Tags: NanoBio Node

Tools (1-20 of 28)

  1. LegoGen

    05 Feb 2016 | | Contributor(s):: Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev

    Tool workflow for building DNA Brick structures automatically.

  2. Molecular Dynamics Showcase Builder

    09 Nov 2015 | | Contributor(s):: Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li

    Tool to create showcases for the Molecular Dynamics Showcase viewer.

  3. Traction Force Microscopy

    17 Apr 2014 | | Contributor(s):: Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

    This is a tool for particle motion tracking with respect to physical forces.

  4. nanoDDSCAT+

    13 Aug 2014 | | Contributor(s):: AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain

    Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

  5. Nanoindentation

    28 Oct 2013 | | Contributor(s):: Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk

    Nanoindentation for Mechanical Characterization of Soft Materials

  6. nanoDDSCAT

    23 Apr 2013 | | Contributor(s):: Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

    Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

  7. cadnano to PDB File Converter

    13 Nov 2013 | | Contributor(s):: Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

    Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

  8. Molecular Dynamics Showcase

    06 Jul 2013 | | Contributor(s):: Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev, George A. Howlett

    View interesting features of a molecular dynamics trajectory file

  9. [Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights

    07 Jul 2013 | | Contributor(s):: AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.

  10. [Illinois]: Perturbative Reinforcement Learning to Develop Distributed Representations

    10 Jul 2013 | | Contributor(s):: AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains three-layered networks of sigmoidal units to associate patterns.

  11. [Illinois]: Perturbative Reinforcement Learning Using Directed Drift

    10 Jul 2013 | | Contributor(s):: AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using a real-valued adaptation of the directed drift algorithm.

  12. [Illinois]: Temporal Difference, Iterative Dynamic Programming, and Least Mean Squares

    11 Jul 2013 | | Contributor(s):: Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson

    This tool updates state values using the Temporal Difference Algorithm.

  13. [Illinois]: Direction Selectivity

    13 Jul 2013 | | Contributor(s):: Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool implements a simple direction selective network.

  14. [Illinois]: Predict Correct Set Up

    15 Jul 2013 | | Contributor(s):: Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool sets up a predictor-corrector model of target tracking

  15. [Illiniois]: SynchUp

    16 Jul 2013 | | Contributor(s):: Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool computes synchronous updates of autoassociative networks.

  16. [Illinois]: AsynchUp

    16 Jul 2013 | | Contributor(s):: Bara Saadah, Nahil Sobh, AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This tool computes asynchronous updates of autoassociative networks.

  17. [Illinois] KohonenSOM

    09 Jul 2013 | | Contributor(s):: Bara Saadah, Nahil Sobh, Jessica S Johnson, NanoBio Node

    This tool implements the Kohonen self-organizing map (SOM) algorithm

  18. [Illinois]: BUTDprobInference

    17 Jul 2013 | | Contributor(s):: Bara Saadah, Jessica S Johnson, NanoBio Node

    This tool stimulates bottom-up/top-down processing in the visual system using probabilistic inference.

  19. [Illinois]: BUTDjointDistribution

    16 Jul 2013 | | Contributor(s):: Bara Saadah, Jessica S Johnson, NanoBio Node

    this tool simulates bottom-up/top-down processing in the visual system using the joint distribution

  20. [Illinois]: Error Gradient Estimations Due to Perturbation of One Weight at a Time

    29 Jun 2013 | | Contributor(s):: AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using perturbation of one weight at a time.