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Atomic Picture of Plastic Deformation in Metals via Online Molecular Dynamics Simulations
Courses | 01 Jun 2011 | Contributor(s):: Alejandro Strachan
The main goal of this learning module is to introduce students to the atomic-level processes responsible for plastic deformation in crystalline metals and help them develop a more intuitive understanding of how materials work at molecular scales. The module consists of: i) Two introductory...
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Additional Tutorials on Selected Topics in Nanotechnology
Workshops | 29 Mar 2011 | Contributor(s):: Gerhard Klimeck, Umesh V. Waghmare, Timothy S Fisher, N. S. Vidhyadhiraja
Select tutorials in nanotechnology, a part of the 2010 NCN@Purdue Summer School: Electronics from the Bottom Up.
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Stretching simulation of an alpha-helical protein domain
Tools | 10 Jan 2011 | Contributor(s):: Markus Buehler, Justin Riley, Joo-Hyoung Lee, Jeffrey C Grossman
Uses steered molecular dynamics (SMD) to apply a tensile load to the ends of a molecule (such as an alpha-helical protein domain)
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OPV: Time Domain Ab Initio Studies of Organic-Inorganic Composites for Solar Cells
Online Presentations | 21 Jan 2011 | Contributor(s):: Oleg Prezhdo
This presentation was part of the "Organic Photovoltaics: Experiment and Theory" workshop at the 2010 Users' Meeting of the Molecular Foundry and the National Center for Electron Microscopy, both DOE-funded Research Centers at Lawrence Berkeley National Laboratory.
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ME 597A Lecture 13: Uncertainty Quantification of Molecular Dynamics Simulations
Online Presentations | 31 Jan 2011 | Contributor(s):: Alejandro Strachan
Guest lecturer: Alejandro Strachan.
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2010 NCN@Purdue Summer School: Electronics from the Bottom Up
Workshops | 20 Apr 2010
Electronics from the Bottom Up seeks to bring a new perspective to electronic devices – one that is designed to help realize the opportunities that nanotechnology presents.
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MOLpull: A tool for molecular free energy reconstruction along a pulling coordinate
Tools | 24 Aug 2010 | Contributor(s):: Lisa Felberg, Ignacio Franco, Martin McCullagh, Mark Ratner, George C. Schatz, Marcelo Carignano
Estimates the force required for stretching a molecule and determines the potential of mean force along the extension coordinate.
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Addressing Molecular Dynamics Time-scale Issues to Study Atomic-scale Friction
Online Presentations | 12 Oct 2010 | Contributor(s):: Ashlie Martini
This presentation will include an introduction to several accelerated molecular dynamics methods. However, particular focus will be given to parallel replica (ParRep) dynamics in which atomistic simulations are run parallel in time to extend their total duration. The ParRep method is based on the...
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Tutorial 3: Materials Simulation by First-Principles Density Functional Theory
Courses | 14 Sep 2010 | Contributor(s):: Umesh V. Waghmare
This two-part lecture will provide an introduction to first-principles density functional theory based methods for simulation of materials, with a focus on determination of interatomic force constants and vibrational spectra of nano- structures and extended periodic materials.
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Tutorial 3b: Materials Simulation by First-Principles Density Functional Theory II
Online Presentations | 09 Sep 2010 | Contributor(s):: Umesh V. Waghmare
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Polymer Modeler
Tools | 28 Jun 2010 | Contributor(s):: Benjamin P Haley, Nate Wilson, Chunyu Li, Andrea Arguelles, Eugenio Jaramillo, Alejandro Strachan
Build thermoplastic polymer chains and run LAMMPS to relax the chains and study mechanical properties
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Ripples and Warping of Graphene: A Theoretical Study
Online Presentations | 19 May 2010 | Contributor(s):: Umesh V. Waghmare
We use first-principles density functional theory based analysis to understand formation of ripples in graphene and related 2-D materials. For an infinite graphene, we show that ripples are linked with a low energy branch of phonons that exhibits quadratic dispersion at long wave-lengths. Many...
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Atomic Stick-Slip
Tools | 09 Nov 2009 | Contributor(s):: Ashlie Martini, Jianguo Wu
Molecular dynamics simulation of atomic stick-slip friction
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Atomic Picture of Plastic Deformation in Metals: Overview Lecture
Online Presentations | 18 Dec 2009 | Contributor(s):: Alejandro Strachan
The lecture describes the objectives of the learning module and provides the necessary background for the activities. We briefly discuss the following topics:mechanical response of macroscopic polycrystalline metals during tensile testsmolecular dynamics simulations of materialsmechanical...
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Atomic Picture of Plastic Deformation in Metals: Prelab Lecture
Online Presentations | 18 Dec 2009 | Contributor(s):: Alejandro Strachan
This lecture provides a detailed description of the activities the students will perform in the lab. We present a tutorial with step by step instructions on how to run MD simulations using the nano-Materials Simulation Toolkit. This lecture is part of the learning module Atomic Picture of Plastic...
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Atomic Picture of Plastic Deformation in Metals: Lab Assignment Handout
Teaching Materials | 19 Jan 2010 | Contributor(s):: Alejandro Strachan
In this lab students will perform online molecular dynamics (MD) simulations of metallic nanowires deformed uniaxially and analyze the results...
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Lecture 10: Non Equilibrium MD
Presentation Materials | 05 Jan 2010 | Contributor(s):: Ashlie Martini
Topics:Calculating transport coefficientShear flowPerturbation methods
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Lecture 9: Dynamic Properties
Presentation Materials | 05 Jan 2010 | Contributor(s):: Ashlie Martini
Topics:Time correlation functionsEinstein relationsGreen-Kubo relations
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Lecture 8: Static Properties
Presentation Materials | 05 Jan 2010 | Contributor(s):: Ashlie Martini
Topics:Thermodynamic propertiesEntropic propertiesStatic structure
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Lecture 7: Initialization and Equilibrium
Presentation Materials | 05 Jan 2010 | Contributor(s):: Ashlie Martini
Topics:Initial positionsInitial velocitiesEvaluating equilibrium