimental data

  19. nanoDDSCAT+

    13 Aug 2014 | | Contributor(s):: AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain

    Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

  20. IMOD online

    09 Jun 2014 | | Contributor(s):: Mingxuan Lu, Chang Wan Han, Benjamin P Haley, Volkan Ortalan

    Online IMOD tool for electron tomography