source: trunk/examples/3D/3d_test_run.xml @ 3719

Last change on this file since 3719 was 3719, checked in by ldelgass, 11 years ago

Update prophet 3D test to use unstructured mesh instead of deprecated cloud
File size: 40.8 KB
Line 
1<?xml version="1.0"?>
2<run>
3    <tool>
4        <title>
5    PROPHET
6  </title>
7        <about>
8    The PROPHET simulator is a framework to solve systems of partial differential equations (PDEs) in time and 1, 2, or 3 space dimensions. PDEs are discretized using either finite elements or finite volume methods in space and with implicit methods in time, which reduces the differential equations to a system of algebraic equations that are solved by Newton's method at each timestep. The matrix resulting from the linearization is solved by sparse iterative or direct methods.
9  </about>
10        <command>
11    @tool/prophetwr @driver
12  </command>
13        <layout>wizard</layout>
14    </tool>
15    <input>
16    </input>
17    <output>
18        <time>Tue Aug 30 15:50:39 EST 2005</time>
19        <log>
20using prophet.exe.linux
21
22PROPHET-SU 9910   30-Aug-2005 15:50:38    1011  round2.pu  13809
23
24  1 dbase prefix=library/physics/silicon/psi
25  2 dbase create name=dirichlet.anode rval=0.0
26  3 dbase create name=dirichlet.cathode rval=0.0
27  4 dbase prefix=""
28   
29  5 system name=my_poisson
30    + sysvars=psi
31    + term0=box_div.lapflux(psi|psi)@{silicon}
32    + term1=-1.6e-19*nodal.copy(netdope|psi)@{silicon}
33    + term2=dirichlet.default_dirichlet(0|psi)@{silicon/anode,silicon/cathode}
34   
35  6 grid xloc=0.000,2.000
36    +    xdel=0.0625
37    +    yloc=0.000,2.000
38    +    ydel=0.0625
39    +    dim=2
40   
41  7 boundary xmin=0 xmax=0 ymin=0 ymax=0.5 name=cathode
42  8 boundary xmin=0 xmax=0 ymin=1.5 ymax=2 name=anode
43   
44  9 field set=psubstrate val=-1e15
45 10 field set=ndiff val="6e15*gbox(X,0,1,0.0001)*gbox(Y,0,1,0.0001)"
46 11 field set=netdope val=psubstrate+ndiff
47   
48 12 field set=psi val=0
49   
50 13 solve system=my_poisson
51   
52 14 dbase prefix=library/physics/silicon/psi
53 15 dbase create name=scale rval=1.0
54 16 dbase create name=Dix rval=1.0448e-4
55 17 dbase create name=dirichlet.cathode rval=-1.0
56 18 dbase create name=dirichlet.anode rval=1.0
57 19 dbase prefix=""
58   
59 20 solve system=my_poisson
60   
61    # modified automatically for nanoHUB:
62    # graph quantity=psi contour color
63 21 dump solution outfile=dump13801-1.dmp
64   
65========================================================================
66Pass 2 begins, Elapsed cpu time:             0.06 sec
67========================================================================
68  1  dbase       cpu:      0.06 sec  0r  0i       0n       0e  [1848k]
69-----------------------------------------------------------------------
70  2  dbase       cpu:      0.06 sec  0r  0i       0n       0e  [1848k]
71-----------------------------------------------------------------------
72  3  dbase       cpu:      0.06 sec  0r  0i       0n       0e  [1848k]
73-----------------------------------------------------------------------
74  4  dbase       cpu:      0.06 sec  0r  0i       0n       0e  [1848k]
75-----------------------------------------------------------------------
76  5  system      cpu:      0.06 sec  0r  0i       0n       0e  [1848k]
77-----------------------------------------------------------------------
78Tensor_mesh: dim = 2
79Creating tensor mesh: 33 x 33  = 1089 nodes
80  6  grid        cpu:      0.09 sec  1r  3i    1089n    1024e  [2120k]
81-----------------------------------------------------------------------
82cathode: 8 elements matched by boundary specification
83  7  boundary    cpu:      0.10 sec  1r  4i    1089n    1024e  [2120k]
84-----------------------------------------------------------------------
85anode: 8 elements matched by boundary specification
86  8  boundary    cpu:      0.10 sec  1r  5i    1089n    1024e  [2120k]
87-----------------------------------------------------------------------
88  9  field       cpu:      0.11 sec  1r  5i    1089n    1024e  [2228k]
89-----------------------------------------------------------------------
90 10  field       cpu:      0.11 sec  1r  5i    1089n    1024e  [2228k]
91-----------------------------------------------------------------------
92 11  field       cpu:      0.11 sec  1r  5i    1089n    1024e  [2228k]
93-----------------------------------------------------------------------
94 12  field       cpu:      0.11 sec  1r  5i    1089n    1024e  [2228k]
95-----------------------------------------------------------------------
96Starting Newton iterations:
97  solving for: psi
98  (linear eq. solver: direct, package: petsc)
99  Newton iter 0                    174u     13.3n    0.133lg    0.133lr
100  Newton iter 1               8.57e-14u 2.67e-13n 2.67e-15lg 2.67e-15lr
101  Newton converged:     residual norm = 1.21e-13n, reduction = 9.07e-15
102                        cpu = 0.03 sec
103 13  solve       cpu:      0.18 sec  1r  5i    1089n    1024e  [2472k]
104-----------------------------------------------------------------------
105 14  dbase       cpu:      0.18 sec  1r  5i    1089n    1024e  [2472k]
106-----------------------------------------------------------------------
107 15  dbase       cpu:      0.18 sec  1r  5i    1089n    1024e  [2472k]
108-----------------------------------------------------------------------
109 16  dbase       cpu:      0.19 sec  1r  5i    1089n    1024e  [2472k]
110-----------------------------------------------------------------------
111 17  dbase       cpu:      0.19 sec  1r  5i    1089n    1024e  [2472k]
112-----------------------------------------------------------------------
113 18  dbase       cpu:      0.19 sec  1r  5i    1089n    1024e  [2472k]
114-----------------------------------------------------------------------
115 19  dbase       cpu:      0.19 sec  1r  5i    1089n    1024e  [2472k]
116-----------------------------------------------------------------------
117Starting Newton iterations:
118  solving for: psi
119  (linear eq. solver: direct, package: petsc)
120  Newton iter 0                  0.911u    0.955n  0.00955lg  0.00955lr
121  Newton iter 1               7.81e-16u 1.03e-15n 1.03e-17lg 1.03e-17lr
122  Newton converged:     residual norm = 6.31e-16n, reduction = 6.61e-16
123                        cpu = 0.02 sec
124 20  solve       cpu:      0.23 sec  1r  5i    1089n    1024e  [2472k]
125-----------------------------------------------------------------------
126 21  dump        cpu:      0.27 sec  1r  5i    1089n    1024e  [2472k]
127-----------------------------------------------------------------------</log>
128        <status>ok</status>
129        <mesh id="m0">
130            <about>
131                <label>Cloud Mesh</label>
132            </about>
133            <dim>3</dim>
134            <units>um</units>
135            <hide>yes</hide>
136            <unstructured>
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2325            </component>
2326        </field>
2327    </output>
2328</run>
2329
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