source: trunk/examples/3D/3d_test_run.xml @ 3719

Last change on this file since 3719 was 3719, checked in by ldelgass, 7 years ago

Update prophet 3D test to use unstructured mesh instead of deprecated cloud

File size: 40.8 KB
Line 
1<?xml version="1.0"?>
2<run>
3    <tool>
4        <title>
5    PROPHET
6  </title>
7        <about>
8    The PROPHET simulator is a framework to solve systems of partial differential equations (PDEs) in time and 1, 2, or 3 space dimensions. PDEs are discretized using either finite elements or finite volume methods in space and with implicit methods in time, which reduces the differential equations to a system of algebraic equations that are solved by Newton's method at each timestep. The matrix resulting from the linearization is solved by sparse iterative or direct methods.
9  </about>
10        <command>
11    @tool/prophetwr @driver
12  </command>
13        <layout>wizard</layout>
14    </tool>
15    <input>
16    </input>
17    <output>
18        <time>Tue Aug 30 15:50:39 EST 2005</time>
19        <log>
20using prophet.exe.linux
21
22PROPHET-SU 9910   30-Aug-2005 15:50:38    1011  round2.pu  13809
23
24  1 dbase prefix=library/physics/silicon/psi
25  2 dbase create name=dirichlet.anode rval=0.0
26  3 dbase create name=dirichlet.cathode rval=0.0
27  4 dbase prefix=""
28   
29  5 system name=my_poisson
30    + sysvars=psi
31    + term0=box_div.lapflux(psi|psi)@{silicon}
32    + term1=-1.6e-19*nodal.copy(netdope|psi)@{silicon}
33    + term2=dirichlet.default_dirichlet(0|psi)@{silicon/anode,silicon/cathode}
34   
35  6 grid xloc=0.000,2.000
36    +    xdel=0.0625
37    +    yloc=0.000,2.000
38    +    ydel=0.0625
39    +    dim=2
40   
41  7 boundary xmin=0 xmax=0 ymin=0 ymax=0.5 name=cathode
42  8 boundary xmin=0 xmax=0 ymin=1.5 ymax=2 name=anode
43   
44  9 field set=psubstrate val=-1e15
45 10 field set=ndiff val="6e15*gbox(X,0,1,0.0001)*gbox(Y,0,1,0.0001)"
46 11 field set=netdope val=psubstrate+ndiff
47   
48 12 field set=psi val=0
49   
50 13 solve system=my_poisson
51   
52 14 dbase prefix=library/physics/silicon/psi
53 15 dbase create name=scale rval=1.0
54 16 dbase create name=Dix rval=1.0448e-4
55 17 dbase create name=dirichlet.cathode rval=-1.0
56 18 dbase create name=dirichlet.anode rval=1.0
57 19 dbase prefix=""
58   
59 20 solve system=my_poisson
60   
61    # modified automatically for nanoHUB:
62    # graph quantity=psi contour color
63 21 dump solution outfile=dump13801-1.dmp
64   
65========================================================================
66Pass 2 begins, Elapsed cpu time:             0.06 sec
67========================================================================
68  1  dbase       cpu:      0.06 sec  0r  0i       0n       0e  [1848k]
69-----------------------------------------------------------------------
70  2  dbase       cpu:      0.06 sec  0r  0i       0n       0e  [1848k]
71-----------------------------------------------------------------------
72  3  dbase       cpu:      0.06 sec  0r  0i       0n       0e  [1848k]
73-----------------------------------------------------------------------
74  4  dbase       cpu:      0.06 sec  0r  0i       0n       0e  [1848k]
75-----------------------------------------------------------------------
76  5  system      cpu:      0.06 sec  0r  0i       0n       0e  [1848k]
77-----------------------------------------------------------------------
78Tensor_mesh: dim = 2
79Creating tensor mesh: 33 x 33  = 1089 nodes
80  6  grid        cpu:      0.09 sec  1r  3i    1089n    1024e  [2120k]
81-----------------------------------------------------------------------
82cathode: 8 elements matched by boundary specification
83  7  boundary    cpu:      0.10 sec  1r  4i    1089n    1024e  [2120k]
84-----------------------------------------------------------------------
85anode: 8 elements matched by boundary specification
86  8  boundary    cpu:      0.10 sec  1r  5i    1089n    1024e  [2120k]
87-----------------------------------------------------------------------
88  9  field       cpu:      0.11 sec  1r  5i    1089n    1024e  [2228k]
89-----------------------------------------------------------------------
90 10  field       cpu:      0.11 sec  1r  5i    1089n    1024e  [2228k]
91-----------------------------------------------------------------------
92 11  field       cpu:      0.11 sec  1r  5i    1089n    1024e  [2228k]
93-----------------------------------------------------------------------
94 12  field       cpu:      0.11 sec  1r  5i    1089n    1024e  [2228k]
95-----------------------------------------------------------------------
96Starting Newton iterations:
97  solving for: psi
98  (linear eq. solver: direct, package: petsc)
99  Newton iter 0                    174u     13.3n    0.133lg    0.133lr
100  Newton iter 1               8.57e-14u 2.67e-13n 2.67e-15lg 2.67e-15lr
101  Newton converged:     residual norm = 1.21e-13n, reduction = 9.07e-15
102                        cpu = 0.03 sec
103 13  solve       cpu:      0.18 sec  1r  5i    1089n    1024e  [2472k]
104-----------------------------------------------------------------------
105 14  dbase       cpu:      0.18 sec  1r  5i    1089n    1024e  [2472k]
106-----------------------------------------------------------------------
107 15  dbase       cpu:      0.18 sec  1r  5i    1089n    1024e  [2472k]
108-----------------------------------------------------------------------
109 16  dbase       cpu:      0.19 sec  1r  5i    1089n    1024e  [2472k]
110-----------------------------------------------------------------------
111 17  dbase       cpu:      0.19 sec  1r  5i    1089n    1024e  [2472k]
112-----------------------------------------------------------------------
113 18  dbase       cpu:      0.19 sec  1r  5i    1089n    1024e  [2472k]
114-----------------------------------------------------------------------
115 19  dbase       cpu:      0.19 sec  1r  5i    1089n    1024e  [2472k]
116-----------------------------------------------------------------------
117Starting Newton iterations:
118  solving for: psi
119  (linear eq. solver: direct, package: petsc)
120  Newton iter 0                  0.911u    0.955n  0.00955lg  0.00955lr
121  Newton iter 1               7.81e-16u 1.03e-15n 1.03e-17lg 1.03e-17lr
122  Newton converged:     residual norm = 6.31e-16n, reduction = 6.61e-16
123                        cpu = 0.02 sec
124 20  solve       cpu:      0.23 sec  1r  5i    1089n    1024e  [2472k]
125-----------------------------------------------------------------------
126 21  dump        cpu:      0.27 sec  1r  5i    1089n    1024e  [2472k]
127-----------------------------------------------------------------------</log>
128        <status>ok</status>
129        <mesh id="m0">
130            <about>
131                <label>Cloud Mesh</label>
132            </about>
133            <dim>3</dim>
134            <units>um</units>
135            <hide>yes</hide>
136            <unstructured>
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2325            </component>
2326        </field>
2327    </output>
2328</run>
2329
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