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Illinois Tools: NanoGromacs_Intro
07 May 2008 | | Contributor(s):: Dairui Chen, Jay Mashl, Nahil Sobh, Eric Jakobsson
Implementation of the popular molecular dynamics software suite GROMACS
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Lecture 24: The 4 Molecules of life
29 Apr 2008 | | Contributor(s):: Paul R Selvin
Atoms, Molecules, Macromolecules, you!Amino Acids, Sugars used as signals, Fatty Acids/Lipids
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Molecular modeling of lipid bilayer edge and hybrid-MCMD method: Implementation and application
29 Apr 2008 | | Contributor(s):: Yong Jiang
Introduction to mixed lipid systems, Hybrid Monte Carlo and MD (atomistic) algorithm for mixed lipid systems
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Lecture 18: Magnetotaxis
28 Apr 2008 | | Contributor(s):: Klaus Schulten, Paul R Selvin
Biochemical Mechanisms for Magnetic Orientation in Animals, guest lecture Klaus Schulten.
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Lecture 2: Central Dogma of Biology; Partition Function
28 Apr 2008 | | Contributor(s):: Paul R Selvin
Nucleic Acids, DNA,RNA, Cell size, Nucleotides, Boltzman factor, Partition function
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Lecture 1: Introduction to Biophysics
28 Apr 2008 | | Contributor(s):: Paul R Selvin
Understanding biology using simple ideas from physics
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Lecture 23: Vision
26 Apr 2008 | | Contributor(s):: Paul R Selvin
Summary of Ion Channels, Vision , Visual System, The Eye, Structure of the Eye, Signal Processing, Diffraction and Pupil
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Lecture 21: Nerves
24 Apr 2008 | | Contributor(s):: Paul R Selvin
Ion Channels,Ionic current, Gating current, Digital Ion Channels, Structural studies, X-ray Crystallography
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Lecture 22: Conformational Changes in Ion Channels
24 Apr 2008 | | Contributor(s):: Paul R Selvin
Voltage dependence, Spontaneous shut-off, Nerve Impulse propagation, Structure Pore Domain, Voltage Sensor
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Functionalized Nanomaterials at the Interface of Biology and Technology
24 Apr 2008 | | Contributor(s):: Dean Ho, National Center for Learning & Teaching in Nanoscale Science & Engineering
Nanomaterials, such as block copolymeric membranes and nanodiamonds, can be engineered for a broad range of applications in energy and medicine. This presentation will highlight the relevance of these materials as foundations for device fabrication across the spectrum of biology and technology....
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Lecture 19: Optical Traps - Part2
23 Apr 2008 | | Contributor(s):: Paul R Selvin
Biological application of optical traps, High resolution optical trapping, Brownian noise
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Practical Introduction to the BioMOCA Suite
23 Apr 2008 | | Contributor(s):: David Papke
In this presentation, I describe how to use the online BioMOCA Suite. I explain how to prepare the .pqr input protein structure from a .pdb structure. I then explain in detail how to use each of the four subtools in the BioMOCA Suite.I do not cover in detail how the BioMOCA code works. If you are...
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Lecture 16: Optical Traps - Part 1
16 Apr 2008 | | Contributor(s):: Paul R Selvin
First Optical Trap built, Reflection, Refraction, Brownian motionYann Chemla - Assistant Professor of Physics - University of Illinois at Champaign-Urbana
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Lecture 11: FIONA (Fluorescence Imaging with One Nanometer Accuracy)
11 Apr 2008 | | Contributor(s):: Paul R Selvin
Fluorescence Imaging with One Nanometer Accuracy, Specificity to look at heads Nanometer spatial localization, Second temporal resolution, Single Molecule sensitivity Single Molecule Photostability
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Lecture 12: Ultra-Resolution
11 Apr 2008 | | Contributor(s):: Paul R Selvin
SHREC (Single molecule High Resolution Co localization), SHRIMP (Super-High Resolution Imaging with Photobleaching), DOPI (Defocused Orientation Position Imaging), PALM (PhotoActivated Localization Microscopy), Enhancing Resolution
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Lecture 13: Enhancing Resolution - FIONA - SHREC - DOPI - PALM - STORM
15 Apr 2008 | | Contributor(s):: Paul R Selvin
Current Methods of obtaining higher resolution using: FIONA : Flouresence Imaging with One Nanometer Accuracy SHREC : Single molecule High Resolution Co-localization DOPI : Defocused Orientation Position Imaging
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Lecture 14: FRET and Helicase Activity
15 Apr 2008 | | Contributor(s):: Paul R Selvin
FRET: measuring conformational changes of (single) biomolecules, Unzipping mystery of helicases
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P-N Semiconductor Membranes for Ion Filtering and Rectification
06 Apr 2008 | | Contributor(s):: J. P. Leburton
Jean-Pierre Leburton's research at the Beckman Institute deals with transport and optical processes in semiconductor nanostructures such as quantum wires and quantum dots that exhibit a high degree of quantization dependent on the semiconductor materials and geometrical confinement. This...
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Lecture 5: Magnetic Traps & DNA
07 Apr 2008 | | Contributor(s):: Paul R Selvin
Introduction I
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Lecture 6: Magnetic Tweezers
07 Apr 2008 | | Contributor(s):: Paul R Selvin
Introduction II and Applications