cadnano to PDB File Converter

By Jejoong Yoo1, AbderRahman N Sobh1, Chen-Yu Li1, Aleksei Aksimentiev1

1. University of Illinois at Urbana-Champaign

Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

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Version 1.4c - published on 20 Jul 2016

doi:10.4231/D3SB3X05F cite this

Open source: license | download

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Usage

World usage

Location of all "cadnano to PDB File Converter" Users Since Its Posting

Cumulative Simulation Users

347

8 15 15 31 39 39 42 43 47 53 58 62 68 71 75 80 83 90 96 99 106 109 111 116 121 125 127 139 147 151 159 165 168 178 186 192 196 199 203 207 214 218 224 228 230 230 236 240 242 244 245 252 254 258 260 263 266 268 273 275 275 280 284 291 293 296 299 299 301 305 310 312 316 316 318 318 322 324 327 328 335 336 337 338 341 343 345 345 345 347

Users By Organization Type
Type Users
Unidentified 300 (86.46%)
Educational - University 42 (12.1%)
National Lab 3 (0.86%)
Government Agency 1 (0.29%)
Industry 1 (0.29%)
Users by Country of Residence
Country Users
us UNITED STATES 22 (59.46%)
in INDIA 5 (13.51%)
dz ALGERIA 3 (8.11%)
gr GREECE 1 (2.7%)
at AUSTRIA 1 (2.7%)
jp JAPAN 1 (2.7%)
br BRAZIL 1 (2.7%)
no NORWAY 1 (2.7%)
gb UNITED KINGDOM 1 (2.7%)
fr FRANCE 1 (2.7%)

Simulation Runs

4,112

28 86 99 160 205 209 230 248 263 329 385 437 490 552 575 613 637 684 723 784 916 1020 1066 1184 1296 1374 1459 1585 1668 1710 1757 1801 1846 1958 2064 2172 2264 2315 2354 2388 2450 2497 2548 2561 2594 2619 2662 2711 2764 2835 2897 2966 3031 3032 3044 3089 3131 3142 3202 3215 3220 3269 3298 3359 3408 3479 3504 3504 3535 3611 3641 3684 3727 3709 3714 3728 3773 3787 3793 3814 3886 3942 4018 4045 4069 4083 4099 4101 4103 4112
Overview
Average Total
Wall Clock Time 7.36 hours 892.96 days
CPU time 9.8 minutes 19.8 days
Interaction Time 1.42 hours 172.34 days