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Simulators can produce all sorts of numbers, but the numbers themselves aren't terribly meaningful until they are put into context by visualization techniques. For example, the coordinates of the various atoms in a molecule don't readily convey the shape of the molecule, but once those coordinates are loaded into VMD, the the resulting picture conveys not only the shape of the molecule, but other important properties as well.
Learn more about visualization techniques from the resources on this site, listed below.
What is the tool you used for that visualization box?
Closed | Responses: 3
AIDA: A tool for exhaustive enumeration of solutions to the quantized Frank-Bilby equation
08 Jan 2018 | | Contributor(s):: Ali Sangghaleh, Michael J. Demkowicz
We present a tool called Arrangement of Interface Dislocation Arrays (AIDA) for enumerating all dislocation networks that satisfy the quantized Frank-Bilby equation for any interface between cubic crystals with a single-atom basis, i.e. FCC/FCC, BCC/BCC, and FCC/BCC interfaces. The set of...
High-Resolution, High-Speed 3D Imaging and Applications
20 Jul 2017 | | Contributor(s):: Song Zhang
Engr. Nayab Bukhari Syed
MD Showcase: Epoxy uniaxial tension
31 Oct 2016 |
Posted by Lorena Alzate-Vargas
Introduction to Visualization
19 Oct 2016 | | Contributor(s):: Vetria L. Byrd
Exploring Materials Properties with Nanomaterial Mechanics Explorer Structure Files
24 Mar 2016 | | Contributor(s):: Tanya Faltens
This document describes how to generate and download simulation output files from the Nanomaterial Mechanics Explorer on nanoHUB and view them locally using OVITO.This can be particularly useful for more advanced manipulations of the trajectory files, and for sharing files with others, such...
axes label and the zero point
Closed | Responses: 2
It would be helpful to position the axes labels at the end of the each axis. The current display is not clear.
Also the zero point is printed as a small number in scientific notation...
[Illinois] Introduction to Cell Visualization
14 Jun 2013 | | Contributor(s):: Emad Tajkhorshid
Professor Emad Tajkhorshid speaks to University Laboratory High School students about his research in Computational Studies of Membranes and Membrane Associated PhenomenaMembrane proteins are of critical importance for all living cells. They are responsible for exchange of materials and...
Rappture Bootcamp 2.5: Advanced Visualization
16 Jul 2012 | | Contributor(s):: Michael McLennan
Computer Graphics Imagery for Motion Pictures and Commercial Advertising: The Achievement of Highly-Realistic Images
19 Aug 2011 | | Contributor(s):: Kenneth Torrance
The talk will review some of the underlying concepts from Radiation Heat Transfer that have now been implemented in synthetic images. In many cases, researchers in graphics have created algorithms that are many times faster and more detailed than the engineering algorithms from which they were...
Embedding visualization software into a tool in Rappture
Closed | Responses: 0
Is it possible to embed a third-party software GUI into one of my tool’s outputs through Rappture so that the user may use the visualization options available...
Electron Density in a Nanowire
30 Jan 2011 | | Contributor(s):: Gerhard Klimeck, Saumitra Raj Mehrotra
Electron Density in a circular Silicon nanowire transistor.
Tunneling in an Nanometer-Scaled Transistor
25 Jan 2011 | | Contributor(s):: Gerhard Klimeck, Mathieu Luisier, Neerav Kharche, George A. Howlett, Insoo Woo, David Ebert
Electrons tunneling through the gate of an ultra-scaled transistor.
out of 5 stars
25 May 2008 | | Contributor(s):: Masahiko Suenaga
Facio is a 3D-graphics program for molecular modeling and visualization of quantum chemical calculations(GAMESS and Gaussian).It is a GUI for FMO (Fragment MO) calculation. Selected features include:(1) From a PDB file, create GAMESS/FMO input with 4 mouse clicks.(2) Manual fragmentation for the...
Northwestern University Initiative for Teaching Nanoscience
12 Aug 2008 | | Contributor(s):: Baudilio Tejerina
This package allows users to study and analyze of molecular properties using various electronic structure methods.