Tools (1-15 of 15)

1. cadnano to PDB File Converter

   Tools | 13 Nov 2013 | Contributor(s):: Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

   Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

2. CD8 T-cell Simulation

   Tools | 21 Apr 2021 | Contributor(s):: Hanna, Tyler Scott, T.J. Sego

   Simulation of CD8 T-cell differentiation in the early immune response

3. CNDO/INDO

   Tools | 09 Oct 2007 | Contributor(s):: Baudilio Tejerina, Jeff Reimers

   Semi-empirical Molecular Orbital calculations.

4. Comb Drive Levitation

   Tools | 19 Jan 2010 | Contributor(s):: Fengyuan (Thomas) Li, jason clark

   Model comb drive levitation effect with Schwarz-Christoffel based algorithm

5. COVID 19 Virtual Tissue Model - Tissue Infection and Immune Response Dynamics

   Tools | 15 Apr 2020 | Contributor(s):: T.J. Sego, Josua Oscar Aponte-Serrano, Juliano Ferrari Gianlupi

   Simulates tissue and immune system interactions during a viral lung infection

6. COVID-19 R0 Estimator

   Tools | 17 Dec 2020 | Contributor(s):: Josua Oscar Aponte-Serrano, James A Glazier

   Simulate the COVID-19 pandemic using a SIR model and estimate parameters from reported cases data

7. Functionalization Workbench

   Tools | 30 Aug 2013 | Contributor(s):: AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev

   Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

8. Influenza In Host Kinetics Model

   Tools | 18 Dec 2020 | Contributor(s):: Hanna, Tyler Scott, James A Glazier, Josua Oscar Aponte-Serrano

   Module explaining the in-host viral kinetics of IAV under different conditions.

9. LegoGen

   Tools | 05 Feb 2016 | Contributor(s):: Scott Michael Louis Slone, Chris Maffeo, AbderRahman N Sobh, Aleksei Aksimentiev

   Tool workflow for building DNA Brick structures automatically.

10. Materials for Hydrogen-Based Energy Conversion

    Tools | 23 Feb 2021 | Contributor(s):: Nicole Shuman, Susan P Gentry

    Simulate the effects different materials have on hydrogen-based energy conversion.

11. Nano-Plasmonic Bowtie Antenna Simulator

    Tools | 18 Mar 2008 | Contributor(s):: Alexander S McLeod, Jeffrey B. Neaton, P. James Schuck, Eugene Song, Graham Chapman

    A tool for simulating the near-field enhancement effects of nano-scale bowtie antennae.

12. Quantum Dot Quantum Computation Simulator

    Tools | 04 Aug 2012 | Contributor(s):: Brian Sutton

    Performs simulations of quantum dot quantum computation using a model Hamiltonian with an on-site magnetic field and modulated inter-dot exchange interaction.

13. SPICE Subcircuit Generator for Ferromagnetic Nanomaterials

    Tools | 11 Jan 2018 | Contributor(s):: Onur Dincer, Azad Naeemi

    Generates SPICE subcircuit netlist for ferromagnetic nanometarials for spintronic devices

14. Thermoelectric Power Factor Calculator for Nanocrystalline Composites

    Tools | 18 Oct 2008 | Contributor(s):: Terence Musho, Greg Walker

    Quantum Simulation of the Seebeck Coefficient and Electrical Conductivity in a 2D Nanocrystalline Composite Structure using Non-Equilibrium Green's Functions

15. Tuberculosis Model Incorporating Treatment, Vaccination, and Antibiotic Resistance

    Tools | 18 Dec 2020 | Contributor(s):: Antonio Zdanis Neher

    Run though an interactive application to learn more about the consequences of antibiotic resistant pathogens through the lens of Tuberculosis.