CC3D Slime Mold Simulation
18 May 2022 | Contributor(s): Apanavicius, Joshua Alan, Juliano Ferrari Gianlupi
Simulate slime molds in various environments.
CompuCell3D - Avascular Tumor Growth and Mutation
25 May 2023 | Contributor(s): Juliano Ferrari Gianlupi
Avascular tumor, growing on nutrient, self-limited, mutates
Cancer Evolution in CompuCell3D
27 May 2021 | Contributor(s): Juliano Ferrari Gianlupi, James A Glazier
Demonstrates implemetation of cancer evolution in CompuCell3D
FocalPointPlasticity Plugin Demo
19 May 2021 | Contributor(s): Juliano Ferrari Gianlupi, T.J. Sego
This simple demo shows basic functionality of FocalPointPlasticity and how link rigidity affects cell behaviors.
CompuCell3D - Chemotactic Elongation Demo
Tools | 30 Mar 2021 | Contributor(s): Juliano Ferrari Gianlupi, T.J. Sego
Implementation of Developmental biology 289.1 (2006): 44-54. and PLoS Comput Biol 4.9 (2008): e1000163.
COVID-19 drug treatments explorer, CompuCell3D
Explores possible drug treatments for COVID-19; namelly viral entry inhibition and viral replication inhibition
Multiscale Multicellular Modeling of Tissue Function and Disease using CompuCell3D
Online Presentations | 03 Jun 2020 | Contributor(s): James A Glazier, Juliano Ferrari Gianlupi
Multiscale multicellular models combine representations of subcellular biological networks, cell behaviors, tissue level effects and whole body effects to describe tissue outcomes during development, homeostasis and disease. I will briefly introduce these simulation methodologies, the CompuCell3D...
CompuCell3D v4 - Bacterium Macrophage simulation
Tools | 04 Jun 2020 | Contributor(s): Juliano Ferrari Gianlupi, T.J. Sego
Macrophage hunts bacterium in a maze
CompuCell3D - Simulation of angiogenesis
CompuCell3D simulates angiogenesis using chemical signals
CompuCell3D - Delta-Notch signaling in a group of cells
CompuCell3D can solve individual cell's ODE and have the information of one cell affect another (implemented trough SBML)
CompuCell3D - Cells random walking at different speeds
Cells random walking at different speeds implemented through the motility plugin
CompuCell3d cell sorting in a hexagonal lattice
Showcases hexagonal lattice use in CompuCell3D by simulating cell sorting by difference in contact energies in a hexagonal lattice.
CompuCell3D v4 Main Tool
Tools | 08 Jun 2020 | Contributor(s): Juliano Ferrari Gianlupi, T.J. Sego
Base tool for CompuCell3D version 4 and greater. Allows running any of the demos included with CC3D (/CompuCell3D_Demos/Demos)
COVID 19 Virtual Tissue Model - Tissue Infection and Immune Response Dynamics
Tools | 26 May 2020 | Contributor(s): T.J. Sego, Josua Oscar Aponte-Serrano, Juliano Ferrari Gianlupi
Simulates tissue and immune system interactions during a viral lung infection
Wound Healing - Physicell
Tools | 22 Apr 2019 | Contributor(s): Juliano Ferrari Gianlupi, Vedang Narain
Wound healing simulation using physicell
CompuCell3D - Bacterium Macrophage
Tools | 17 Apr 2019 | Contributor(s): Juliano Ferrari Gianlupi, Somogyi, Andy T
Simulation of macrophage chasing bacterium
(CC3D v3 - old) CompuCell3D Vascular Tumor
Tools | 16 Apr 2019 | Contributor(s): Juliano Ferrari Gianlupi, Somogyi, Andy T
Simulate 3D vascular tumor with CompuCell3D
