Tags: nano/bio

Tools (1-20 of 77)

  1. A computational method for rapid prediction of amyloid beta-fibril structures

    27 Aug 2015 | Tools | Contributor(s): Hamed Tabatabaei Ghomi, Markus A. Lill

    A computational method for rapid prediction of amyloid beta-fibril structures


  2. Accurate Chemical Master Equation (ACME)

    20 Jun 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang

    Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in...


  3. Bimodal Polymer Nano Brush

    08 Aug 2011 | Tools | Contributor(s): Rikkert Jan Nap, Fritzlaine Roche, Marcelo Carignano

    Structure and Thermodynamics of Bimodal Polymer Nano Brushes


  4. Bio Composite Simulator

    26 Oct 2011 | Tools | Contributor(s): Sebastian Lee, Pablo Daniel Zavattieri, Alejandro Strachan

    Simulation mechanical response of bio composites using rigid particles


  5. biomoca

    14 Mar 2008 | Tools | Contributor(s): Reza Toghraee, Umberto Ravaioli

    Ion channel simulator


  6. BioMOCA Suite

    14 Feb 2008 | Tools | Contributor(s): David Papke, Reza Toghraee, Umberto Ravaioli, Ankit Raj

    Simulates ion flow through a channel.


  7. BioSensorLab

    28 Mar 2008 | Tools | Contributor(s): Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain

    BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.


  8. cadnano to PDB File Converter

    13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.


  9. Coarse Graining of Crystalline Cellulose

    24 Oct 2016 | Tools | Contributor(s): Kuo Tian, Mehdi Shishehbor, Pablo Daniel Zavattieri

    Bio-inspired Crystalline Nano-Cellulose coarse graining toolkit


  10. Crystalline Cellulose - Atomistic Toolkit

    05 Aug 2013 | Tools | Contributor(s): Mateo Gómez Zuluaga, Robert J. Moon, Fernando Luis Dri, Pablo Daniel Zavattieri

    Crystalline Cellulose - Atomistic Toolkit


  11. Cyber-Infrastructure for Imaging and Simulation of Molecular and Cellular Mechanics (CISMCM)

    21 Dec 2009 | Tools | Contributor(s): Raheem Syed, Umberto Ravaioli, Gabriel Popescu, Nahil Sobh

    Simulation-Driven Science Project


  12. ENBIOS-1D Lab

    29 Apr 2016 | Tools | Contributor(s): Federico Pittino, Paolo Scarbolo, Matteo , Andrea Cossettini, Luca Selmi

    A tool to simulate Electrolyte/Insulator/Semiconductor systems in one dimension


  13. ENBIOS-2D Lab

    10 Oct 2016 | Tools | Contributor(s): Aldi Hoxha, Paolo Scarbolo, Andrea Cossettini, Federico Pittino, Luca Selmi

    A tool to simulate Ion Sensitive Field Effect Transistors in two dimensions


  14. Exciton Dynamics Lab for Light-Harvesting Complexes (GPU-HEOM)

    28 Feb 2013 | Tools | Contributor(s): Christoph Kreisbeck, Tobias Kramer

    Non-Markovian calculation of absorption spectra, 2d echo-spectra, coherences and polulation dynamics for light-harvesting complexes.


  15. Forced Protein Unfolding

    08 Jul 2009 | Tools | Contributor(s): Ashlie Martini, Benjamin Rafferty, Zachary Carl Flohr

    Molecular dynamics simulation of forced protein unfolding


  16. Functionalization Workbench

    13 Jan 2014 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.


  17. Gaussian processes 1D

    22 Jul 2015 | Tools | Contributor(s): Ilias Bilionis, Juan Camilo Lopez, Yinuo Li

    Allows the user to sample functions from a Gaussian process.


  18. Gaussian processes 2D

    03 Aug 2015 | Tools | Contributor(s): Ilias Bilionis, Yinuo Li, Juan Camilo Lopez

    Gaussian Process 2D Sampling


  19. Granular Crystals

    06 Aug 2015 | Tools | Contributor(s): Juan Camilo Lopez, Rohit Kaushal Tripathy, Ilias Bilionis, Marcial Gonzalez

    Allows the user to sample properties of granular chains under uncertainty propagation


  20. Hydrodynamic Particle Trapping

    26 Jun 2013 | Tools | Contributor(s): Melikhan tanyerim@illinois.edu Tanyeri, John Feser, Nahil Sobh

    Simulates the motion of a nanoparticle in a hydrodynamic trap.