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Illinois Tools: NanoGromacs_Intro
Implementation of the popular molecular dynamics software suite GROMACS
Launch Tool
Archive Version 1.4.1
Published on 31 May 2011
Latest version: 1.4.1b. All versions
doi:10.4231/D39K45S6K cite this
This tool is closed source.
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Abstract
NanoGromacs is an interface for performing molecular dynamics (MD) simulations using Gromacs. Users can perform protein simulations by uploading their own structure file or running the 4 examples provided, and setting the run-time parameters. Snapshots of coordinates generated by the simulation can be visualized on the nanoHUB, and corresponding structure files can be downloaded and visualized locally, for example, with PyMOL. Several of the analysis programs from Gromacs are also provided.
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Gromacs
Credits
Biophysics & Computational Biology Group
University of Illinois at Urbana-Champaign
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