Support Options

Submit a Support Ticket


Tags: nano/bio

Tools (1-20 of 72)

  1. A computational method for rapid prediction of amyloid beta-fibril structures

    23 Mar 2015 | Tools | Contributor(s): Hamed Tabatabaei Ghomi, Markus A. Lill

    A computational method for rapid prediction of amyloid beta-fibril structures

  2. Bimodal Polymer Nano Brush

    12 Jul 2011 | Tools | Contributor(s): Rikkert Jan Nap, Fritzlaine Roche, Marcelo Carignano

    Structure and Thermodynamics of Bimodal Polymer Nano Brushes

  3. Bio Composite Simulator

    13 Oct 2011 | Tools | Contributor(s): Sebastian Lee, Pablo Daniel Zavattieri, Alejandro Strachan

    Simulation mechanical response of bio composites using rigid particles

  4. biomoca

    30 May 2006 | Tools | Contributor(s): Reza Toghraee, Umberto Ravaioli

    Ion channel simulator

  5. BioMOCA Suite

    04 Feb 2008 | Tools | Contributor(s): David Papke, Reza Toghraee, Umberto Ravaioli, Ankit Raj

    Simulates ion flow through a channel.

  6. BioSensorLab

    14 Aug 2006 | Tools | Contributor(s): Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain

    BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.

  7. cadnano to PDB File Converter

    13 Nov 2013 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

  8. Crystalline Cellulose - Atomistic Toolkit

    17 Jul 2013 | Tools | Contributor(s): Mateo Gómez Zuluaga, Robert J. Moon, Fernando Luis Dri, Pablo Daniel Zavattieri

    Crystalline Cellulose - Atomistic Toolkit

  9. Cyber-Infrastructure for Imaging and Simulation of Molecular and Cellular Mechanics (CISMCM)

    27 Oct 2009 | Tools | Contributor(s): Raheem Syed, Umberto Ravaioli, Gabriel Popescu, Nahil Sobh

    Simulation-Driven Science Project

  10. Exciton Dynamics Lab for Light-Harvesting Complexes (GPU-HEOM)

    18 Dec 2012 | Tools | Contributor(s): Christoph Kreisbeck, Tobias Kramer

    Non-Markovian calculation of absorption spectra, 2d echo-spectra, coherences and polulation dynamics for light-harvesting complexes.

  11. Finite Buffer dCME (fb-dCME)

    20 May 2013 | Tools | Contributor(s): Youfang Cao, Anna Terebus, John Feser, Jie Liang, Nahil Sobh

    Finite Buffer Method for Direct Solution of Discrete Chemical Master Equation (fb-dCME)

  12. Forced Protein Unfolding

    01 Jun 2009 | Tools | Contributor(s): Ashlie Martini, Benjamin Rafferty, Zachary Carl Flohr

    Molecular dynamics simulation of forced protein unfolding

  13. Functionalization Workbench

    30 Aug 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jasper Taylor Maniates-Selvin, Kaustubh Bhalerao, Adri van Duin, Chen-Yu Li

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

  14. Gaussian processes 1D

    10 Jun 2015 | Tools | Contributor(s): Ilias Bilionis, Juan Camilo Lopez, Yinuo Li

    Allows the user to sample functions from a Gaussian process.

  15. Gaussian processes 2D

    26 Jun 2015 | Tools | Contributor(s): Ilias Bilionis, Yinuo Li, Juan Camilo Lopez

    Gaussian Process 2D Sampling

  16. Granular Crystals

    22 Jul 2015 | Tools | Contributor(s): Juan Camilo Lopez, Rohit Kaushal Tripathy, Ilias Bilionis, Marcial Gonzalez

    Allows the user to sample properties of granular chains under uncertainty propagation

  17. Hydrodynamic Particle Trapping

    14 Jun 2013 | Tools | Contributor(s): Melikhan Tanyeri, John Feser, Nahil Sobh

    Simulates the motion of a nanoparticle in a hydrodynamic trap.

  18. Hydrophobicity Lab

    24 Jul 2006 | Tools | Contributor(s): Eric F Darve, Artit Wangperawong, Kazutora Hayashida

    Study hydrophobicity and how Lennard Jones particles cluster in a polar solvent

  19. Illinois Tool: FIONA (Fluorescence Imaging with One Nanometer Accuracy)

    01 Nov 2010 | Tools | Contributor(s): Paul R Selvin, Raheem Syed, Nahil Sobh

    Fluorescence Imaging with One Nanometer Accuracy

  20. Illinois Tools: NanoGromacsDemo

    30 Oct 2006 | Tools | Contributor(s): Dairui Chen, Derrick Kearney, Jay Mashl, Nahil Sobh, Eric Jakobsson

    Implementation of the popular molecular dynamics software suite GROMACS, a resource for nanoscience and nanotechnology, is supported by the National Science Foundation and other funding agencies. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.