Tags: nano/bio

Tools (1-20 of 86)

  1. A computational method for rapid prediction of amyloid beta-fibril structures

    23 Mar 2015 | | Contributor(s):: Hamed Tabatabaei Ghomi, Markus A. Lill

    A computational method for rapid prediction of amyloid beta-fibril structures

  2. Accurate Chemical Master Equation (ACME)

    20 May 2013 | | Contributor(s):: Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang

    Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in biological networks.

  3. Atomic Resolution Brownian Dynamics

    09 Nov 2016 | | Contributor(s):: Chris Maffeo

    GPU-accelerated Brownian dynamics simulation tool for biomolecular and nanotechnological systems

  4. Atomistic Polymer Workflow Notebook

    19 Oct 2017 | | Contributor(s):: Benjamin P Haley

    Run PolymerModeler and nuSIMM tools to create atomistic polymer systems

  5. Bimodal Polymer Nano Brush

    12 Jul 2011 | | Contributor(s):: Rikkert Jan Nap, Fritzlaine Roche, Marcelo Carignano

    Structure and Thermodynamics of Bimodal Polymer Nano Brushes

  6. Bio Composite Simulator

    13 Oct 2011 | | Contributor(s):: Sebastian Lee, Pablo Daniel Zavattieri, Alejandro Strachan

    Simulation mechanical response of bio composites using rigid particles

  7. biomoca

    30 May 2006 | | Contributor(s):: Reza Toghraee, Umberto Ravaioli

    Ion channel simulator

  8. BioMOCA Suite

    04 Feb 2008 | | Contributor(s):: David Papke, Reza Toghraee, Umberto Ravaioli, Ankit Raj

    Simulates ion flow through a channel.

  9. BioSensorLab

    14 Aug 2006 | | Contributor(s):: Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain, Mohammad Ryyan Khan, Mohammad Ryyan Khan

    BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.

  10. cadnano to PDB File Converter

    13 Nov 2013 | | Contributor(s):: Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

  11. Coarse Graining of Crystalline Cellulose

    29 Jul 2016 | | Contributor(s):: Kuo Tian, Mehdi Shishehbor, Pablo Daniel Zavattieri

    Bio-inspired Crystalline Nano-Cellulose coarse graining toolkit

  12. Crystalline Cellulose - Atomistic Toolkit

    17 Jul 2013 | | Contributor(s):: Mateo Gómez Zuluaga, Robert J. Moon, Fernando Luis Dri, Pablo Daniel Zavattieri

    Crystalline Cellulose - Atomistic Toolkit

  13. Cyber-Infrastructure for Imaging and Simulation of Molecular and Cellular Mechanics (CISMCM)

    27 Oct 2009 | | Contributor(s):: Raheem Syed, Umberto Ravaioli, Gabriel Popescu, Nahil Sobh

    Simulation-Driven Science Project

  14. DNA Origami Visualization Tools

    12 Sep 2016 | | Contributor(s):: Jessica Nash

    Visualize DNA origami designs

  15. ENBIOS-1D Lab

    14 Dec 2015 | | Contributor(s):: Paolo Scarbolo, Federico Pittino, Matteo , Andrea Cossettini, Luca Selmi

    A tool to simulate Electrolyte/Insulator/Semiconductor systems in one dimension

  16. ENBIOS-2D Lab

    18 Jul 2016 | | Contributor(s):: Aldi Hoxha, Paolo Scarbolo, Andrea Cossettini, Federico Pittino, Luca Selmi

    A tool to simulate Ion Sensitive Field Effect Transistors in two dimensions

  17. Exciton Dynamics Lab for Light-Harvesting Complexes (GPU-HEOM)

    18 Dec 2012 | | Contributor(s):: Christoph Kreisbeck, Tobias Kramer

    Non-Markovian calculation of absorption spectra, 2d echo-spectra, coherences and polulation dynamics for light-harvesting complexes.

  18. Forced Protein Unfolding

    01 Jun 2009 | | Contributor(s):: Ashlie Martini, Benjamin Rafferty, Zachary Carl Flohr

    Molecular dynamics simulation of forced protein unfolding

  19. Functionalization Workbench

    30 Aug 2013 | | Contributor(s):: AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

  20. Gaussian processes 1D

    10 Jun 2015 | | Contributor(s):: Ilias Bilionis, Juan Camilo Lopez, Yinuo Li

    Allows the user to sample functions from a Gaussian process.