[Illinois] Plasmonics and Its Applications Workshop 2016
25 Apr 2016 | Workshops | Contributor(s): George C. Schatz, Bjorn Reinhard, Jennifer Hollingsworth, Kathy Willets, Jeremy Smith, AbderRahman N Sobh, Jao van de Lagemaat, Amanda Haes, Maiken Mikkelsen, Prashant Nagpal, sayantani ghosh, Emad Tajkhorshid, Nicholas Kotov, Anatoily Pinchuk
The study of plasmonics has been around for several decades now. The study of the interaction between the electromagnetic field and the free electrons in metal have been found as advantageous for applications in devices and more recently, in biological systems. The focus of this workshop...
LegoGen
05 Feb 2016 | Tools | Contributor(s): Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev
Tool workflow for building DNA Brick structures automatically.
nanoDDSCAT+
13 Aug 2014 | Tools | Contributor(s): AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain
Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.
Traction Force Microscopy
17 Apr 2014 | Tools | Contributor(s): Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi
This is a tool for particle motion tracking with respect to physical forces.
cadnano to PDB File Converter
13 Nov 2013 | Tools | Contributor(s): Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev
Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.
Nanoindentation
28 Oct 2013 | Tools | Contributor(s): Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk
Nanoindentation for Mechanical Characterization of Soft Materials
Functionalization Workbench
30 Aug 2013 | Tools | Contributor(s): AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev
Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.
DDSCAT Convert: A Target Generation Tool
17 Jul 2013 | Tools | Contributor(s): John Feser, AbderRahman N Sobh
Convert .obj files to DDSCAT shape files
[Illinois]: AsynchUp
16 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, NanoBio Node, Jessica S Johnson
This tool computes asynchronous updates of autoassociative networks.
[Illiniois]: SynchUp
16 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool computes synchronous updates of autoassociative networks.
[Illinois]: Predict Correct Set Up
15 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool sets up a predictor-corrector model of target tracking
[Illinois]: Direction Selectivity
13 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool implements a simple direction selective network.
[Illinois]: Temporal Difference, Iterative Dynamic Programming, and Least Mean Squares
11 Jul 2013 | Tools | Contributor(s): Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson
This tool updates state values using the Temporal Difference Algorithm.
[Illinois]: Perturbative Reinforcement Learning to Develop Distributed Representations
10 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool trains three-layered networks of sigmoidal units to associate patterns.
[Illinois]: Perturbative Reinforcement Learning Using Directed Drift
This tool trains two-layered networks of sigmoidal units to associate patterns using a real-valued adaptation of the directed drift algorithm.
[Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights
07 Jul 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.
[Illinois]: Error Gradient Estimations Due to Perturbation of One Weight at a Time
29 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, Jessica S Johnson, NanoBio Node
This tool trains two-layered networks of sigmoidal units to associate patterns using perturbation of one weight at a time.
[Illinois]: Avoidance Learn Simulation with 'Call' Neuron
25 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson
This script simulates avoidance learning as a reinforcement learning with two upper motoneurons (sumo and fumo) and one "call" neuron.
[Illinois]: Avoidance Learn Simulation
20 Jun 2013 | Tools | Contributor(s): AbderRahman N Sobh, NanoBio Node, Jessica S Johnson
This script simulates avoidance conditioning as reinforcement learning with two upper motoneurons (SUMO and FUMO).
nanoDDSCAT
23 Apr 2013 | Tools | Contributor(s): Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser
Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.