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A computational method for rapid prediction of amyloid beta-fibril structures
0.0 out of 5 stars
27 Aug 2015 | Tools | Contributor(s): Hamed Tabatabaei Ghomi, Markus A. Lill
Bimodal Polymer Nano Brush
08 Aug 2011 | Tools | Contributor(s): Rikkert Jan Nap, Fritzlaine Roche, Marcelo Carignano
Structure and Thermodynamics of Bimodal Polymer Nano Brushes
Bio Composite Simulator
5.0 out of 5 stars
26 Oct 2011 | Tools | Contributor(s): Sebastian Lee, Pablo Daniel Zavattieri, Alejandro Strachan
Simulation mechanical response of bio composites using rigid particles
4.5 out of 5 stars
14 Mar 2008 | Tools | Contributor(s): Reza Toghraee, Umberto Ravaioli
Ion channel simulator
4.0 out of 5 stars
14 Feb 2008 | Tools | Contributor(s): David Papke, Reza Toghraee, Umberto Ravaioli, Ankit Raj
Simulates ion flow through a channel.
28 Mar 2008 | Tools | Contributor(s): Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain
BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.
cadnano to PDB File Converter
3.0 out of 5 stars
13 Jan 2014 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev
Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.
Crystalline Cellulose - Atomistic Toolkit
05 Aug 2013 | Tools | Contributor(s): Mateo Gómez Zuluaga, Robert J. Moon, Fernando Luis Dri, Pablo Daniel Zavattieri
Cyber-Infrastructure for Imaging and Simulation of Molecular and Cellular Mechanics (CISMCM)
21 Dec 2009 | Tools | Contributor(s): Raheem Syed, Umberto Ravaioli, Gabriel Popescu, Nahil Sobh
Simulation-Driven Science Project
29 Apr 2016 | Tools | Contributor(s): Federico Pittino, Paolo Scarbolo, Matteo , Andrea Cossettini, Luca Selmi
A tool to simulate Electrolyte/Insulator/Semiconductor systems in one dimension
Exciton Dynamics Lab for Light-Harvesting Complexes (GPU-HEOM)
28 Feb 2013 | Tools | Contributor(s): Christoph Kreisbeck, Tobias Kramer
Non-Markovian calculation of absorption spectra, 2d echo-spectra, coherences and polulation dynamics for light-harvesting complexes.
Finite Buffer dCME (fb-dCME)
20 Jun 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Jie Liang, Nahil Sobh
Finite Buffer Method for Direct Solution of Discrete Chemical Master Equation (fb-dCME)
Forced Protein Unfolding
08 Jul 2009 | Tools | Contributor(s): Ashlie Martini, Benjamin Rafferty, Zachary Carl Flohr
Molecular dynamics simulation of forced protein unfolding
13 Jan 2014 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li
Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.
Gaussian processes 1D
22 Jul 2015 | Tools | Contributor(s): Ilias Bilionis, Juan Camilo Lopez, Yinuo Li
Allows the user to sample functions from a Gaussian process.
Gaussian processes 2D
03 Aug 2015 | Tools | Contributor(s): Ilias Bilionis, Yinuo Li, Juan Camilo Lopez
Gaussian Process 2D Sampling
06 Aug 2015 | Tools | Contributor(s): Juan Camilo Lopez, Rohit Kaushal Tripathy, Ilias Bilionis, Marcial Gonzalez
Allows the user to sample properties of granular chains under uncertainty propagation
Hydrodynamic Particle Trapping
26 Jun 2013 | Tools | Contributor(s): Melikhan firstname.lastname@example.org Tanyeri, John Feser, Nahil Sobh
Simulates the motion of a nanoparticle in a hydrodynamic trap.
29 Jan 2007 | Tools | Contributor(s): Eric F Darve, Artit Wangperawong, Kazutora Hayashida
Study hydrophobicity and how Lennard Jones particles cluster in a polar solvent
Illinois Tool: FIONA (Fluorescence Imaging with One Nanometer Accuracy)
13 Dec 2010 | Tools | Contributor(s): Paul R Selvin, Raheem Syed, Nahil Sobh
Fluorescence Imaging with One Nanometer Accuracy